Cynoglossus semilaevis (tongue sole): 103380530
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Entry
103380530 CDS
T04866
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
103380530 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csem04121
]
103380530 (rag1)
Enzymes [BR:
csem01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103380530 (rag1)
Ubiquitin system [BR:
csem04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103380530 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
zf-RAG1
zf-RING_5
zf-RING_10
U-box
TBPIP_C
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
103380530
NCBI-ProteinID:
XP_008310762
LinkDB
All DBs
Position
6:complement(17855646..17861810)
Genome browser
AA seq
1068 aa
AA seq
DB search
MEDWLERDGPRSSMPAEIPHPHSEYSQWKFKLFRVKSMERAPAPSQPLTAKDAVLGSTMS
AASIIQSESGAGPESVMKLCFGGKSKENVESTGERVDRKLEEMDTHMNHLRCLCRLCGTT
LRKVNGLVHEVHSDLDSRDKGVLRKMGCKSTSWPEVILKVFKVDVTGDTEAVHPLTFCHR
CWMAAIRGGGVCSFSRMIVPEWEPHSSLCTLCFPKKCSFQRTGRKRRRSIPRVQSLAKRS
RWEHVKSIPVGERKVLRPFGNRQHSFILRGWKRPSIQREQWLNISHCTKDHLSTDLISGK
LPVDFLYSFTCLVCAHLLSDPLQLPCGHLFCRSCIQKYTCVVGSHCPACKLPCDPSALIS
PDKAFLSALYSLPLLCPREGCGEQVRLESFHKHIKDHDLRVTDKEIQLSEINNNLLASKG
GRPRQHLLSLTRRAQKHRLRNLKNHVRIFADKEEGGDLKSVCMTLLLLALRSGNEHRQAD
ELEAMIQGRGFGLHPAVCLAIRVNTFLSCSQYHKLYRTVKAISGRQIFQPLYTLRAAEKE
LLPGFHQFEWQPALKNVSTSCNVGIINGLSGWGSSVDDSPIETIARRFRYDVALVSALKD
LEEDIMEGLREKGLEDSACTSGFNVMIKECCDGMGDVNEKHGGGPVVPEKAVRFSFTIMS
VSVIADDDEKEATIFTEPKPNSELSCKPLCLIFVDESDHETLTALLGPIVAERNAMKNSR
LILSLGGLPRFFSFQFRGTGYDEKMVREMEGLEASGSTYICTLCDSSRAQASQNMVLHSI
TRCHEENLERYEIWRTNPFSESIEELRDRVKGVTAKPFMETQPTLDALHCDIGNATEFYK
IFQDEIGEVYRKGNPSREERHSWRSALDKQLRKKMKLKPVMRMNGNYARRLMTLEAVDAV
CELVPSEERREALRELMRLYLQMKPVWRATCPAKECPDQLCRYSFNSQRFAGILSTAFKY
RYNGKITNYLHKTLAHVPEIVERDGSIGAWASEGNESANKLFRRFRKMNARQSKIFELED
VLKHHWLYTSKYLQKFMEAHKDSVEALQATIDPLEKLDDDMTLEANHF
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atggaggattggctggaaagggatggtcccagatcctctatgccagctgagataccccat
ccacattcagagtactctcaatggaagttcaaactgtttagagtaaagtccatggagcgg
gctcccgcgcccagccagccgctgactgcaaaagacgctgtgttggggagcacgatgtct
gcagcttctattatacagtcagagagtggtgcgggtccagagagtgtgatgaaattatgt
tttggtgggaagagcaaggaaaatgtagagagcacaggtgagagggtggataggaagctt
gaggaaatggacacgcacatgaaccacctcaggtgtctctgtcgtctttgtggaacgacc
ttgaggaaggttaatggacttgtgcatgaagttcacagtgatcttgacagcagagacaaa
ggtgtcctgcgcaaaatgggctgcaagtccacaagctggccagaggtcatcctcaaagtc
ttcaaagtggacgtgacaggcgacacagaagctgtccatcctctcaccttctgccatcgc
tgctggatggctgctataagaggaggcggtgtgtgtagtttctccaggatgatcgttcct
gagtgggaaccccactcttcgctctgtactctttgtttccctaagaaatgttcatttcag
cgaactgggagaaagagaaggagaagcattcccagagtccagagcctggcaaagagaagc
