Cynoglossus semilaevis (tongue sole): 103378380
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Entry
103378380 CDS
T04866
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04382
Cornified envelope formation
csem04510
Focal adhesion
csem04512
ECM-receptor interaction
csem04518
Integrin signaling
csem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103378380
04518 Integrin signaling
103378380
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103378380
09142 Cell motility
04820 Cytoskeleton in muscle cells
103378380
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103378380
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csem04147
]
103378380
00536 Glycosaminoglycan binding proteins [BR:
csem00536
]
103378380
Exosome [BR:
csem04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103378380
Glycosaminoglycan binding proteins [BR:
csem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103378380
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103378380
NCBI-ProteinID:
XP_016887388
LinkDB
All DBs
Position
4:15165394..15183396
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AA seq
1652 aa
AA seq
DB search
MLQPPCCNRHSSTWLWCLLMILTTLPSVFGGYQTEPCGGRDCSTCQCFPAKGVRGAPGVL
GLQGQQGMLGFPGPQGPPGEKGHRGAEGWTGAHGPKGDVGYAGVVGFPGLEGVPGHPGPA
GGPGCPGLDGCNGTRGQKGESGLPGEQGLYGEPGLPGPKGFPGDRSDCCVPYPGLPGDVG
CVGPPGLQGKQGRPGLIGCVGPPGLDGVNGLPGLPGVRGPPGQSGRSVPGAKGEEGDLGF
QGPPGPFEIVDPPEDFYIKGEQGSPGLKGVEGAAGLPGQNSRPGIKGEKGILGFPGNRGL
FGYDGPPGEKGIKGFQGSPGLPGLIGQEGPKGIMGDLGPKGLPQDSDLTHTGVNGDLGPP
GLTGPPGERGTMGMHGPPGVPGRSIPGPPGFVGQSGGPGSKGEKGDPGLMYKYGPVLGEP
GKPGRPGPIGPKGEPGTPGHYCLPGANGEPGEPGHQGPPGALGFTGLKGARGDCSCGPTI
SIMGPPGLSGDPGLPGLPGVPGATGQNGEEGSPGDAGEHGEQGLGGFSGVKGFKGQKGGF
RVVSFTGEKGNRGKQGPPGNPGFSGRMGLPGLRGPPGDLGSRGDSFTSFPGDRGYPGFPG
SKGLPGAPGSPGADFIGAVGQRGPPGEPGPTGIPGFPGPKGVIGDTPASVPLLPGPTGKR
GDNGNTGYPGLPGPTGFRGITGRDGIKGEQGRPGLPGLPGRQGPPGLVGDTGEEGPEGFS
YDGDPGLPGTTGVPGLRGPAGDSDAGPVGPNGFPGPQGSPGPKGVPGAPGINGQQGVPGL
PGIPGPEGWRGTDGAPGVTGPPGPSPTYCDVGRPGARGDVGHQGTVGPQGYQGEKGEFGD
VGLPGFGLAGPAGKSGPPGLPGVLGLQGPAGPTGRVAGVLGPQGKYGGPGPPGQTGPPGH
PGTTGERGFNGRDGAPGCQGPKGVKGSRGCPGPPGETTYILIKGQEGKQGAVGVSGFPGA
RGNKGVQGPKGSLGYPGTCGPQGIIGNPGSPGHCGIPGPPGFPGCRGSPGLIGFPGETGD
PGDIGFPGKCGEPGRYGCTGQKGDKGDSVGCPGVPGDKGPAGDCGPTGPPGPCGNPGLPG
FIGAPGPKGSKGDQGHHGELGSPGVIGPAGPRGRSGCPGQPGNVGSDGPPGPQGCAGLQG
PPGPPGLHGLDGLKGVKGDVGTRGLAEPGPPGFRGLPGDKGPHGPPGYCGPNQPGEPGLR
GPPGPKGTPGISGPCGDNGPACQNPIPGPPGDCGVPGPDGDPGCPGIMGDPGPNRPLPGD
DGDNGNMGCQGPPGPKGLPGLNGLPGIPGYPGVKGEKGSHGMIGVPGPRGPKGCNGSPGP
SGPKGLSGEMGPKGERGGVHSCAPYLPPQRGPAGPPGSPGAPGEAGVRGEDGQKGLQGMR
GDPGSEGLRGFVGSQGSDGNPGVPGLQGMMGDIGPKGNPGPAGDPGPPGQSRQVNSGYLL
VRHSQSGQIPSCPLNMRVLWRGYSLLYLEGQEKAHTQDLGQAGSCIRVFSTMPFTSCNKR
