Cynoglossus semilaevis (tongue sole): 103378069
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Entry
103378069 CDS
T04866
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103378069 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csem03041
]
103378069 (prpf8)
Spliceosome [BR:
csem03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
103378069 (prpf8)
Complex C
U5 SnRNP specific factors
103378069 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
103378069
NCBI-ProteinID:
XP_008307348
UniProt:
A0A3P8VD57
LinkDB
All DBs
Position
4:complement(11044494..11059319)
Genome browser
AA seq
2339 aa
AA seq
DB search
MAATFPYRGVPPAMPPGVPPPPAPIPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGFVDA
QKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDV
PVLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPL
DYADNILDVEPLEAIQMELDPEEDSSVAEWFYEHQPLKDSNKFVNGTTYRRWQFTLPMMS
TLYRLANQLLTDLVDGNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEF
NDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLI
NPISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSG
RTRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSF
KATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERK
KSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKY
KLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLL
ARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSES
WRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNL
GRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDT
KLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGI
EFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWC
QGINNLQDVWETTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVV
INYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQD
TTTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPR
DARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRI
LPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTF
TKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVF
YTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWE
SEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGW
RVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFP
TWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLD
LTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHP
RKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDI
ERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKA
NPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEG
NLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEE
QPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVL
FNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEW
IKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQ
SQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDD
IKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQT
VHLPNQLPSHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITC
SFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQ
VSWNYNFMGVRHDPNMKYDLQLANPYEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7020 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccttcccctacagaggggtccccccggcgatgcctccaggtgtacccccg
cctcctgcaccaattcctgactacatgactgaagaaaaactgcaagaaaaggcgagaaaa
tggcagcagttgcaggccaagcgttactcggaaaagaggaagtttggcttcgtggatgca
cagaaagaagatatgccacctgagcatgtgcgcaagatcatcagggaccacggtgacatg
accaacagaaagtttcgccatgataagagggtctacctcggtgccctcaagtacatgccc
catgcagtgctgaagctgctggagaacatgccaatgccttgggaacagatcagagatgtg