agatgggagcatgttaaaagcattcccgttggagaaaggaaagttctaagaccttttgga
aacaggcaacacagttttattctcaggggctggaaaagacccagtattcagagagagcaa
tggttaaatatctcccactgcacgaaagaccacctgagtactgacctaatcagtgggaaa
ctccctgtagacttcctatactccttcacctgcctggtatgtgcccacctgctctctgat
ccactgcagcttccctgtggtcacctgttctgccgcagctgtattcaaaaatacacctgt
gttgtgggatcacactgtccggcctgcaagttgccctgtgaccccagtgctcttatatcg
cccgataaagcgtttttatctgctctgtattccctgcctctgctttgtcccagagaaggg
tgtggtgagcaggtcagactcgagtcttttcacaaacacattaaggaccatgatctgagg
gtaacggacaaagaaatacagttatcagaaatcaataacaacctgctggccagtaaaggt
ggcaggccccggcaacacttgctgtcattaacccgtcgtgcccagaagcaccggctgaga
aatctgaaaaaccacgtgcggatctttgcggacaaagaggagggcggtgacctgaagtct
gtgtgcatgactctgttgctgctcgcactcagatctgggaatgaacaccggcaagcagat
gagcttgaagccatgattcaaggcagaggattcgggctgcaccctgcagtgtgcttggcc
attcgagtgaacactttcctaagctgcagccagtatcacaagttgtaccgcacggtcaaa
gctatcagcggtcgccagatctttcagcccctctacaccctccgagccgcagagaaggag
cttctccctggctttcaccagtttgaatggcagccagctctgaaaaatgtatctacatct
tgcaatgtgggcattattaatgggctttctgggtggggttcttcagtagatgactcccca
attgagaccattgcaaggagatttcgctacgatgtggcacttgtgtcggcgttaaaggat
ctggaggaagacatcatggaggggctgagggaaaaaggactggaagacagcgcctgcacc
tccggttttaacgttatgatcaaagaatgttgtgatggcatgggggatgtcaatgagaag
catgggggaggaccagttgttcctgagaaagctgtccgtttctctttcactattatgtct
gtctctgtcatagctgatgatgatgaaaaggaggcaacgatcttcactgagccaaagcca
aactcagaactgtcctgcaagcccctgtgcttaatttttgtagatgagtcagatcacgag
acactcacagctcttcttggtcccattgttgcagagcgtaatgcaatgaaaaacagcaga
ctcatcctatccttgggcggcttgccccgctttttcagctttcaattcagaggcacagga
tatgatgagaagatggtacgggagatggaagggctggaagcctcagggtccacatatatc
tgtactctgtgtgactcaagtagggcacaggcatctcagaacatggtgctacattccatc
actcgctgtcatgaagagaaccttgagcgctatgaaatctggagaaccaaccccttttct
gaatctatagaagaactgcgagacagagtcaaaggggtcacagccaaacccttcatggag
acacagccaactcttgacgccttacactgtgacatcggcaatgctactgagttctacaaa
attttccaggacgagatcggggaggtttaccgtaagggcaaccccagccgggaggaacgc
cacagctggaggtcagctctggataaacagctgaggaaaaagatgaagcttaaaccagta
atgaggatgaatgggaactacgcccgcaggctaatgaccctggaggctgtggatgcagtg
tgtgagctggtgccatcagaggagaggagagaggccctgagggagcttatgaggctgtac
ctccagatgaagcctgtgtggcgggctacttgcccagcaaaggaatgccctgaccagctg
tgccgctacagcttcaactcccagcgctttgctggcatcctctccactgccttcaaatat
aggtataatggaaagataaccaattaccttcacaagactctggcacatgttcctgaaatt
gtggaaagagatggatcaataggagcctgggccagtgaggggaatgaatcggcaaacaag
ctgttcagacgttttcggaagatgaatgcacgtcaatcaaagatctttgaactggaagat
gtgttaaaacatcactggctctacacctcaaagtacctgcagaagtttatggaggctcac
aaagactcggtcgaagctctgcaggccacaattgacccattagagaagctggatgatgac
atgactctggaagcaaatcatttttga
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