Cynoglossus semilaevis (tongue sole): 103379892
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Entry
103379892 CDS
T04866
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csem03036
]
103379892
Enzymes [BR:
csem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
103379892
Chromosome and associated proteins [BR:
csem03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103379892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
CS
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
103379892
NCBI-ProteinID:
XP_008309818
LinkDB
All DBs
Position
6:complement(6497781..6509377)
Genome browser
AA seq
1439 aa
AA seq
DB search
MSKISILKVENPSCLWGRVCHPPKGSKDKTDHYNFLAQMNLFYHNTTLDQHLLKPKLVEG
EVFVVYWSMIKSWCRAVVESVITDSVSCRARCLLVDYGERLIVDKGLIRVAVKKFLELPF
WVRRFQLAGIKPTTLRVSVEKAELMPSSQWDSSATLYLHNLLQASTLTEAVLFETKSDST
SIELYLTVNNIKICVNDDLVAKKFAYYNQGSGECSRSKELDRIAVTFFSSVLTQTVPDSN
QTAVETPPSPVISSSPVSGLNVDWLTASSSPQGQDDVTITEADDRPTVSPQLFSVGQSGS
SSQHATANVCYTSHSTDSTSTKDSNLLKFMTFLNPGCSFQQTNQSIDEHEEPNNKKSYVP
TSMSCSEQEAVSSLHNGESTTGSRPLTDNTGSRPVTDLCSSEKIEATGLEVNHVENDTSG
DTRRSDLSESGSTEATKMCRAEVHWACSRLLEWMNPTPLNSAPESGDEAVIPSDPMGCGV
LVHSVIPIQPCTSLDDAPVTDAFRCLLRRRQYCTLSLADRYGWPAVSRGRNTIIISHSAT
EPLSYLPPLLSHVLLNTIFCSFTSSAGPIVVLLCPNWEKVQTVYDLLVSTRIAHALRPFI
LLLGIGKDEVKTVRIPKNCLLLVTTPFSLVRLMSVHCFMFLRLCHLLLDEADSLFVNAPN
QMATILQHYQKVTSSEGKASCPQQLVAVAKQWSTHMVDLVTTYMPYPCVVISNPEDAALY
GNVQQLILMSSESSKILELLGTLDSSPDVGQKTLIITNSAQEVENVFVAVKNKSLFCLKA
HEGLTDQFDLVIKEWKKNIGHGSHVIMVTTNECLKCFGIRDATCVIHYGFPTSPKLFGSR
LFCMSDNFRNLSERVLTTDQTRGRPEVTKSVLLISEKNASHVVGVLRYLQRTDALLPAQL
LSFAQSVITARENLKTNRPLCSYLKSFGVCRDSSSCPDRHKFSSELDQSELPASGVIEVV
PVHVKTASVFYGRVISKSDNGFESLASEMASYYVDNKPGAEEVLVGGLYAVEEDKAFHRV
KILSVLDRSVCGFFRAFVRFIDVGKEEEVKCYQILQLPEKFHSLPAQAVEIIVCSVKPGD
AEINWHPKATRAISQRVKGLQHRARAVFSLGNTVFVDSMVRVTQVPGMRTVINEYAVQSE
ILKTGLGVSNPEHLDLLRELCQEADTNSGPESSQMNGLNVDSLTLENDVRAEGDLQCNDT
RINTMNKPTIQEPALQHHLDHVCDQTALSESQAADEHVNNQTMKLDLDKRVSDEEDELSP
PTDLAACSNTCTDGFPPDKNPSSVQQNTVSTPETESDASVKSFHPLMTWYQTPDSVIVTV
KLINPESQCCDFYSDRVTYSAGVKGRTYRAVLELYSNIDADRCHWEMKSNEPVIKLVKQQ
QGHWEKFLRNKNIFVSYDMNHVEEDEDRGSVENNGTLFFGSTGEDNCYVNSEDGESDSD
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaatatcgattttaaaggttgagaacccatcttgcctttggggtcgagtttgt
catccccccaagggcagcaaagacaaaacagatcattacaactttcttgctcagatgaac
ctcttctaccacaacactactctggatcagcatctgctgaagcccaagttagtggaggga
gaggtttttgtcgtctactggtcaatgataaagtcatggtgtcgggcagtggtggagtcg
gtcatcaccgactcggtgtcctgcagagctcgctgcctcctggttgactacggagaacga
cttatcgtcgacaaaggacttattcgagtggctgtgaaaaagtttcttgaacttcctttc
tgggtgaggagatttcaactggcaggaattaagccaactaccctacgtgtgtcggtggaa
aaggctgagctgatgccgtccagtcagtgggacagctcagctacactgtacctacacaac
ctgctacaagcatcaaccttgacagaggctgtgctttttgaaacaaagtcagactctacc
tccattgagctctacctgactgtcaataacatcaagatctgtgtgaatgacgaccttgtg
gccaaaaagtttgcatattacaaccaagggtcaggtgagtgcagcagatcgaaggagttg
gatcgaatagccgtcacgttcttctccagcgtcttaacacagacagtcccggactcaaac
cagacggcagtggaaactccaccatctcctgtgatatccagcagtccagtttctggcttg
aatgttgattggctgacagcttcctcttcacctcagggacaggatgatgtgacgatcacg
gaggcagatgacagaccaaccgtctctccacaacttttttctgttggccaatcaggaagc
agctctcaacatgccactgccaacgtgtgttacacgtcacattctacagattctacttca
accaaggactccaatcttttgaaatttatgacatttctgaatcctggctgtagcttccag
cagacgaaccagagtatcgatgagcatgaagagcctaacaacaaaaaatcttatgttcca
acttcaatgtcctgctcagaacaggaggctgtatcctccttacacaatggtgagtctact
