Cynoglossus semilaevis (tongue sole): 103378334
Help
Entry
103378334 CDS
T04866
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04382
Cornified envelope formation
csem04510
Focal adhesion
csem04512
ECM-receptor interaction
csem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103378334
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103378334
09142 Cell motility
04820 Cytoskeleton in muscle cells
103378334
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103378334
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csem04147
]
103378334
00536 Glycosaminoglycan binding proteins [BR:
csem00536
]
103378334
Exosome [BR:
csem04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103378334
Glycosaminoglycan binding proteins [BR:
csem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103378334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103378334
NCBI-ProteinID:
XP_016887738
UniProt:
A0A3P8W998
LinkDB
All DBs
Position
4:complement(15146633..15163951)
Genome browser
AA seq
1667 aa
AA seq
DB search
METTREQRRFETLLLLLVVLWCIGAPGYGERVCYCSGKSLCHCDGVKGQKGEPGLPGERG
LPGMIGYPGNEGPSGFPGQKGDQGAVGYPGLKGSRGLPGNPGFPGPPGLPGLPGHEGHIG
LPGLPGCNGTKGDAGCPGFPGPLGSAGFPGSPGLRGPKGDTHICVTALQTKGEHGKQGPQ
GQKGLSGDPGPPGLHGPHGPPGNSGIPGLMGLPGEKGLEGSRPITTGPPGQKGDRGPTGI
PGPKGIKLYAEGPKELKGEPGRVGEKGSPGPPGNPGRHGVKGVKGERGDPGPPGKGGKEG
VQGELGPQGESGDLGFFGPIGVDGTKGEKGDRGPPGLPGEIVWNHRFLKGFRGMPGIPGF
PGPPGEQGFIGFPGLQGETVPAPAGPQGLQGHPGPTGPKGDPGEPGPVVSGPIGNTGVPG
AAGGQGEQGEPGIPDFVPGDPSPTGLKGQIGFTGFPGSRGEEGEAGEKGETCFTCLRSDT
PGSPGKPGEPGEPGPTGSDGLPGSVGDKGIKGHRGSTGPQGTYGFPGVPGPPGLTGEPGT
MSRVGEKGEEGPPGKPGLLGVKGKDGSTGVIGLKGVQGQKGNPGPPGQKGDRGPLGESGP
VGLIGQRGPPGPPGIGVPGPPGPKGNVGNVGQLGIPGSTGEKGALGELRTVPGDLGQKGE
KGLSGIQGPEGMTGPPGNPGHIGLKGEKGDKGHSVQGYPGFPGIKGAKGFPGTPGGSSFG
IKGREGPSGPPGIPGPKGEQGIGYMGQGGQQGPEGEEGSLGPQGDPGPQGPSGVPGLQGQ
DGPPGPNGYNGLDGVHGPMGSTGLCLEGDPGPKGERGQIGPIGFPGVCGPKGVQGDPGLS
GVGAQGPPGLPGTPGYDGAPGPAGRIGLKGQRGTNGGAGSPGITGDVGPPGLLGQPGDSG
KPGIIGQVGPRGETGTDGIGGSQGPPGPQGTQGATGLQGPQTSVESNGDPGDDGEPGVHG
VTGVKGDSGIHGPPGPDGLHGLPGDVGPQGPTGEPGQNGGNGSLGPNGAAGYPGMMGQPG
FKGEKGSIGPPGKPGRDGIVGLVGPKGAKGESSPPGPGYKGSAGEKGDLGCSGSQGAEGN
VGAPGNFGPVGGNGPCGPTGDPGPQGCSGPPGPLGEKGSDGSPGAIGSPGLTGLRGNSGP
GGDPGPVGPRGSQGQDGIPGPPGEKGCIGAPGVGPRGPEGIKGQPGPAGEQGSAGPLGPP
GPSGPVGDAGCPGFPGHPGLPGAPGREGHCMEGEKGERGVSGSQGAKGPSGFQGPPGPPG
PGYKGEKGNTGPIGVPGPHGCLGDPGPQGQPGKDGCHGPPGQKGDMGVTGVSGPLGLKGD
NGPQGPPGSPGPPGPPGQSGLRGLSTNQTVQVIPGNEGPVGDQGPPGQTGPPGVQGRAGL
PGVKGAEGPLGVRGPGGRPGCKGDQGERGQSGQKGSLGPRGSLGVKGAMGRPGSDGNPPE
KDGFLFTRHSQNLYIPSCPAGSREVYSGYSLLFINGNNRAHGQDLGTLGSCLPRFTTMPF
LFCSTDDTCRYASRNDYSYWLSTNQTMPSSDTSITGDLLQSYISRCTVCEARANIIAVHS