ACSYASRNDKSYWLSTTAPRPNVPFAGPSIEEHISRCVVCEALSTPVALHSQTSEEPKCP
PKWTSLWTGYSFIMHTGSGDEGGGQSLTSSGSCLTDFRSHPFVECQGPRGTCHYFTNIYS
FWLTRVDTSTTMMTDEQQQIDNIGRCSVCIRA
NT seq
4959 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagcctccctgctgtaaccgtcacagctccacatggctctggtgtcttctaatg
atcctgacgactcttccctctgtattcgggggttaccaaacagaaccgtgtggtggacgg
gactgttccacctgccagtgtttccccgccaaaggagtgaggggggctccaggggttctg
ggattacaaggccaacaggggatgctgggcttccctggccctcaggggcctccaggggag
aagggccacaggggagctgagggatggactggagcacatggacccaaaggagatgtggga
tatgcaggggtcgttggttttccagggttagagggtgttccgggtcatccaggtccagct
ggaggtcctggttgtcctggtttggatggatgtaatggaacaagaggacagaaaggagag
tctggtcttcctggggaacaaggcctctatggagaaccgggtttaccaggaccaaagggt
tttccaggagatcgaagcgattgctgtgtaccttaccctggactacctggggacgtcggg
tgtgttggtccacctggactgcagggcaaacaaggacgtcccggcctcattggttgtgtg
ggtccaccaggattggacggggtcaatggtctccctggtctgcctggtgtcaggggtcca
cctggacaaagcggtcgatctgtgcctggagcaaaaggagaggagggggatcttggtttt
caggggccaccaggaccatttgagatagtggaccctcctgaagatttttacatcaaagga
gaacagggttctcctggtcttaaaggagtagagggagcagcaggactaccgggtcagaat
tcaagaccaggaatcaaaggagagaaaggaattctgggatttcctgggaacaggggattg
tttgggtatgatggtccacctggagagaagggaattaaagggttccaagggagtcctggt
ctgcctggactaattggccaagaaggtccaaagggaattatgggagatctgggtcctaaa
ggcctccctcaagattcagacctcacacacacaggtgtaaatggtgaccttgggccacct
ggactcactggacctccaggagaaaggggaacgatgggaatgcatggacctccaggggtc
cctggcagatctatacctggtccaccaggctttgtgggccagagtggaggtccaggatcc
aagggggaaaaaggagatccaggtctaatgtataaatacggacctgtgcttggagaacct
ggtaaacctggacgtcctggacccataggaccaaagggagaaccaggaacaccaggtcat
tactgtctccctggagccaatggagaacctggagaaccgggtcatcaaggacctcctggg
gctctgggcttcacaggattaaaaggtgctcgtggagattgttcttgtggccctactatt
tcaatcatgggcccccctggtctgtcaggagatccaggccttccagggttgcctggagtc
ccgggggcaactgggcaaaatggagaagaaggttcacctggtgatgctggagaacatgga
gagcagggcctgggagggttttcaggtgtgaaagggttcaaaggtcaaaagggaggcttc
agggtggtcagttttacaggtgagaagggaaacaggggcaaacaaggccctccgggtaat
ccagggttttctgggaggatgggacttcctgggctccgcggccctcctggagaccttggt
tcacgaggtgacagcttcactagttttcctggagacagaggttatcctggatttcctgga
tctaagggattaccaggagctccaggctcccctggagctgattttattggtgctgtggga
cagcgtgggccccctggtgagccgggacctacaggaatcccgggtttcccaggaccaaag
ggtgttattggtgacactcctgcaagtgttcccttactccccgggcccacaggaaagagg
ggggacaatggaaacacaggttatccaggacttccaggacctactggattccgtggcatc
acaggacgtgatggtattaagggagaacaggggcgacctggtcttcctggactgcctgga
cgacaaggacctcctggcctggttggagatactggagaagaaggacctgaaggcttcagt
tatgatggagatccagggttaccaggaaccactggtgttcctggacttaggggtccagca
ggagactctgatgctggtcccgtaggacccaatggttttccagggccacagggctctcca
ggacctaaaggggtccccggagcccctggtattaatggacaacaaggagttccaggtctg
cctgggatacctggaccagagggctggagaggaactgatggagcaccaggggtaactggt
