Cynoglossus semilaevis (tongue sole): 103379646
Help
Entry
103379646 CDS
T04866
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103379646 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csem03019
]
103379646 (cnot1)
Messenger RNA biogenesis [BR:
csem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103379646 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103379646 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
103379646
NCBI-ProteinID:
XP_008309481
LinkDB
All DBs
Position
6:complement(3114394..3133221)
Genome browser
AA seq
2373 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASVDECRNIIIQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQIVVYGIQRGLGITSENAFFQLSFIQHSLMSPEVFCFADYPCHTVA
TDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHCPDMLVLALLQ
ISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSMAEWYMRGE
QYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGE
PFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLKSCAGNVSQELSETI
LTMVANCSNVMNKARQPPPGVMPKVRAPSTSSLDAISPVQMDPLSGMGSLSLGSTATSHT
QSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLSSQLPGMDSGPLGSGLGS
SLGMPTVSTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDEANSYFQRIYN
HPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLF
GGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDKFKNRLKDYPQYCQHLAS
IAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQVQSQAQPPIGLKAPQPGQ
PSTLVTTTTTTTTVAKTTTITRPTQSTFKKDVPPSINTTNIDTLLVATDQTERIVEPPEN
VQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLD
TLKNPEFVKMVLSETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILYTD
LEVKSLLLEAYVKGQQEMLYVVPFVAKVLESSLRSMVFRPQNPWTMAIMNVLAELHQEHD
LKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLKNLEDQLSAPKKEAKPPEELLPVST
TGDFVPFAAPPSTPAATTTTCTSTGPPTPQFSYHDINVYALAGLAPHININANIPLLQAH
PQLKQCVRQSIERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDSEESRMRVAAHHMMR
NLTAGMAMITCREPLLLSINTNLKNSFGTALRAPTPQQREMMEEASARIAQDNCELACCF
IQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDP
KQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYEKCMADLEQHLHA
ISPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAVEGLLDATSGADADLLLRYR
ECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLH
LAQSMENGLHYMAVAFAMQLVKLLLVDDRSVSHVTEADLFHTIETLMRTCAHSRANAPEG
LPQLMDVVRTNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHS
AAAGRDSTKAFSAFVAQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASA
AIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEF
QQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCCDNTVHMLRPSKAPGFVDAWLELIS
HRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVLL
HDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPR
ILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYVG
TQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHY
FSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFV
HCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7122 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acgaagaaaaactacagagccagccagcaagaaatacaacatattgtaaatcgtcacggt
cctgaggcagacagacatctattacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctgtgttacgccattgacaatcctctgcac
taccagaagagtttgaagccttcggcccatcttttcactcaactgagtaaagtccttaag
ctcagcaaagtccaagaggtgatttttggacttgccttgctcaattccagcaacactgac
ctccgtggctttgctgcacagttcatcaagcagaaacttccagatcttctgaggtcatac
gttgacgctgatctcagtggaaaccaggaaggtggcttccaggacattgccatagaggtc