QTTALPDCPSGWDRLWFGYSFVMETGVGAEGSGQPLVSPGSCLEHFRKIPFIECHGRGTC
NYYADSYSYWLSALDPSNMFSQPQPQTVEGDFPVSLISRCQVCMKRL
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaacgagggaacagaggcggtttgaaaccctgctgctgctcctggtggtgctg
tggtgcattggagctccgggatacggggagagagtgtgttactgtagtgggaagtcactt
tgtcactgtgatggggtcaaagggcaaaagggtgaacctggtttacctggagagcgtgga
cttccaggaatgattggttaccctggaaatgagggtccttcaggattccctggacaaaag
ggtgatcagggagctgtgggatatccaggactgaaaggctcacggggtcttccaggaaat
ccagggtttccaggccctccaggactcccgggacttccaggacatgaaggtcacatcggc
ctaccaggactcccaggatgcaatgggacaaagggtgacgctggatgtccggggttccct
ggacctcttggatctgctggttttccaggatcaccagggctcagaggacccaagggagac
acgcacatctgcgtgaccgctctgcaaactaaaggagaacacggaaaacaaggaccacaa
ggacagaagggtctgagcggtgatccaggtccacccggtcttcatggaccacatggacca
ccaggaaattctggtattccagggttgatgggtttaccaggagagaagggcctggaaggt
tctagacctatcaccacgggtccaccaggacagaagggtgatcgtggacctacagggatt
cctggtcccaaagggatcaaactgtacgctgaaggacccaaagagctaaagggagaacca
ggtagagttggagagaaaggcagtcctggacctcctggtaaccctgggagacacggggtg
aaaggggtcaaaggtgaacgaggtgatcctggtccaccgggcaaaggtggtaaagagggt
gtccagggagagctgggcccccagggagagtcaggagatcttgggttcttcggacctata
ggtgttgatggaaccaagggggagaaaggagacagaggtcctccaggtcttccaggagag
attgtttggaaccacagattcctgaaaggttttcgtggcatgcctggcatccctggattc
ccggggccaccaggagaacaggggtttattggttttcctggacttcagggtgaaacagtt
ccagctcctgcaggaccccagggcttacaggggcacccgggcccaacgggacccaaagga
gatccaggagaaccaggacctgttgtctcggggccaataggaaatacaggagtcccggga
gctgctggaggacagggagagcaaggagaaccaggaataccagatttcgttcctggagac
cccagccctacaggtctgaaagggcaaattggttttactggatttcctgggagcagaggg
gaggagggtgaggcgggtgagaagggagagacctgcttcacttgtcttcgctctgacacg
cctggatcccctggtaaacctggagaaccaggtgaacctggaccgacaggttcagatggt
ttaccaggaagtgttggggacaaagggatcaaaggtcaccgagggtcaaccggtccacag
ggaacctacggtttcccaggggtccctggtcccccaggacttactggagaaccagggacc
atgagcagggtgggagagaagggtgaggaaggcccaccgggaaaaccgggtctgctagga
gtcaaaggaaaggacgggtccacgggagtcattggactaaaaggagttcaaggacagaaa
ggaaacccagggcctccaggacaaaaaggtgacagaggaccacttggagagagtggtccc
gttggactgataggacaaagggggcctccaggacctcctggaattggtgttccaggaccc
ccaggaccaaaaggcaatgtgggaaatgtaggacagcttggaattcctggaagtacaggt
gagaaaggtgctctaggggaactcaggacagttcctggtgatctggggcagaaaggagag
aagggtctttctggaattcaaggacctgagggtatgactggacctccaggaaatcctgga
cacattggtctaaagggagaaaagggtgacaaaggtcattctgttcaaggctaccctggt
tttccagggattaagggagcaaagggttttccaggaactccaggtggatcaagttttggt
attaagggacgagaggggccttctggacctccaggaataccaggacctaagggagagcag
ggcattggctacatgggacaggggggtcaacagggtcctgagggagaagaaggctctctg
gggccccaaggggatcctggacctcagggaccatctggagtcccaggacttcaaggacaa
gacggaccaccgggccccaatggttataatggtctagatggtgttcatggtcccatgggt
tcaacgggactctgtttggaaggggatcctgggcctaaaggagagcgtggacagattggt