cctgttctctaccacattactggagccatttcctttgtgaatgaaattccctgggtcatt
gaaccagtttatattgcccagtggggtgcaatgtggatcatgatgcgtcgtgaaaagcgt
gatcgtcggcacttcaagcgaatgcgttttccaccatttgatgatgaggagccgccactg
gactatgctgacaacatcctcgatgtggaaccattagaagccatccagatggaactggac
cctgaggaggacagttcagttgcagagtggttctatgagcaccagcctctcaaagacagt
aacaagtttgtgaatggcaccacataccgacgctggcagtttacactgcccatgatgtct
acgctgtaccgtttggccaatcagcttctgacagacctggtagacggcaactacttttac
ttgtttgacctcaaggccttcttcacctccaaggccttgaatatggcaatccctggagga
ccaaagtttgagccattggtccgagacatcaacttgcaggatgaagactggaatgaattc
aacgacatcaacaaaatcatcattcgccagccaatcagaacagagtacaaaattgcattt
ccttacctgtacaacaacttgccacaccatgttcacctaacttggtatcatacaccaaat
gtagtgttcatcaaaactgaggatcccgatcttccagcgttctactttgatcctctaatc
aaccccatttcacacagacattcagtcaagagccaagagcctctgccagatgacgatgag
gagtttgaactccctgagtatgtcgagcctttcctcaaagagactccactctacacagac
aacacagccaatggcattgctcttctgtgggcaccaagacccttcaacctccgatctggt
cgcacaaggcgtgccattgatatccctctgatcaagaactggtaccgtgagcactgtcct
gcagggcagccagttaaagtgcgtgtatcgtaccaaaaactgctcaagtactacgtgctc
aatgccctgaaacacagaccacccaaggcccagaaaaagaggtatctgttccgctccttt
aaggccacaaagttctttcagtccaccaagttggactgggtggaggttggccttcaagtg
tgcagacagggttacaacatgctcaatcttctcatccaccgaaagaacctcaactacctg
catctggactacaacttcaacctgaagcctgttaagaccctgaccacaaaggagcgtaaa
aagtccagattcggaaacgcttttcacttgtgcagagaggtgctacgtctaagcaaactg
gtagtggacagtcacgtgcagtacagattgggaaatgttgacgctttccagttgtctgat
ggactgcagtacatctttgctcatgtcgggcagctgacgggcatgtaccgctacaagtac
aagctgatgcgacagatcagaatgtgcaaagacttgaagcatctcatctactacaggttc
aacactggtcctgtgggcaaaggtccaggttgtgggttctgggctcctggctggagagtg
tggctgttcttcatgagaggcatcacccctctgcttgagaggtggctgggtaacctgttg
gccaggcagtttgaaggacgtcactccaagggtgttgccaagacggtgaccaaacagcgt
gtggagtctcactttgaccttgagctgcgagctgcagtaatgcacgacatcttggacatg
atgcccgaaggtatcaaacagaacaaggccaggactatcctgcaacatctgagtgaatcc
tggaggtgctggaaggccaacatcccttggaaggtgccaggtctgcccactccaattgaa
aacatgatcctgcggtacgtgaaggccaaagccgattggtggaccaacaccgcccactac
aaccgtgagagaatccgtcgtggtgccactgtggacaagacagtgtgtaagaagaacttg
ggcagactgacacgtctctacctgaaagcagagcaggagcggcagcacaactacctgaag
gatggaccctacatcacagctgaagaagcagtggccatttacaccaccactgttcactgg
cttgagagtcgtcgcttctcccccatccctttccctcccctgtcctacaaacatgacacc
aagcttctcattctggccttggagaggctcaaagaagcctacagcgtaaagtctcgtctg
aaccagagtcagagagaagagctgggactgatagagcaggcgtacgacaatccccacgag
gccctgtccaggattaaacgtcatctgctcacacagagagcattcaaagaggtgggtatc
gagttcatggacttgtacagccacctggtgcccgtgtacgatgtggagccactggagaag
atcacagacgcttacctggatcagtacctgtggtacgaggcagacaaacggcgtctgttc
ccaccatggatcaaaccagcagacaccgaaccaccaccactgctcgtctacaagtggtgc
caaggcatcaacaacttgcaggatgtgtgggagacgacagaaggagagtgcaacgtaatg
ctggagtcacgctatgagaaaatgtatgagaagatcgatttgacgttactcaacaggctg
ctgcgtctcattgtggaccacaacattgctgactacatgacagcaaagaacaacgtggtc
atcaactacaaggacatgaaccacaccaactcctacggaatcatcagaggtctccagttt
gcctccttcattgtgcagtactatggccttgtgatggacctcctggtgctgggtttgcac
cgtgccagtgagatggctggtccaccacagatgcccaacgacttcctcagttttcaggac
acaaccacagaaagtgctcacccgatccgtctgtactgtcgctacattgaccggatccac
atcttcttcagattttctgctgatgaggccagggatctgattcagaggtacctgactgag
catcctgacccgaacaatgagaacattgtaggttacaacaacaagaagtgctggcccaga
gatgctcgcatgagactgatgaagcatgacgtcaaccttggtcgtgcagtgttctgggac
atcaaaaatcgtctgcccaggtctgtgaccacggtacagtgggagaacagctttgtatca
gtctacagcaaagacaatcccaacttgctcttcaacatgtgtggctttgagtgtcgcatc
ctccccaagtgccgcaccagctatgaggagttcactcacaaagatggtgtctggaacctg
cagaatgaagtaactaaagaaagaacagcgcagtgtttcctgcgtgtggatgacgaatca
