Cynoglossus semilaevis (tongue sole): 103378344
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Entry
103378344 CDS
T04866
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X2
KO
K15172
transcription elongation factor SPT5
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
103378344 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csem03021
]
103378344 (supt5h)
03019 Messenger RNA biogenesis [BR:
csem03019
]
103378344 (supt5h)
Transcription machinery [BR:
csem03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
103378344 (supt5h)
RNA polymerase I system
103378344 (supt5h)
Messenger RNA biogenesis [BR:
csem03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
103378344 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF150_C
DUF3912
Ribonuc_P_40
DUF6406
Motif
Other DBs
NCBI-GeneID:
103378344
NCBI-ProteinID:
XP_008307750
LinkDB
All DBs
Position
4:15353118..15365946
Genome browser
AA seq
1077 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSDGEAEEVEDNEEETASPVGSDKVAEEEGEDLDDDEYDEEEDE
DDDERPRKKPRHGGYILDEADVDDEYEDEEEHWEEGAEDILEKEEAEVSNIDHMVEDHSG
SRRLQNLWRDSREEALGEYYMRKYAKSSGGEHYSGGSEELSDDITQQQLLPGVKDPNLWT
VKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVESYKQTHVKAAIEG
MGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYRDDIAQVDYVELSQN
TISLKMIPRIDLDRIKAKMSLKDWFAKKKYKRPPQRLFDTEKIRSLGGEVSHDGDFMIFE
GNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKEREHNLQAG
DNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKVIAG
RYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELVQLD
PQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIVKVI
DGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFA
PMSPRISSPMHHGGGGAQQRGGQGGGMGRGRGRRDNELIGQTVRISQGPYKGYIGVVKDA
TESTARVELHSTCQTISVDRQRLTTMGAKRHSGMTSTHGRTPMYGSQTPMYGTGSRTPMY
GSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRNEEEYDFGYDDEPSPS
PQGYTGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQGSYQPSPS
PQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHT
PGSNIEQGSNDWVTTDILVRVKDSFMDLMGQMGVIRSVTGGMCSVFMQESEKVVSISSDH
LEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFLGRLEH
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagtgaagacagcgacttttccgacaaccaaagcgaacgcagtagcgatgga
gaggcagaggaggtggaagataatgaggaggagacagccagccctgtgggcagtgacaag
gtcgctgaagaggagggagaagacctggatgatgatgagtatgacgaggaggaggatgaa
gacgacgatgagcggccaaggaagaagccaagacatggaggatatatcttggatgaagct
gatgtggatgatgagtatgaggatgaggaagagcactgggaggaaggagccgaagacatt
ctggaaaaagaggaagctgaagtgtcaaacattgaccatatggtggaagatcattctgga
tcgaggaggctgcagaacctctggagagattccagagaagaagccctaggtgaatactac
atgaggaaatatgccaaatcatctggaggagagcattactctggaggatccgaagaactg
tctgatgacatcacccaacagcagttgctccctggagtcaaagatccaaacctgtggaca
gttaagtgtaagattggagaggagcgagcaacagccattgcattgatgagaaaattcatc
gcctaccaattcacagacacacccctgcagatcaaatcggttgtggccccagaccatgtg
aagggctatatctatgtagagtcctacaagcagacccatgttaaggcagccattgaggga
atgggcaacctgaggatgggcttctggaaccagcagatggttcctatcaaagagatgacg
gatgttctgaaggtggtcaaagaagtgaccaacttgaaacccaagtcctgggtgagactg
aagagaggcttgtacagggacgacatcgctcaggttgattatgtggagctgagtcaaaac
accatctctctgaagatgatccctcgaatagacctggatagaatcaaggccaaaatgagt
ctgaaagactggttcgctaagaagaagtacaagagacctccccagaggctctttgatacg
gagaagattagatccttgggcggggaggtgagccacgatggagatttcatgatctttgag
ggcaatcgttacagccgcaagggctttctcttcaagagctttgcaatgtctgcagtgatt
acagatggagtgaagcccactctgtctgagctggagaagtttgaagaccagcctgaagga
atcgacctagaggtggtgacagagtcaggcaaggagcgtgaacacaacctgcaagctggt
gacaatgtggaggtgtgtgagggagagttgatcaacctgcagggaaaaatccttagtgtg
gacggaaacaagatcaccattatgcccaaacatgaggatttaaaggatcctctagaattt
cctgctcatgagttgcgtaaatacttccgtatgggagaccacgtgaaggtgatcgctgga
agatacgagggagacactggtctgatcgtcagagtggaggagaactttgtcatcctcttt
tctgacctcacaatgcatgagctgaaggtgttaccaagagatttgcagctctgttcagag
acggcctctggagtggatgcaggtgggcagcatgagtggggtgagctggttcaacttgac
ccacagacggttggagtcatcgtccgactagagagagagaccttccaggttttgaacatg
catggcaaggtattgacagtgcgccaccaggcggtgaaccgcaggaaggacaaccgcttt
gctgtggcactggattcagaacagaacaacattcatgtcaaggacattgtgaaggtcatc
gatgggcctcactctggtcgtgaaggtgagattcggcacctgtttcgaggttttgccttc
cttcactgcaagaagctggtggaaaacggaggcatgtttgtctgcaagacccgacacctg
gtgttggccggaggatcaaagccaagggacgtgactaacttcaccgtgggaggatttgcc
ccaatgagtcctcgtatcagcagccccatgcaccacggtggaggaggtgctcaacaaaga
ggtggacaaggaggaggaatgggtcggggccgaggacgaagagacaatgagctgattggt
caaacagtccgtatctctcagggcccttataaaggatacattggggtagtgaaggatgca
acagagtctacggccagagtggagcttcactcgacctgtcagactatttctgtggacaga
cagcgcctcaccaccatgggagctaagagacacagtggaatgacgtccactcacggtcgt
actcccatgtacggctcccagactcctatgtacggaactggctccaggacacccatgtac
ggctctcagactccactgcatgatggaagtcgaacgccccattatggctctcagacacca
ctgcatgatgggagcaggactccaggtcagagtggagcctgggatccaaataaccctaac
acaccttccaggaatgaggaagagtacgactttggctacgatgatgagccatccccctcc
ccacaggggtacacgggaacacccaacccacagaccccaggatacccagaagtcccctct
cctcaggtcaaccctcagtacaatcctcagactcctggcacacctgctatgtacaacacc
gagcagtattctccttatgcagctccttctcctcagggctcgtatcagcccagtcccagt
cctcagagttaccaccaggtcgcaccctcacccgttggctaccagaatacacactcacca
gccagctaccaccccacgccctccccaatggcatatcaggccagtcccagccccagtcct
gttggttatagccccatgacaccaggagcgccctctcctggtggctataacccccacacc
ccaggctcaaacattgagcaaggcagtaacgactgggtgacgacagacatcctagtcaga
gtgaaggactccttcatggacctgatgggacagatgggggtcatcaggagtgtcacgggt
ggaatgtgttcagtgttcatgcaggagtcagagaaggtggtgagtatcagcagtgatcac
ctggaacccgtcacacccaccaagaacaacaaggtgaaagtcatcctgggagaagaccgc
gaggccacaggaatcctgctgagcatagatggtgacgacggcattgtgcgcatggagctg
gacgaccagctgaagattctcaacctgaggttcctgggtcgtttagagcactga
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