cccattggattcccaggggtttgtggcccaaaaggggtacaaggggaccctgggttgtca
ggtgtgggagcccaaggtcctccaggattacctggaactccaggatatgatggagctcct
ggcccagcaggaagaattggcctaaaggggcaaagagggaccaatgggggggcaggtagc
ccaggtataacaggtgatgtaggtccacctggacttctgggacaaccaggggacagtggg
aaaccaggaataattggacaagttggacctaggggtgagacaggcactgatggaatagga
gggtctcaggggcctccgggtcctcaggggactcagggtgcaacaggacttcagggaccc
caaacttctgttgaatcaaatggagatcctggagatgatggagagccaggtgtccacggt
gtcactggtgtgaaaggagacagtggaatccatggacctccaggtcctgatggccttcat
ggtttacctggagacgtgggaccacaaggacctactggtgagcccggccaaaatggaggt
aatggttctcttggtcccaacggtgctgctggttacccagggatgatgggccaaccaggt
tttaagggtgaaaaaggatccattggtccccctggtaaaccgggtcgagatggaatagta
ggattggtaggacctaagggtgctaagggagaatcaagtccacctggacctggatacaaa
ggaagtgcaggagagaagggtgatctaggatgttcaggatctcaaggtgcagagggaaat
gtaggagctcctgggaactttggtcctgtgggaggaaatggtccatgtggccctacagga
gaccctggtcctcaggggtgcagtggtcctccaggacctcttggtgaaaagggaagtgat
ggttctccaggagcgattggttctccaggactcacaggtctcagagggaacagtggacct
gggggagatcctggtccagttggtccaagaggaagccaaggacaagatgggatacctgga
cctcctggagagaaaggatgcattggtgctcctggagtaggaccccggggcccagagggg
attaaaggtcaacctggtcctgccggagagcaggggtctgctggaccactggggcctcct
ggtcccagtggtccagtgggagatgcaggttgccctggtttccctggacaccctggactt
ccaggtgctcctggacgtgaagggcattgtatggaaggtgaaaaaggtgaacgtggagtc
tctggttcacaaggggcaaaaggtccctcaggtttccagggccctccaggtcctccaggc
cctggttataaaggagaaaagggaaacacgggaccaataggtgtcccaggcccccacggt
tgccttggtgatcctggtcctcaaggtcaaccgggaaaggatggatgtcatggtccacct
ggtcaaaaaggagacatgggagttactggtgtatctggacctttgggtttgaagggagac
aatggaccacaaggaccaccaggctcaccaggaccaccaggaccacctggacagagcggt
ctaagaggtctgagtacaaatcagacagtccaagtgattccaggaaatgaaggtcctgtt
ggagatcagggaccaccaggacagacaggacccccgggcgttcaggggagagcaggatta
ccaggagtcaaaggtgctgagggtccactgggtgtcagaggaccaggggggcgacctggg
tgcaaaggggatcagggagagagaggacagtctggacagaaaggatctctgggtccacgc
ggttcacttggtgtgaagggtgccatgggtcgtccaggttcagatggaaacccaccagag
aaggacggcttccttttcaccagacacagtcagaatttgtacatcccatcatgccctgca
ggctccagagaagtgtacagtggatactctctgctgtttatcaatggaaacaaccgcgct
cacggacaggacctgggtacattgggaagctgtctacctcgcttcaccaccatgcccttc
ctgttctgcagcactgatgatacctgtcgatacgcctcgcgcaatgactactcctattgg
ctgtccaccaaccaaacaatgcccagcagcgacacctccatcactggagatttactgcag
agttacatcagcaggtgtactgtgtgtgaggccagagccaacatcatagcggtccacagt
cagaccactgctctccctgattgtccatcaggctgggatcgtctctggtttggatactcc
ttcgtaatggaaacaggagtgggggcggagggttcaggtcagcccctggtctcacctgga
tcctgtctggaacacttccggaagattcccttcatcgagtgtcacggccggggaacctgc
aactactacgctgactcgtacagctactggctctccgccctggaccctagcaacatgttc
agtcagccacagcctcagacagtggagggagactttcccgtgagtctgatcagccgctgt
caagtctgtatgaagaggctgtga
DBGET
integrated database retrieval system