ttgcacctgctgctctcccatctattgtttggccagaagggagccagtggggttgggcaa
gagcagattgacgccttcctcaagacactttgccgagattttccccaagagcgctgtcct
gtggtgctcgcaccacttctgtaccctgaaaaacgggacattctcatggacaggatctta
ccagattcgggggagttagctaagaccatgatggagagttctcttgcagaatttatgcaa
gaagttggatatggcttctgtgctagtgtggatgagtgcagaaacataattattcaatat
ggggtgagagaggtgacggccagccaggtcgccagagttctgggcatgatggcccgaacc
cactctggtctgactgatggtattccactgcagtccatctctgctccaggaagtgggatc
tggagtgatggcaaggataagaatgacggctcgcaggcccacacctggaacgtcgaggtt
cttatcgatgttgtcaaagaagtgaatcccaacctaaacttcaaagaggtgacgtatgaa
ctggatcatccaggtttcatcatccgggacagtaaaggactacaaatagtggtttatgga
attcagagaggactgggcatcacatcagaaaatgctttctttcagctctccttcattcag
cactctctgatgagcccagaggtgttttgttttgctgactacccgtgtcacaccgtggcc
actgacattctgaaggcaccgcccgaggatgacaaccgggagattgccacatggaaaagc
ctggacctggtggagagcctgctgagactctccgaggtgggccagtacgagcaggtgaag
cagctgttcagctttcccatcaagcactgcccagacatgttggtgctggcactgcttcag
atctctacatcctggcacacactgcgccatgagctcatctccaccctcatgcccatcttt
ctcggcaaccatcccaactctgctattatcctgcactatgcctggcacggacagggacaa
tctccttccatccgtcagctcataatgcattcgatggctgagtggtacatgagaggggag
cagtacgaccaagctaaactgtctcgcatcctggatgtggcccaggacttgaagtctcta
tcaatgctgctgaatggtactccatttgcctttgtcattgacctcgctgcacttgcctct
cgccgtgaatacctcaaacttgacaaatggctgactgacaaaatcagagagcacggggag
cctttcatccaggcgtgtgtgacattcctgaagaggcgctgcccgtccattatgggtggt
ctggctccagacaaggaccaacccaaaagtgctcagctgccgccagagaccttagctacc
atgctggcctgcttgaagtcttgtgcagggaatgtgtcccaggagttgtctgagaccatc
cttaccatggttgccaactgcagtaatgtaatgaacaaagctcggcagccgccaccaggg
gtaatgcccaaggtacgggctcctagcaccagcagcctggacgccatttcacctgttcag
atggacccactgtctggaatggggtccctgagcttggggagcacggccacttcccacact
cagagtatgcagggtttccccacctccctcagttcagctttcagtaatccccagtcccca
gcaaaggctttccctccactctcaaatccaaaccctagcaccccttttgggggtattggc
agcctgtcctcacagcttcctgggatggactctggacccctcggctctggcctgggatcc
agtctggggatgccgactgtaagcactgatccctttggcaccaggaagatgagcacaccg
ggtctgaacccaccgacctttcagcagactgacctttctcaggtgtggcccgaggcaaac
cagcactttagtaaagagatcgacgatgaagctaacagttacttccagcgcatttacaac
cacccacctcacccgactatgtctgtggatgaagttctggagatgctgcagaggttcaag
gattccaacatcaagagagagcgggaggtgttcaattgtatgttgaggaatttgttcgag
gaataccggttcttccctcagtacccagacaaggagctgcacatcactgcctgtcttttt
ggtggaatcattgagaaaggtctggtcacctacatggcgctgggcctggctctccgatat
gtccttgaagccttaagaaaaccatttggatcaaagatgtattactttggaatcgccgcc
ctggacaagttcaaaaacagacttaaggactacccgcagtattgtcaacacctggcttca
attgcacactttttgcagtttccccatcacctacaagagtatatcgagtatggccaacag
tcacgggaccccccggtgaagatgcagggctccatcaccacacctggcagtctggcactg
gcacaggttcagtcccaggcccagcctcctataggacttaaagcgccacagccggggcaa
cccagcaccctggtcaccaccaccaccactacaaccacggtagccaagaccaccactatt
acaagaccaacacaaagcaccttcaaaaaggatgtgcctccctccatcaacaccaccaac
atcgacaccctcctggtggccacagaccagacggagaggattgtggagcctccagagaac
gtccaggagaagatagctttcatcttcaacaacctgtctcagtccaacatgacgcagaag
gttgaggagttgaaagagactgtgaaggaggagttcatgccctgggtgtctcagtacctg
gtgatgaagcgtgtcagcatcgagcccaacttccacagtctgtactccaacttcctggac
actctaaagaacccagagtttgtcaagatggtgctgagtgagacttaccgaaacatcaag
gtcctcctgacatcggacaaggcagccgcaaatttctctgatcgttcactgctgaagaac
ctgggccactggttgggcatgataacactggccaaaaacaaacccatcctctacactgat
ctggaagtgaagtctctgctactagaagcttatgtcaaaggtcagcaggagatgctctac
gtggttccttttgtggccaaagtgttggagtccagtttacgaagcatggttttcaggcct
cagaatccctggactatggccatcatgaatgtcctggcagagctgcatcaagaacatgac
ctcaagctaaacctaaagtttgagattgaagttctgtgtaagaacctgtccctggacatc
