Cynoglossus semilaevis (tongue sole): 103378116
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Entry
103378116 CDS
T04866
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04136
Autophagy - other
csem04140
Autophagy - animal
csem04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
103378116 (atg16l1)
04136 Autophagy - other
103378116 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
103378116 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csem04131
]
103378116 (atg16l1)
03029 Mitochondrial biogenesis [BR:
csem03029
]
103378116 (atg16l1)
Membrane trafficking [BR:
csem04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
103378116 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
103378116 (atg16l1)
Mitochondrial biogenesis [BR:
csem03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
103378116 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_EIPR1
eIF2A
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_SPT8
Crescentin
EXOC6_Sec15_N
Beta-prop_Vps41
AP5B1_middle
DUF7310
PUMA_CC
DUF1664
V_ATPase_I
NET2A
Lectin_N
Motif
Other DBs
NCBI-GeneID:
103378116
NCBI-ProteinID:
XP_008307424
LinkDB
All DBs
Position
4:11953888..11962365
Genome browser
AA seq
603 aa
AA seq
DB search
MAERRGECAWKRHVIEQLKLRDRVQRHAFEEIIHQYHRLLEKSDLQAVLTERYQGDKYDV
QRGHDTSVAGDLNRNDALQHEMAQMRIKHQEELTELHKKRGELAQSVIELNNQIQQKDKE
IQSNEAKLLEYQQQINDLEGDCRELRSYLQDLERANQTLKDEYDALQITFAALEAKLRKT
TEDNQELVSRWMAEKAQEANRLNAENEKEGRRRQAKLQKELADAAKEPLPIEPDDDIEVL
DPGKGGETSPNRPNSRTPSKKISQPPPGGLLDSISNIFGRRRSTNSFSTSPENTETSSGV
CAEVRVPSTALHVFEAHEGEVNAVRFSPGSRLLATGGMDRRVKLWEVVSGRCECKGALTG
SNAGITSIEFDSSGSYLLAASNDFASRIWTVEDYRLRHTLTGHSGKVLSARFLLDNARIV
SGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHFDKKVRFWDIRAESIVQD
LELQGRVTCLDLNHDRTELLTCSRDDVIKIIDLRTNAVKQTLGAQGFKCGADWTRISFSP
DGSYVAGGSADGALYVWNVLTGNVDRILDRNHNSAINAVSWSPSGTYVASVEKGSRAILW
SDM
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcagagcggcgtggcgagtgtgcgtggaagagacatgtgatagagcagctgaagctc
agagaccgtgtacagagacatgcttttgaggaaatcatccaccagtatcacagattactg
gaaaagtcggaccttcaggctgtcctgactgagcgataccagggtgacaaatatgatgtc
cagagaggacatgataccagcgtggcgggggacttgaatcgcaatgatgctctacagcat
gaaatggctcagatgagaatcaaacatcaggaggagttgacagagctgcataaaaaacga
ggagagcttgctcaaagtgtcatcgaattgaacaatcagatacaacagaaggacaaagaa
atccagagcaacgaggccaagttactggagtaccagcagcaaatcaacgacctagaggga
gactgtcgggagctcaggagctacctccaggatctagaacgagccaatcagacgctgaag
gatgaatacgatgccctgcagatcacctttgctgcccttgaggcaaaactgaggaagaca
acggaggacaaccaagagttagtgtcacgctggatggctgagaaagcccaggaggccaac
cgactgaacgctgagaatgagaaggaagggagacgcagacaggccaaactacagaaggag
ctggcagatgctgccaaggagccgctgccaattgaacctgatgacgacatcgaggtcctt
gacccagggaaaggtggagagacatcaccaaacagacctaacagcaggacaccgagtaag
aaaatatctcagccgccccctggtggtcttcttgactccatctccaacatatttggcaga
cgtcgatcaaccaattcttttagcacctcaccagaaaatacggagacatcgtcaggggtc
tgtgctgaagtgcgagtcccatccactgctctgcacgtctttgaagcacatgaaggtgag
gtgaatgccgtcaggttcagccccggctcccgcctcctggctactggtggaatggaccgc
agggtgaagctgtgggaggttgtttcaggtcgctgtgagtgtaaaggagctctcactggc
agcaacgcaggaatcaccagcatcgagtttgacagctctggttcttatcttctcgctgca
tccaatgattttgccagtcgcatctggacagtggaagactacagactgaggcacacactg
acaggtcacagtggaaaagtcctctcagctcgcttcctcttggacaacgctcgtatcgtc
tccggaagttacgaccgaacccttaaactgtgggaccttcgcagcaaagtctgcatgaag
acagtgtttgctggctccagctgtaatgacattgtttgtactgagcagtgtgtgatgagt
ggacactttgacaagaaggttcgattctgggacattagagcagagagcatcgtccaagac
ctggagctccagggcagagtcacatgtctggatctgaaccacgacagaactgagctgctc
acctgctccagggatgatgtcatcaaaatcattgacctgcgcacaaatgctgttaaacaa
actcttggagcccagggtttcaaatgtggagcagattggaccaggatctctttcagtcca
gacggcagctatgtggcaggaggctcggctgatggagcgctgtatgtgtggaatgtttta
acaggaaatgtggacagaattctggatcggaaccacaactctgccatcaatgctgtgtca
tggtccccatcaggaacgtatgtggcgagtgtggagaaaggaagcagggccatcctgtgg
tcagacatgtga
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