Cynoglossus semilaevis (tongue sole): 103379358
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Entry
103379358 CDS
T04866
Symbol
amfr
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04137
Mitophagy - animal
csem04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103379358 (amfr)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
103379358 (amfr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csem04121
]
103379358 (amfr)
Enzymes [BR:
csem01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
103379358 (amfr)
Ubiquitin system [BR:
csem04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103379358 (amfr)
Multi subunit type E3
ERAD complex
103379358 (amfr)
LMBR1L-GP78-UBAC2 complex
103379358 (amfr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
G2BR
zf-RING_2
zf-C3HC4_2
CUE
zf-C3HC4
zf-C3HC4_3
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-ANAPC11
zf-RING_5
zf-RING_16
zf_RING_Vps8
Prok-RING_4
zf-C3HC4_4
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
103379358
NCBI-ProteinID:
XP_008309104
LinkDB
All DBs
Position
5:17907323..17915517
Genome browser
AA seq
617 aa
AA seq
DB search
MPLLFLERFPWPSLQTYTILSVVLLAGSIFSAYNIVTDPGFGPLEADETPSSPEVDLDHL
NNDISNSELATTVLWYLATDSLFVWVLVNTFCCSLMLIAKMIQYVVFGPLRVSEKQHLKD
KFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFSALVFLHLMVQLCKDRFEYLSFSPSTPM
SSHIRVLCLLVCLLLDCFGLHVVCVLLGSTYGMHTLSFMGAECLLVTVRSGHVILRYSIH
LWDLNHPGTWESKGTYVYYSDFIMELSMLFLDLMHHIHMLLFGNIWLSMASLVIFMQLRY
LFHEVQRRIRRHKNYLRVINNMEARFAIATAEELAANDDDCAICWDSMLSARKLPCGHLF
HNSCLRSWLEQDTSCPTCRTSLNINGNGTPAGGQQQGGAAGENVGPGGAAPDARAHINHF
FHFDGSRIASWLPSFSVEVMHTTNILGITQANNSQLMAMSHQIQEMFPQVPTYLVMQDLQ
LTRSVEVTTDNILEGRIQVPFPPQAIERAPIQINTSTDEQAGPSGAADQSDPDNMEVRGG
RFSKSAEERQKMLKQRKEELLQQARRRYLNKSPEDQNEDLPELEEDTVPELDFTLLRRTT
MAAAAERRLQNLQDASP
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgctgtttctggagaggtttccttggcccagcctgcagacctacaccatactg
agtgtggtgttgcttgctgggagcatcttcagtgcctacaacattgtgactgatccaggc
tttgggcccttggaagccgatgaaacaccatcgtcaccagaagtggatcttgatcatcta
aacaatgatataagcaacagtgaactagcaactactgtcctgtggtatctcgccacagac
agcctctttgtatgggtgttggtcaacacattttgctgctcgttgatgttaatagcaaaa
atgattcagtatgtggtgtttggtccacttagagtcagtgaaaagcagcacctaaaggac
aagttttggaatttcattttctacaagttcatcttcatctttggtgtattaaatgtgcag
actgtggaggaagtggtcatgtggtgcttgtggttctccgcccttgtttttctacatctt
atggtccaactctgtaaagacagatttgaatatctgtctttttcaccctccacccccatg
agtagccacatacgagtgctgtgtctgttggtctgccttctgttggactgctttggcctg
cacgtggtctgtgttctcctggggtccacctatggcatgcacacactttcctttatggga
gcagagtgtttgctggttactgtacgcagtggacatgtcatactgagatactccatccat
ctgtgggacctgaaccacccagggacctgggagagtaaggggacgtatgtctactactct
gacttcatcatggagctctctatgttgtttctggacctcatgcaccacatccatatgctt
ctctttggtaacatctggttgtccatggcgagcttggttatcttcatgcagctgcggtac
ctcttccacgaggtccagcgccgtattcggcgacataagaattacctccgcgtcatcaac
aatatggaggccaggtttgctattgctactgcagaagagctagcggctaacgatgatgat
tgtgccatttgttgggattccatgttgtcagcacgcaaacttccctgtggccatctcttt
cacaactcttgcctgcgctcgtggctggagcaggacacttcttgcccaacttgtcgaaca
tccctcaacattaacgggaatggaaccccagcaggtggccagcagcagggtggagcggcg
ggagaaaacgttggcccggggggagcagctcctgatgctcgagcacacatcaaccatttc
ttccactttgatggatctcgcattgccagttggctgcccagtttctccgtggaggtgatg
cacacgactaatatcttgggcattactcaggctaacaactcacagctaatggcaatgtcc
catcagatccaggagatgttccctcaggtacccacctatctggtaatgcaggacctgcag
ctgacccgctccgtagaggtcaccactgacaacatcctggaaggacgcatccaggtgcct
tttccaccacaggcaatagagcgcgctcctatacagattaatacatcaacggatgagcag
gcaggacccagtggggcagctgatcaaagtgacccagacaacatggaggtgagaggaggt
cgcttctcaaagtcagctgaggagaggcagaagatgctgaagcaaaggaaggaggagttg
ctacagcaagcacgcaggagatacctgaacaagagcccagaggaccagaatgaggatttg
ccagaactagaggaggacactgttccagaattggactttactttgctgagacgcacaacc
atggcagcagccgcagagagacgtttacaaaacctgcaggacgcctcaccttaa
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