aatgatctcaaaccaggaaacctcctgaaggacaaggacaaactaaagaaccttgaggac
cagctgtcggcaccaaagaaagaggcaaagcctccagaggagctgctcccagtctctacc
acaggagactttgttccatttgcagctcctccctccaccccagctgccaccaccaccacc
tgcacaagcaccggtcctccgacaccacagttcagctaccatgacatcaatgtgtatgcc
ctggctggtctggctccacacatcaacatcaatgccaacatccctctgctccaggctcac
cctcagctgaagcagtgcgtacgtcagtccatagagcgagctgtccaggagttggtgcat
ccggtggtcgatcgttccatcaagatcgccatgaccacctgtgaacagatcatcaggaag
gactttgccttggattcggaggagtcacgcatgcgcgtcgccgctcaccacatgatgagg
aacctgactgccggcatggccatgatcacctgtcgcgagcccctgcttctgagcatcaat
actaacctgaagaacagttttggaactgcactgagggcacctacacctcaacagagagaa
atgatggaggaggcctcagcccgcatcgcccaagataactgtgaattagcctgctgcttc
attcagaaaacagctgtggagaaggctggtcctgaaatggacaagagactagccacggag
tttgaactgagaaaacatgcacgccaagagggacggcgttactgtgaccctgttgttctg
acctaccaagctgagcgcatgccggagcagatcagactgaaggtcggaggagtggaccca
aaacaactggctgtttatgaggagtttgcgagaaatgttccaggtttcttacccagcaat
gacctctctcagcccactggcttcttggctcagcccatgaagcaacaggcatgggctact
gatgatgtggcccagatctacgagaagtgcatggctgacttggaacaacatcttcatgcc
atctctcctgctctggccatgaaccctttgacccaggccttgcgcagcctgctggaggct
gtggccttggccagaaactccagggatggcattgctgcactcggcctgctgcagaaggct
gtggaaggtcttctcgatgcgaccagcggggccgatgctgatttgttgctgcgctacaga
gagtgccacctgctggtgctcaaagccctgcaggatggacgtgcctatgggccacagtgg
tgcaataaacagattaccaggtgtctcattgagtgtcgtgacgagtacaaatacaatgtg
gaggctgtggagcttctgatcagaaatcatctcgtcaatatgcagcagtatgatttgcac
ctagcacagtcgatggaaaatggattgcactacatggcagttgcttttgccatgcagctg
gtgaagctcctgctggtggatgaccgcagtgtgagccacgtcacagaggccgacctgttt
cacaccattgagactttaatgaggacttgtgcacactccagagccaacgcaccagagggt
cttccacagctcatggatgtcgtccgaaccaactacgaagcaatgattgaccgggcccac
ggaggacccaacttcatgatgcactctgggatttcacaggcatcagaatacgatgatcct
ccaggtctgcgtgagaaagccgagtacctgctgagagagtgggtcaacctgtatcactca
gcggctgctggccgggacagtaccaaagctttctctgcctttgtggctcagatgcaccag
cagggcatcttaaagacagatgatctgatcacgaggttcttccgactctgcacagaaatg
tgtgtggagatcagctaccgagcacaggccgagcagcagcataatccagcagccagtgca
gcgatcatcagagccaagtgttaccacaacctggacgcttttgttcgtctgatcgctctt
ctggtcaaacactctggagaggccaccaataccgtcacaaagattaacctcctcaacaag
gtgctaggtatcgtcgttggtgtgttgatccaagaccacgacgtgcgccagacagagttt
cagcagcttccgtaccatcgtattttcatcatgctgcttctggagctcaatgctcccgaa
catgtcctggagaccatcaacttccagaccctcaccgccttctgctgcgacaataccgtc
cacatgctgagaccctccaaagcaccagggtttgtggatgcctggctggagctcatctcc
catcgcatcttcattgccaggatgttagcacacacaccgcagcagaagggttggcccatg
tacgcacaactgctgattgatctcttcaagtacttggcaccgttcctgaggaatgtagag
ctgaacaaacctatgcaaatcctctataagggtacactgcgagtgcttctggttctgctg
catgacttcccagagttcctgtgcgactatcattacggcttctgtgatgtcattccgccc
aactgcatccaactccgcaacctcatcctcagtgccttcccacggaacatgaggctccct
gatcccttcacacccaatctgaaggtggacatgctgagcgagatcaacattgctccccgt
atactcaccaacttcacgggcgtcatgccgtctcagttcaagaaggacctggactcgtac
ctgaagacgcgatcaccagtcactttcttatctgagctgcgcagcaacctgcaggtgtca
aatgagccggggaaccgatacaacatccagttgatcaatgctttggttctgtatgtggga
actcaggccatcgctcacatccacaacaagggcagcaccccctccatgagcaccatcact
cactctgcacacatggacattttccagaacctggctgtggacctggatactgagggacgt
tacttgttcctgaacgctatcgccaatcagctgcgctaccccaacagccacacccactac
ttcagctgcaccatgctctacctgttcgctgaggccaacaccgaggccatccaggagcag
atcaccagggttctgttggagaggctgattgtgaacaggcctcacccgtggggtctcctc
atcaccttcatcgagctgattaaaaatcctgccttcaagttctggagccatgactttgtg
cactgtgcccccgagattgaaaagctgttccagtccgtagcccagtgctgcatgggacag
aaacaggcccagcaggtgatggaaggcaccggtgccagctag
DBGET
integrated database retrieval system