atgcagcgcttccacaacagagttcgtcagatcctgatggcatctggatccaccacattc
acaaagattgtgaataaatggaacacagctcttattggtctgatgacgtacttccgtgaa
gcagttgtcaacacccaggagctcctggacctgctggtgaagtgcgaaaacaaaatccag
acacgtatcaagatcggtctgaactccaaaatgcccagtcgcttcccacctgtggtcttc
tacactcccaaagaactgggaggtctgggaatgttgtccatgggccatgtcctgattcca
cagtcagatctgcggtggtctaagcagacagatgtgggcatcacccacttcaggtctgga
atgagtcacgaagaagatcagctgattccaaacttgtatcgttacattcagccatgggaa
agcgagttcattgactctcagagagtgtgggctgagtacgcactgaagaggcaggaggcc
attgctcagaacagacgtctaaccctggaggacttggaggactcatgggacagaggaatt
cctcgcatcaacacgcttttccagaaggacagacatacactggcctatgacaaaggctgg
agagtcaggacagatttcaagcagtaccaggtgctgaagcaaaatcccttctggtggact
caccagaggcacgacggcaaactgtggaacctgaacaactaccgcacagacatgatccag
gctctgggtggtgtggagggaatcctggagcacacgctcttcaaaggcacatactttccc
acctgggagggtctgttttgggagaaggccagtggttttgaggaatccatgaaatggaaa
aaactgaccaatgcccagaggtctggtctcaatcagattcccaaccgtcgcttcacactt
tggtggtcaccaaccatcaacagagccaacgtgtacgttggtttccaggtgcagcttgat
ttgacaggaatcttcatgcacggcaagatccctacactgaagatctccctcattcagatc
ttcagagctcacttgtggcagaagattcacgagagcatcgtcatggatctttgtcaggtg
tttgaccaggagttggacgctctggagattgaaactgtacagaaagagaccattcacccc
aggaagtcgtacaagatgaactcgtcctgtgccgacattcttctctttgcgtcatacaaa
tggaatgtctctcgtccgtcgctgcttgccgactcaaaagacgtgatggacagcaccacc
acgcagaagtactggatcgatatccagctcagatggggtgactatgactctcatgacatt
gagcgatacgccagggccaagttcctggactacactaccgacaacatgagtatctacccc
tcccccaccggtgtgctcattgctattgacctggcttacaatctgcacagtgcctacggt
aactggttccctggaagcaaacctctgatccaacaggccatggcgaagatcatgaaggcc
aaccctgccctctatgtgctgagggagcgcatccgcaaaggtctgcagttgtactcctca
gaacccactgagccgtacctgtcctcacagaactacggtgaactcttctccaaccagatc
atctggtttgtggacgacactaacgtctacagagtcaccatccacaagacctttgagggt
aacttgaccacaaaaccgatcaatggagccattttcatcttcaaccccaggactggtcag
ctgttcctcaagatcattcacacatctgtgtgggctggtcagaaacgtctcggacagttg
gcaaaatggaaaactgctgaagaagtggctgctctgattcgctcccttcctgtggaggaa
cagcccaaacagatcatcgttaccagaaaaggcatgctggaccctctggaggttcacttg
cttgacttccccaacattgtgatcaaaggctctgagttgcagctgcctttccaggcctgt
ctgaaggtggagaagttcggagacctgatcctgaaggcgacagaacctcaaatggtgctg
ttcaacctttatgatgactggctgaagaccatttcctcctacacagctttctcccgactc
atcctgatcctcagagcgctccatgtcaacaacgaccgtgccaaggtgatcctcaagcca
gacaaaacaaccatcactgagccacatcacatttggcccacactcactgacgaggagtgg
atcaaggtggaggtgcaactcaaggatctaattctggctgattacggcaaaaagaacaat
gtgaacgtggcttctctaacccagtctgagattcgtgacatcatcctgggcatggagatt
tccgctccgtcacagcagcgccaacaaatcgctgagatcgagaaacagaccaaagagcag
tcgcagctgacggccacgcagacacggactgtcaacaagcacggagacgaaatcatcacc
tccaccacctccaactacgagacccagaccttctcctccaagactgagtggcgagtgaga
gccatatctgctgctaacctccatcttcgaacaaaccacatctatgtgtcatctgacgac
atcaaggagacaggatacacctacatcctgcccaaaaatgtcctcaaaaagttcatctgc
atctcagatctgcgagcgcagattgcgggttacctttacggtaccagcccaccagacaac
ccccaggtgaaggagattcgatgtattgtgatggtaccacagtggggcacacatcagacc
gtccacctgcccaaccagctgcccagtcacgagtatctgaaggaaatggagcctctcggt
tggatccacacacagcctaacgagtcacctcagctgtccccacaggacgtcaccactcat
gcaaaggtcatggctgacaacccgtcctgggatggagaaaagaccatcatcatcacctgc
agcttcacccccggctcatgcacgctcacagcctacaagctgacgccaagtggctacgag
tggggtcgacagaacacagacaagggcaacaatccgaaaggttatctgccgtcccactat
gagagagtgcagatgctgctctctgatcgtttcctcggattcttcatggttcctggtcag
gtctcctggaactacaactttatgggtgtgcgccatgaccccaacatgaagtacgacctt
cagctggccaacccatacgagttctaccacgaagtccatcgaccatcgcacttcctcaac
ttcgcctccctgcaggagggagagatctacaacgctgaccgcgaggacatgtacgcctga
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integrated database retrieval system
