Cynoglossus semilaevis (tongue sole): 103380216
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Entry
103380216 CDS
T04866
Symbol
hps5
Name
(RefSeq) Hermansky-Pudlak syndrome 5 protein isoform X1
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
csem
Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csem04131
]
103380216 (hps5)
Membrane trafficking [BR:
csem04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
103380216 (hps5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_HPS5
TPR_HPS5
PEP5_VPS11_N
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_WDR36-Utp21_1st
Beta-prop_THOC3
Beta-prop_VPS8
Beta-prop_RIG_1st
Beta-prop_IFT140_2nd
Beta-prop_WDR3_1st
ANAPC4_WD40
Mcl1_mid
Motif
Other DBs
NCBI-GeneID:
103380216
NCBI-ProteinID:
XP_008310287
UniProt:
A0A3P8VC82
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Position
6:12277501..12309699
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AA seq
1117 aa
AA seq
DB search
MSLIPVVPENYTHVLAEFDCLDPLLSALRLDSGRLKCTCLAVSRKWLALGTSAGGLHLIQ
KEGWKQRLILTHKEGSITQVACCPHDEDYIAVATSQGLVVVWELQLERRGRPERVSVSWE
HRGQTVTALCWDTGTLRVFVGDSAGKVSFLRAGSTKLGKGAAFVIFPVQTITTVDSKVVQ
LGYQDGRLLVSSLSRCYLCDTEKEKFWRVGNKERDGEYGACFFPQNKGVLVGQPPLLYCA
RPGSRIWEASFHGEVLSTHQFKQLLGSPPLPLVTYRNEPHYNPGQKSPQSIAFSKLLYLG
DQNLLTWTDSAIYIFTPQTGQLLLWTQVKDLVDIAVYRSDLFCLHSGGRLSHLSLLSAER
CVERLVRRESWPLAASICCMFQHAVTTSRARKTIPIDRLEHLRSQLNATSHQELIGQLDD
VIAKLEPLDSASSSRRSSISSHESFNVLDCGIYRVISRRGSQSDEETGSLINHSLSEEER
LKDFSFVQEEDQVDPDLQSSERPEAERPEQGMQFHLPLSFRPKPTRIALQAVKDSVSSFV
KKTTEKINTLQMNSDLWQRPESREGGHPELSVTTAMYLEEMDNEIYDEIPNTEVDMQDLR
TATQRAISQIHDPLLLLDPVCLGEVLLEWLPVLQRVLGPADLRPASLSDLGEKRWEKDYP
NSYREQQSEEPSFSSEHLTEKKEGLEEAAPELREQEEQCGSAEKLCEVPNGNLSEPVRVL
SPIAVPSDLLADLTQLATLYTEMSCFRKQEHEQALECNVFLRRFFFLLDQERVRRMCLLC
QGEQAEVQRSFIEAMLEVTQSSKVVEVIHRGDLLRSLRSLRELQPWSAPPLLAHLYRLYE
KHGEAAVRSCCQFYPTITPADIWTMAQQSHFLAYLDNLVQSQSEGQRLSFLQTLLEPESL
KQDWLELALTHDAPQRCDTVTPDGQPRWRSHRFSWGYGRLLSLLIRLPANLPSKHKMADS
CRTHGYWMGYLYLCCELQDRAEAFSTVCQLNDISLLEEPEGVEPQTLDEWKLLINLSQQC
GCVVDSEQGRGPDETSLSNGSEDCRGRISLENLTLMLARKTGPDRALAILEECGAPLVLS
PHSKMVCELLRLTEKRQRAMIQMMLERCDRFLWSQHA
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcatcccagttgtaccagagaactacactcatgtcctggcagagtttgactgt
ctggacccacttctgtctgcactgcgcttggactctggcagactcaagtgcacttgtttg
gcggtgtcgaggaagtggttagccttaggaacctcagcagggggtttgcacctgattcag
aaggagggatggaaacaaaggctaatcctcactcacaaggagggatccatcactcaggtg
gcgtgttgtcctcacgatgaagattacatagctgtggcaacaagccagggtctggtggtt
gtgtgggagctgcagctggagcgacgaggacgtccagagagggtcagtgtatcctgggag
cacagaggccagactgtcaccgcactctgctgggacacaggcacgctcagagtttttgtg
ggtgactctgcagggaaggtgtcttttctgcgtgcaggatccaccaaactaggaaagggg
gcagcatttgtcatctttcctgtgcagaccatcaccactgtggactcgaaggtggttcag
ctcgggtaccaggatggccgtctgctggtatcttcactcagccgatgttacctctgtgac
acagaaaaagaaaaattctggcgggttggaaataaagagcgtgacggcgaatacggagcc
