Cynoglossus semilaevis (tongue sole): 103381072
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Entry
103381072 CDS
T04866
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csem03041
]
103381072 (ddx1)
03016 Transfer RNA biogenesis [BR:
csem03016
]
103381072 (ddx1)
Enzymes [BR:
csem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103381072 (ddx1)
Spliceosome [BR:
csem03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103381072 (ddx1)
Transfer RNA biogenesis [BR:
csem03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
103381072 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
103381072
NCBI-ProteinID:
XP_008311482
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Position
7:complement(8837508..8843112)
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AA seq
740 aa
AA seq
DB search
MAAYSEMGVMPEIAQAVEELEWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRAAVKTGGAIFNNWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRVGWSTNQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKAQISFSKNGTELGVAFEIPQNLMNQAFFASCVLKNAELKF
NLGGEDFKNPPKGGFVALNQAPEGHTVKSSQTGSAKVSQVKTSSNSPKALIIEPSKELAE
QTLNNVKQFKKYVENPKLRELLVIGGVAAKDQLSALEQGVDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKSDRLWERLGKNHIRTDEVHAKDNTRPGAN
SSEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKGNQL
SCVCLHGDRKPHERKNNLDRFKRKEVRLLICTDVAARGIDISGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEDGGCTIWYNEKELLS
DIEEHLKCTITQCESDIKVPLDEFDGKVTYGQRRALGGGNYKGHVDVLAPTVQELSCLET
EAQTSFLHLGYLPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtattctgaaatgggtgttatgcctgaaatcgcacaggctgtggaagaactg
gagtggctgttgccaactgacatacaggcagagtcgattccccttattcttggtggagga
gatgtacttatggcagcagaaactggcagtggtaaaactggagccttcagtatccctgtc
atccagatagtgtatgaaactctaaaagatcagcaagaaggaaagaaaggaagagcagct
gtcaagactggaggagcaatttttaacaactggcagatgaatccttatgaccgcagtcca
gcgtttgcgatcggtccagatggactgtgctgccagagcagggagttcaaagagtggcac
ggctgtcgctctaccaaaggtgtcaccaaaggcaagtactactatgaggtgacctgccat
gaccagggtctgtgtcgagtaggctggtccaccaatcaggcagcattggaccttggaact
gataaatatggttttggttttggaggaactggaaaaaagtcaaacaacaaacagtttgac
agctatggagaggagtttaccatgcatgatacaattggatgctacctcgatttagacaaa
gcccagatatcgttctccaaaaatggcaccgaactgggtgtggcatttgagattccgcag
aatctgatgaaccaggccttctttgcttcttgtgtcctaaagaatgcagagctgaagttc
aatcttggtggagaagactttaaaaaccccccaaagggtggatttgttgccctgaatcag
gcaccagagggtcacactgtgaaatcctcacagacaggcagcgccaaagtcagccaggtg
aaaacatcgtccaactcccccaaagctctgatcatcgagccgtctaaagagttggctgag
cagaccctgaacaatgtgaaacagtttaagaaatatgtggaaaaccctaagctgagggaa
ctgctggtgatcggtggcgtggctgccaaagaccagctgtctgctctggaacaaggggtc
gacattgtggtaggaactcctgggagactggatgacctcatatcaacagggaaactcagt
ctgtcccaagttcgctttctggtcctggatgagtgtgatggcctcctgtcagcaggatat
acagacttcatcaacagaatccacaaccaaatcccacaggtgacctctgatggcaagagg
ctgcaggtgatcgtctgctcagccactcttcactcttttgatgtcaagaagttgtctgag
cgcattatgcattttcccacctgggtggacctgaagggggaggactccgtccctgagacc
gtccaccatgtggtggtgcccgtcaatcctaagagtgatcgtctctgggagcgtctgggc
aaaaaccacatcaggactgatgaagtccacgccaaagacaacaccagaccaggagccaat
tcttcagaaatgtggtctgaagccataaagatactgaaaggcgagtacacagtgagggcc
atcaaagagcacaaaatggaccaggctatcatcttctgccgcaccaagatcgactgcgac
aacatggagcaatacttcatccagcagggaggaggccccgacagtaaaggcaaccagttg
tcttgtgtttgtctccacggtgatcgcaaaccacatgagcgtaaaaataacctggatcgt
tttaagagaaaagaggtgaggctcctgatctgcactgacgtagcggccagaggaattgac
atcagtggagtcccttatgtgattaacgtgactctgccagatgagaagcagaactacgtt
catcgcattggcagagttggaagagctgaaagaatgggtttggccatctccttggttgct
atggagaaagaaaaggtgtggtaccatgtttgtccaaaccgaggcagaggttgttacaac
acccgactgaaggaggatggaggttgcaccatatggtacaatgagaaagagctcctgtct
gacatcgaggagcacctgaagtgcactatcacccagtgtgagtcggacattaaagtacct
ctggatgagtttgatggaaaggtcacctatggtcagcgcagggctttgggaggtggaaac
tacaagggtcatgtggatgtcctggctccaaccgtccaggagctttcttgcctggagacc
gaagcccagacttccttcctccaccttggatatttgccaaaccagcttttcagagccttc
tga
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