Cynoglossus semilaevis (tongue sole): 103381569
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Entry
103381569 CDS
T04866
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04140
Autophagy - animal
csem04148
Efferocytosis
csem05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
103381569 (vps39)
04148 Efferocytosis
103381569 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
103381569 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csem04131
]
103381569 (vps39)
Membrane trafficking [BR:
csem04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
103381569 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
Pep3_Vps18
WD40_like
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
103381569
NCBI-ProteinID:
XP_008312215
UniProt:
A0A3P8VQ28
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Position
1:complement(15934521..15953440)
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AA seq
876 aa
AA seq
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MHDAYEPVPILEKLPLQIDCLAAWEDCLLVGTKPGHLLLYRIKNNAGRHHFEVTLEKSNK
NFSKKIQQLFVVPQYKILVSLLENNIYVHDLLTFQQITVLSKARGASLFACDLQQTSTGE
ETLRMCVAVKKKLQLYYWKDRDFHELQGDFGAPDIPKSMAWCGNSICVGFKRDYYLFRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFISSAGQNIVYVASNHFVWRLVPVSI
AKQIQQLLQDKQFELALQLAKMKDDSDGDKKRQIHDIQSLYAFNLFCQKKFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDFRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDRSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIDES
EQVLKKAHKYSELIILYEKKGLHQKALQVLLEQSTKANSPLKGHERTVEYLQRLGVENMG
MIFEFSPWVLKNCPEDGLKIFTEDLTEVETLPRDKVLNFLKDGFKELAIPYLEHIINVWD
EKEPEFHNVLTLLYLESVQVLMKEYLKSLPEGVPAVAAGQEEGKLGEFRKKLLFFLETSS
SYEPSRLISNFPFDGLLEERALLLGRMGNHEQALFIYVHILKDTSMAEEYCHRHYNSSVE
GNKDVYLSLLRMYLSPPDVRCLGPIKMEVSGPQANLQAALQVLELHHSKLNTTKAINLLP
ANTPIREIRVFLESVLEEKAQRKRCNQVLKSLLQAEYLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNSVVVHYFCCKDRTVCPSEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcgtatgaaccagtgcctatcttggagaaacttcctcttcagattgactgc
ctggcagcctgggaggactgtctgcttgtgggaacaaaaccggggcatcttcttctttat
cgtatcaaaaacaatgcaggtagacatcactttgaggtgacactggagaagtccaacaag
aacttctcaaagaagattcagcagctttttgttgtccctcagtacaaaatccttgtcagc
cttctggagaacaacatctacgtccatgacctcctcacgttccagcagatcactgtgctg
tccaaagcacgaggagcctcgctgtttgcatgtgacctgcagcaaacgtctacaggagag
gaaacgctgaggatgtgtgtggcagtgaagaagaaactgcagctgtactactggaaggac
agggactttcacgagctgcagggtgactttggtgctccagatattccaaagtccatggcc
tggtgtggaaactccatctgtgttggtttcaagcgagactattacctttttcggatggac
gggcgtggctccattaaagaactgttccccactgggaaacagctggaacctctagttgcc
ccactggctgatgggaaggtggctgttggacaggatgacctcactgtggttctgaatgaa
gaaggcgtttgtactcagaagtgcgccctcaactggacagacatccctatagcaatggag
caccagcctccgtacatcatcgctgttcttcctcggtacgtggagatccggacctttgag
cctcggttgttggtgcagagtgtggagctgcagaggcctcgcttcatcagctcagcaggg
caaaatattgtgtatgttgccagcaaccattttgtgtggcgcctggtgccagtgtccata
gccaaacagatccaacagctccttcaggacaaacagtttgagctggcgcttcagctggcg
aagatgaaggatgactcagatggagataaaaagcggcagattcatgacatccagagtctt
tacgccttcaatctcttctgtcagaagaaatttgatgactccatgcaggtgtttgccaaa
ctgggcacagatcccactcatgtgattggactttacccagatctgctcccgtcagacttc
cgtaaacagctgcactatcccaaccctctgcctacactgtcgggggcggagctggagaag
gctcacctggctctgatcgattacctcacacagaaacgcagtcacttggtgaaacagctg
aacgactccgaccgttcgacaacatctccactcatggagggaacgccgacgataaagagc
cgcaaaaagctgctgcagatcatcgataccacgctgctgaagtgttacctgcacaccaac
gtggcgctggtgtcccccctccttcgtctggagaacaaccactgccacattgacgagagt
gagcaggtgctgaagaaggctcacaagtacagcgaactgattatcctgtatgagaagaag
ggtctgcaccagaaagctctgcaggttcttctggaacagtccaccaaggccaactctcca
ctgaagggccacgagcgaacggtggaatacctccagagactgggagtggagaacatggga
atgatctttgagttttcaccctgggtgctgaagaactgtcctgaggacggactgaagatt
ttcactgaagacctgacggaagtggagactttgcctcgggacaaggtgctgaacttcctg
aaggacggcttcaaagagctggccattccatatctggagcacataatcaatgtgtgggac
gagaaggagccggagtttcacaacgtcctgaccctgctctacctggagagtgttcaagtc
ctgatgaaggaatatctcaaatctctgccagaaggagttccagctgtggctgcaggacaa
gaggagggaaaactgggagagttcaggaagaagctgctgtttttcctggaaacttccagc
agctacgaaccatccagactcatcagtaactttccctttgatggtctactggaggagcgg
gctttactcctgggtcgaatgggcaaccacgagcaggcgctcttcatatacgtgcacata
ctgaaggacaccagcatggctgaagaatactgtcaccgacactacaacagctcagtcgaa
ggaaacaaagatgtttatctgtcgctgttgagaatgtacctgtcgcctcctgacgtccgc
tgtctggggcccatcaagatggaggtgtctgggcctcaggccaacctgcaggcggctctg
caggtcctggagctccaccacagcaaactcaacaccaccaaggccatcaatctgctcccg
gcaaacactccgatccgggagatccgggttttcctggagagcgtcctggaggagaaggct
cagaggaaacgctgcaaccaggtcctgaagagtctgctgcaggccgagtacctcagggtg
caggaggagagaatcttccaccagcaggtgaagtgtgtcatcacagaagaaaagacctgc
agagtctgcaaaaagaagatcggcaacagtgccttcgccaggtacccaaacagtgtggtg
gttcattacttctgctgcaaggaccgcaccgtgtgtcccagcgagcagtaa
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