Cynoglossus semilaevis (tongue sole): 103382483
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Entry
103382483 CDS
T04866
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csem03016
]
103382483 (rtcb)
Enzymes [BR:
csem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
103382483 (rtcb)
Transfer RNA biogenesis [BR:
csem03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
103382483 (rtcb)
Prokaryotic type
tRNA splicing ligases
103382483 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
103382483
NCBI-ProteinID:
XP_008313521
UniProt:
A0A3P8USK7
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All DBs
Position
8:complement(16641269..16645865)
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AA seq
505 aa
AA seq
DB search
MSRNYNDELQYLEKISSNCWRIKKGFVPNMQVEGNFYVNDSLEKLMFEELRNACRGGGIG
GFLPAMKQIGNVAALPGIIHKSIGLPDVHSGYGFAIGNMAAFDMNDPDAVVSPGGVGFDI
NCGVRLLRTNLDERDVQPVKEQLAQSLFNHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAEVFTTTPDDLDMHVIYDVSHNIAKVEE
HIVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEHGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaaattacaacgatgagctgcaatatttggagaagatctccagcaactgctgg
agaatcaaaaaaggctttgttcccaacatgcaggttgaaggaaatttctacgtcaacgat
tctctggagaaactgatgtttgaggagcttcgtaacgcctgtcgaggtggaggtattggt
ggttttcttccagccatgaagcagatagggaacgtggcggcgctgcctggtatcatacac
aaatccattggccttccagacgtccactcagggtacggttttgcaatcggaaacatggcg
gcctttgacatgaatgaccctgacgctgtcgtgtctccaggtggcgtcggcttcgacata
aactgtggcgtacgtctcttgaggacaaacctggacgagcgcgacgtgcagcccgttaag
gagcagctggcacagtcgcttttcaatcacattcccgtgggagtcgggtccaaaggagtc
attcccatgggagccaaagacctggaggaggcgctggagatgggtgtggactggtccctg
agggagggctacgcctgggctgaggacaaggagcattgcgaggagtacggcaggatgctg
caggccgaccccaacaaggtgtcgtccaaggccaagaagcgaggtctcccccagctggga
actctgggagcaggaaaccactacgctgagatccaggtggtggatgagatctacaacgac
tacgccgccaagaagatgggcatcgaccacaaaggtcaggtgtgcgtgatgatccacagc
ggcagccgaggccttggtcaccaggttgccacagatgctctggttgccatggagaaggcc
atgaaacgggataagatcacagtgaacgaccgtcagctggcgtgcgctcgcatcacctca
caggaaggtcaggactacctgaaggggatggcagcggcgggaaactacgcctgggtgaac
cgttcgtccatgacctttctgactagacaggccttcgcagaagtcttcaccaccacacca
gacgacctggacatgcacgtcatctacgacgtctctcacaacatcgccaaagtggaggag
cacatcgtggacgggaagcagaaaacactgctggttcaccgcaaaggctccaccagagcc
ttcccgccccaccatccactcattcctgtcgactaccagctgacaggtcagccggtgttg
atcggagggacgatgggaacatgcagctacgtcctcacagggacggaacatggaatgacc
gaaaccttcggaaccacctgtcacggagcaggtagggctctctctcgagccaagtctcgc
agaaacctggacttccaggacgtcctggacaaactggccgacatgggcatcgccatcaga
gtggcttcacctaaactggtcatggaagaggctcctgaatcgtacaaaaacgtgacggac
gtcgtgaacacgtgtcacgacgcaggaatcagtaagaaggcgataaaactgcgacccatc
gctgtgataaaaggctga
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