tgctttttccctcagaataagggtgtgctggttggtcagccacctctgctgtactgcgct
cgaccagggtctcgaatatgggaggccagttttcacggcgaggtcctgagcacccatcag
ttcaagcagctgctgggcagccctcctctacctctggtcacttatagaaatgagcctcat
tacaacccaggacagaagagcccacagtccattgccttttctaaactgctatatttggga
gaccaaaacctgttgacctggactgattcagccatttacatcttcactcctcagactgga
cagctgcttctgtggactcaagtcaaagacctggttgacatcgcagtctaccgcagcgac
ctcttctgtctccacagcggcggccgtctctcccatctctccctgttatctgcagagcgt
tgtgtggaacgtctagtgcgacgggagtcctggcctctggctgcttctatctgctgcatg
tttcagcatgcagtcaccaccagcagggccaggaaaaccattcctatcgaccgcctcgag
cacctcaggtctcagctcaacgccacctcgcaccaggagctgattggtcagctggatgac
gtcattgctaagctggagcctctggactctgcgtccagcagccgcaggagcagcatctct
tcacatgagagcttcaacgttctcgactgtgggatttaccgtgtgatcagccgcagagga
agtcagtcagatgaggagacgggttcgctcatcaaccattccctgtcagaggaggaaagg
ctgaaagacttcagctttgttcaggaggaagatcaagtggatccagatctacagagcagc
gagcgacccgaggctgagcggccagagcagggcatgcagtttcacctgccgctctcattt
cgacccaaacccacgcgcattgcacttcaagccgtcaaagacagtgtttccagttttgta
aagaagacgacagaaaagatcaacaccctccagatgaactctgacctgtggcagcgacct
gaatcaagagagggcggtcaccctgaactgtcagtgaccacagctatgtatttagaggaa
atggacaacgagatttatgatgaaattccaaacacggaggtggacatgcaggatcttcga
acagcaacacagcgagccatatctcagatccacgaccctttgttgttacttgatccagtc
tgcctcggagaagtcctgctggagtggctgcctgtgctgcagcgagtcctcggccctgca
gatctcagaccagcttccctgagcgatttaggggagaagagatgggagaaggattatcct
aactcctacagggaacagcagtcagaggagccctccttctcctcagagcatcttacagag
aaaaaggaggggctggaggaggcagctccagagctgagggaacaggaggagcagtgtggc
tcagctgaaaaactctgtgaagttccaaatgggaatctgtctgagcctgtgagagtgctg
tctcctatagctgtgccctcagacctcctggctgacctcacccagttggccacgttgtat
acggagatgagctgcttcagaaaacaggagcatgaacaggctttggagtgcaatgtgttc
ctgcgccgcttcttcttcctgctggatcaggagcgagtgaggaggatgtgtcttctgtgt
cagggggagcaggcggaggtgcagcgctccttcattgaggccatgctagaagtcactcag
tcttctaaggtggtggaggtgattcacagaggtgacctgctgagatctctgcgcagtctg
agagagctgcagccctggagtgcacctcctctcctggctcacctctacaggctgtatgag
aaacatggagaggcagctgtccggtcttgctgccagttttatcccaccataactcctgct
gacatatggactatggcccaacaaagccacttcctggcctacctggacaatcttgtccag
tcacaaagtgaggggcaaaggttgtcatttttgcagacacttcttgagccagaatcactg
aaacaggattggttagagctggcacttacccatgatgctcctcagcgctgtgataccgta
acccccgatggtcagcctaggtggcgttcacatcgcttcagttggggttatggacgtctg
ttgtcactgctgatacgattacctgcaaacctgccctccaaacacaagatggcagactcg
tgccgcactcacgggtactggatgggatacctgtacctctgctgtgagctgcaggaccga
gcggaggcgttttccaccgtgtgtcagctgaatgacatcagtctgctggaggagcctgag
ggtgttgaacctcaaaccttggatgagtggaagcttctcatcaatttgtctcaacagtgt
ggctgcgtggtggactcggagcagggccgaggcccagatgaaacaagtttgtccaatggt
tctgaggactgtagaggaaggatcagcctggagaacctcacactgatgctagcccgaaaa
actggaccagaccgagcgttagctatcttggaggagtgtggagcaccgctggttctgtcg
cctcactccaaaatggtctgtgagcttctgagactcaccgagaagagacaaagggcgatg
atccagatgatgcttgaacgctgtgaccggttcctgtggtcccagcatgcttag
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