Cynoglossus semilaevis (tongue sole): 103381539
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Entry
103381539 CDS
T04866
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103381539 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csem03400
]
103381539 (msh2)
DNA repair and recombination proteins [BR:
csem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
103381539 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
103381539
NCBI-ProteinID:
XP_008312167
UniProt:
A0A3P8VP88
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Position
8:2672604..2681577
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AA seq
934 aa
AA seq
DB search
MAVQPKQNLSMDSAVESGFLNFIFSMPDKPDTTFRIFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKYLGSGSRKLESVVLSKLNFDAFVKDLLLVRQYRVELYRNHSKNSKEHDWRIEYKA
SPGNLIQFEEILFGGGAGAEGCAGVVAVRCASAADGQRVVGVGYVDAAQRNMGVCEFPDN
EIFSNLESLLVQLGPKECLLTQGEGSADSKLRQVVERGGMLVSDRKRADFSSKDIVQDLN
RLLRAKRGEAAASNSLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLDLGQFMRL
DNAAVRALNLFQASPDDASRAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLDL
VESFVCDSELRHTCQEDLLRRFPDLHRLAKKFHRHSATLQDCYRVYQAVNQIPALITALE
RYSGNFQVLLEAVFVSPLRDLQNDFTKYQEMIETTLDMNQVDHHEFLVKASFDAVLTELR
EKMDELDESMQAVLSSAARELGLEAGKTVKLESNAMLGFYLRVTCKAEKGLRNNKKFTML
DVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIINIASGYVDPLQTLSDVIAQL
DAVASFAVASVSAPVPYVRPQILDDGSRRLELLQARHPCMENDPDTSFIPNDISFVQGKK
NFYIITGPNMGGKSTFIRQVGVVALMAQIGCFVPCEKAELSVFDSILARVGAGDSQLKGV
STFMAEMLEIAAILRSATEKSLVIIDELGRGTSTYDGFGLAWAISEHIASKISSFCMFAT
HFHELTALAAQQSSVHNLHVTALTSHDTLTMLYRVRAGVCDQSFGIHVAEMANFPPWVVA
VAKEKAEELEEFQEPTAVVSSEDEKPVAKRRLTDKQVGENLIQDFLEKAKSVPAASMSEE
EVKEELRRMKEELVSKNNSYVAEILARCLPVKSA
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaacagaatctgtccatggacagtgcagttgaaagtgggttttta
aactttattttctccatgccggataaaccagacaccactttcagaattttcgaccgcaac
gactactacaccgttcacggcaaagacgccatattcgcggcgaaggaagttttcaagacc
aacggcgtcatcaagtatttgggatcagggagtcgcaagctggaaagtgttgttttgagc
aagctgaactttgacgcctttgtcaaagacttgctgctggttcgacagtatagagtagag
ctctacaggaaccacagcaaaaacagcaaagagcatgactggaggattgaatacaaggcc
tctccaggaaacctgatccagtttgaggagatcctgtttggtggaggagctggagcagag
ggctgcgcaggagttgtagctgttcgctgtgcttcagcagccgatggacagcgtgttgtc
ggcgtaggatatgtggatgcagctcaaagaaatatgggagtgtgtgagtttcccgacaat
gagatattctccaacctggagtctctgctcgttcaacttggccccaaagaatgtttgtta
acccaaggtgaaggaagcgctgatagtaaactacgacaggtggtagaacgtggtggcatg
ctggtctctgacagaaagagagcagattttagcagcaaggatatagtgcaggatctgaac
aggctgcttagagccaagagaggagaggcagcagccagcaactcactgccagagctggac
aaacaggtggccatgtcatgcctggctgcagtggttcgtttccttgagctgctctctgac
gagtcaaactttaattcctttagtctgaccacactagacctgggtcagttcatgagactg
gataatgccgcagtgagggctcttaaccttttccaggcttcacccgacgatgccagcaga
gcacattctttagctggtctattgaacaagtgccgcacgccccagggtcagcggctggtc
aaccagtggatcaagcaacctctcatggacaaaaccaagattgaagagaggctggacctg
gtggagagctttgtatgtgactctgaactcagacacacatgtcaggaggatctgctgcgg
cggtttccagaccttcaccgcttggcaaagaagttccaccgtcacagtgccacactacag
gactgctaccgtgtctaccaggccgtaaaccagatccctgcactgatcacagctttagag
agatactcaggcaacttccaggtcctgttggaagccgtgttcgtttctcccctcagagac
ctgcagaatgatttcaccaagtatcaggagatgattgaaaccactctggatatgaaccag
gttgaccaccacgagttcctggtgaaggcgtcatttgacgcagtgttaactgaactgaga
gagaagatggacgaattggatgagagcatgcaggctgtgttgagcagtgcagccagagaa
ctcggtttggaggctggtaagacggtgaagctggagtcgaacgccatgctgggtttttat
ctgagggtcacctgcaaagcggagaagggcctgaggaacaacaagaaatttaccatgctg
gacgtccagaagaatggtgtgcgattcacaaacagcaaactgagctctctgaatgaggag
tacaccaagagcagggaggagtatgaggaggcccagaatgcaatcgtgaaagagataatc
aacatcgcctcaggttacgtggaccccctgcagacgctgagcgatgtgatagcacaactg
gacgcagtggccagttttgccgtggcatctgtctcggctcccgttccatatgttcgacct
cagatcctagatgatggcagccgccgcttagagctgctgcaggccaggcatccctgcatg
gagaacgatccagataccagcttcatacccaacgacatcagctttgtccagggaaagaag
aacttctacatcattacaggtccaaatatgggtggtaagtcgactttcatccgccaggtg
ggtgtggtcgctctgatggctcagatcggctgttttgtaccatgtgaaaaggcagagcta
agtgtgttcgacagcatcctggccagagtgggggctggagacagccagttgaagggggtg
tccaccttcatggctgagatgttggaaattgctgccattctacgctcagccacagagaaa
tcgctggtcataatcgatgagctgggcaggggcacgtccacctacgatggctttggactg
gcctgggccattagtgaacacatagcatccaagatcagcagcttctgtatgtttgccacg
cacttccatgagttgacggcacttgctgcacaacaatccagtgtccacaaccttcacgtg
acagccctgacatcccatgacacactcaccatgctgtacagagtcagagcaggtgtgtgt
gatcagagttttggtatccacgttgccgaaatggcaaatttccctccctgggtggttgct
gttgcgaaagagaaggcggaagaactggaggagtttcaggagcccacggcggtggtgtct
tcggaggatgaaaagcctgtggccaaaagacggctcacagacaaacaagtgggagaaaac
ctgatccaggacttcctggaaaaggccaagtcggttccagctgccagcatgtctgaggag
gaggtgaaggaggagctaaggagaatgaaggaggagctggtttccaaaaacaactcgtac
gtagcagagatcctggcacgctgtcttcctgtgaaatcagcctga
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