cctccaggtccctcacctacatactgtgatgtaggaagaccaggagctagaggtgatgtt
ggtcatcaggggaccgttggacctcagggatatcagggagaaaagggtgagtttggagat
gtgggtcttccaggttttggacttgcaggtcctgcaggtaaatcaggtcctccaggtttg
ccaggggttctgggactccaaggccctgctggtcccactggaagggttgcgggtgtgttg
ggtccccaaggcaagtatggtgggccagggcctccaggtcagactggaccccctggacat
ccaggcacaacaggagaaagaggatttaatggacgagatggagctcctgggtgtcagggg
ccaaaaggagtgaaaggtagtcgaggttgtccagggcctccaggagagaccacgtacatc
cttatcaaaggacaggaaggaaaacaaggagccgttggtgttagcggcttccctggagca
cgaggaaacaaaggtgtgcaaggaccaaaaggtagcctaggttacccaggaacctgtggt
ccccaaggcatcatagggaacccaggatcaccaggacactgtggtataccaggaccacca
ggattccctggatgcagaggatctccaggactcatcggctttcctggggagacaggagat
ccgggtgacatcgggttcccaggaaaatgtggagaacctggtcgttatggatgtactggt
cagaaaggtgataaaggagactctgttggttgtcctggtgtacctggagacaagggacct
gctggagactgtggacccacagggcctcctggaccatgtggaaatcctggactacctggt
ttcattggagcgccaggaccaaaaggatctaaaggagaccagggtcaccacggagaactg
ggatctccaggtgttattggccctgctggtccaagaggtcggtcaggctgtcctggtcaa
cctggcaatgttggaagtgatggtcctccaggaccacagggctgtgcagggctccaaggt
cctccagggcctccaggacttcatggactggatggactgaaaggagtgaagggagacgtg
gggactagaggcctggctgaacccggccccccaggttttagaggtcttccaggagataaa
ggtcctcacggtcctccaggatattgtggtccaaatcagcctggagaaccaggactaaga
ggacccccaggacccaaaggaactccagggattagcggaccctgtggtgacaatggacca
gcatgtcaaaacccaattcctggccctcctggagactgtggtgttccaggtccagatgga
gatcctggatgtcctgggatcatgggagatcctggtccgaaccgtccactacctggggat
gatggagacaatggaaacatgggctgccaagggccaccagggcccaaaggactgccagga
ttgaatggtctgcctggaatccctggatatcctggagtcaaaggtgagaagggctcacat
ggaatgataggtgtgcctggtccacggggtccaaaaggttgtaatggttcacccgggcct
tcagggccaaaaggacttagtggagaaatgggtccaaagggagaacgtggaggagttcac
agctgtgccccttacctacccccacaacgagggcccgcaggtcctccaggctcccctggt
gcacccggagaggctggtgtccgtggagaagatggtcagaaaggacttcaaggtatgagg
ggagatcctggatctgaaggactgagaggatttgtgggatctcaaggttcagatggaaac
ccaggtgtgccagggttgcaggggatgatgggagatattggacccaaaggtaaccctggt
ccagctggagaccctggtcctcctggacagtctaggcaggtgaactcaggatacctgttg
gtgagacacagccagtcgggtcagattcccagctgtccgttgaacatgagggtcctgtgg
aggggctacagtctgctgtacctggaggggcaggagaaggcccacactcaggacctgggt
caggcaggctcgtgcattcgcgtcttctccaccatgcccttcacctcctgtaacaaacgc
gcttgctcttatgcgagtcgaaacgacaaatcttattggctgtcgacgacggcacctcgt
cccaacgtcccctttgctgggccttccattgaagagcacatcagccgctgtgtggtatgt
gaagccctgtccactcctgtcgctcttcacagccagacgtccgaagaaccaaagtgcccc
ccgaagtggaccagcctgtggacaggatactccttcatcatgcatacaggttcaggtgat
gagggcggcggccagtccctgacatcatcgggcagctgtctcacagacttcaggtctcac
ccgtttgtggagtgtcagggaccacggggaacctgccactactttactaacatctacagc
ttctggctgaccagagtggacacgagcaccaccatgatgactgacgagcaacagcagata
gacaacattgggaggtgcagcgtctgcataagagcttaa
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