acagggtcacgccctctgactgataacacagggtcgcgccctgtgactgatctctgctca
agtgaaaaaatagaagcaactggtcttgaagtcaatcatgttgaaaatgacaccagtgga
gacacacgcaggtcagatttgtctgagtctggatcaacagaagcaacaaagatgtgcaga
gcggaggtgcactgggcctgttcaaggcttctggaatggatgaatcccacacctctgaac
tctgctccagagtctggagatgaagctgtcattcccagtgatccaatgggctgtggagtt
ttggtacattctgtcataccaattcagccctgcaccagtctggatgatgcacctgtgact
gatgcattccgctgcctactccgtaggaggcagtactgcactctgtccctggcagatcgt
tacggctggccggcggtgtccagaggacgcaacaccatcataatctcccacagtgctacc
gagccactcagctacctcccaccactcctcagccatgtcctgcttaacaccatcttctgt
tccttcacgtccagcgctgggcccatagttgtactcctgtgtccaaactgggagaaggtc
cagacagtgtatgacctgctggtcagtaccaggatagcccatgcccttcgtccattcatt
ttgctgcttggcattgggaaagatgaggttaagactgtcaggatcccaaagaactgtcta
ctgctggtgaccacgccattcagtctggttcgtctaatgtccgttcactgtttcatgttt
ctgcgtctgtgccacctgctgctggatgaggccgactctctcttcgttaatgcacccaac
cagatggcaaccatcttacaacattaccaaaaggtgacctccagtgagggcaaggcctcc
tgccctcagcagcttgttgctgtggcaaagcagtggtccacccacatggtggacttggta
actacctacatgccctacccctgtgttgtcatttccaatccggaggacgcggctctctac
ggcaacgtccaacagcttatcctcatgtcctcagaaagcagtaagatcttggagctgttg
ggaacacttgattccagtccagatgttggccagaagacactcatcataaccaactctgct
caggaagttgaaaatgtgtttgtggctgtaaaaaacaaatcattgttttgcctcaaggct
catgagggccttacagaccagtttgacttggtcatcaaggagtggaaaaagaacattggc
catggcagccatgtgattatggtgaccaccaacgagtgtctgaagtgttttgggatcaga
gatgccacctgtgtgatccactacggtttccccacttctcctaagctgttcggcagccgt
ctcttctgcatgtcggacaacttcagaaatctctcagaaagggttttaaccaccgatcaa
acaaggggccgtcctgaagttaccaagtcagtgctgctcatttcagagaaaaatgcgtct
catgtcgtcggagttctgcggtacctgcagcggactgatgctctgctgcccgcacagttg
ctgtcctttgcacagtctgtcataactgccagggagaacctaaagaccaacaggcctctc
tgcagctacctgaaaagctttggagtctgcagagacagcagttcatgtccagatcgccac
aagttcagttctgagcttgatcagtctgagcttcctgcctctggagtcatagaggttgtg
cccgtccacgtcaagacggcgtctgtcttctacggtcgggtcatctcaaaaagcgataac
ggttttgagagtttggcttcagagatggcttcgtactatgttgacaataaaccaggagct
gaagaggtgttagtcggtggtctgtacgctgtagaagaagacaaggccttccacagggtg
aagatcctgtctgttctagacagaagtgtctgcggttttttcagagcatttgttcgcttc
atcgatgtgggaaaagaggaggaggtgaaatgttatcaaattcttcagctgccggagaag
tttcactccctgcctgcccaggctgtggagatcatcgtctgctcggtcaaaccgggggac
gctgagatcaactggcaccccaaggctaccagagccatcagtcagagggtcaaaggtctg
cagcacagggccagagcagtgttcagtttgggaaacacggtctttgttgattccatggtc
cgagtgacacaggtgcccggtatgagaacggttattaatgaatatgctgtccagtctgaa
atcctgaaaactggattgggggtcagtaacccagagcatctggacctgctgagggagctg
tgccaggaggctgacaccaacagtggcccagagtccagtcagatgaatgggttaaatgtc
gactcattgactctggagaatgatgtcagagctgagggagaccttcagtgtaatgacacc
agaatcaacacaatgaacaaacccaccatccaggaaccagctcttcagcaccacctggac
cacgtgtgtgatcaaacagccctgtcagaaagtcaggctgcagatgaacatgtgaacaat
cagaccatgaagctggatttagacaaacgtgtaagtgatgaagaagatgaacttagccct
cccactgacttggctgcatgttccaacacctgcactgatggttttcctccagataaaaac
ccaagcagcgtccagcagaatacggtcagcactcctgaaacagagagtgatgcctctgtg
aaaagttttcatcctctcatgacttggtaccagactcctgacagtgtgattgtcacggtg
aagctgatcaacccagagagccagtgctgtgatttctactctgacagggtcacctacagt
gctggtgtgaaaggtcggacctacagagctgtgctggagctctacagcaacattgatgcc
gaccgctgccactgggaaatgaagtctaatgagccggtcataaagctagtcaaacagcag
cagggacactgggagaaattcctcagaaacaagaacatctttgtgagctatgacatgaac
catgttgaagaagatgaagacagaggttctgttgagaacaacggcacgttgttttttggg
agcacaggggaagataactgctatgtgaactcagaggacggagaaagtgacagtgactga
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integrated database retrieval system
