Cynoglossus semilaevis (tongue sole): 103377981
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Entry
103377981 CDS
T04866
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103377981 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csem03019
]
103377981 (ddx6)
03036 Chromosome and associated proteins [BR:
csem03036
]
103377981 (ddx6)
Enzymes [BR:
csem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103377981 (ddx6)
Messenger RNA biogenesis [BR:
csem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103377981 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
103377981 (ddx6)
Chromosome and associated proteins [BR:
csem03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103377981 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Motif
Other DBs
NCBI-GeneID:
103377981
NCBI-ProteinID:
XP_008307229
UniProt:
A0A3P8V5Q1
LinkDB
All DBs
Position
4:complement(9255375..9265190)
Genome browser
AA seq
482 aa
AA seq
DB search
MSTARTENPVILGLSNQNGQLRGSVKPAGAPGGGGGGPQQQQLNQIKGTINNGNPQQAPT
TNAVIKPGDDWKKSLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDCIQAVVIVPTRELALQVS
QICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVNQVQ
MFVLDEADKLLSQDFVVMMEELLGFLSKQRQILLYSATFPLSVQKFMNSHLQKPYEINLM
EELTLKGVTQYYAYVSERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEV
KP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggccaggacagagaacccagtgatcttggggttgtctaatcagaatggacag
ttgaggggctcggtgaagcctgctggagcaccaggtggaggtggaggaggcccccagcag
cagcagctcaaccaaataaaaggcacaatcaacaatggtaatccccagcaagccccaaca
actaatgctgttatcaagcctggagatgactggaagaaaagtctgaaattgcccccaaag
gacatgagaatgaaaacttcggacgtgactgcaacaaaaggcaatgagtttgaagattat
tgcctgaagagagagctgctcatgggaatctttgagatgggctgggaaaaaccatctcca
atccaggaggagagtattcctattgcactgtcaggaagggatattttggccagagcaaag
aatggcacagggaagagtggagcctacctcattcccttacttgaacgcattgatctaaag
agggattgcatacaagctgtggtcatagtacccaccagagaactggctctgcaagtcagc
caaatatgtatccaggttagcaaacacatgggtggagtgaaggtgatggctacaacaggt
ggaaccaacctacgtgatgatatcatgagactggatgaaacggtacatgtgatcattgcg
actccagggaggattttagacctcatcaagaaaggagtcgccaaagtcaatcaagtacag
atgtttgttcttgatgaagctgacaaactgctgtctcaggactttgttgtcatgatggaa
gagctgttgggtttcctgtccaaacagagacaaattctgctttattctgccaccttccct
ctcagtgtgcagaagtttatgaattcccacttgcagaaaccatatgaaatcaaccttatg
gaggaactcacactgaagggtgtgactcagtattacgcctatgtatctgaaaggcaaaaa
gtccattgcctcaacaccttattctccaggcttcaaatcaaccagtctataatcttctgc
aactcgtctcagagagtggagctccttgccaagaagatatcacagctgggatattcatgt
ttctacattcatgccaagatgagacaggagcatcgcaaccgtgtgttccacgacttcaga
aatggcctgtgtcggaaccttgtctgcactgatctattcacaagaggaattgacattcaa
gctgtcaatgttgtcatcaattttgattttcccaaacttggagagacataccttcatcgc
attggtagatcaggccgctttggacacttgggtcttgccatcaacctcatcacttacgat
gaccgcttcaatctgaaagggattgaggagcagcttggtacagagattaagcccattcct
gggatcatagacaaaagcttatatgtggcagagtaccacagtgaaagtggggaagaagtc
aaaccatga
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