Cynoglossus semilaevis (tongue sole): 103383341
Help
Entry
103383341 CDS
T04866
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 isoform X1
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103383341 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csem03021
]
103383341 (smarca5)
03036 Chromosome and associated proteins [BR:
csem03036
]
103383341 (smarca5)
Transcription machinery [BR:
csem03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
103383341 (smarca5)
Chromosome and associated proteins [BR:
csem03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
103383341 (smarca5)
RSF complex
103383341 (smarca5)
WICH complex
103383341 (smarca5)
B-WICH complex
103383341 (smarca5)
NORC complex
103383341 (smarca5)
BRF complex
103383341 (smarca5)
NuRF complex (fruit fly)
103383341 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
DBINO
Myb_DNA-binding
AAA_14
Motif
Other DBs
NCBI-GeneID:
103383341
NCBI-ProteinID:
XP_008314646
UniProt:
A0A3P8UF68
LinkDB
All DBs
Position
9:2382484..2389505
Genome browser
AA seq
1034 aa
AA seq
DB search
MSDILNCVEQREEMTELEETGGAEEKSDSSDAGKESSSDAGPDGQDASPSSSKSKDSAPG
YEEKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSAG
DNRHRRTEQEEDEELLNESTKTTNVCTRFDDSPSYVKTGKMRDYQVRGLNWLISLYENGI
NGILADEMGLGKTLQTIALLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAVC
LIGDRDERTALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEKSK
LSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWFDTNNCLGDTK
LVERLHTVLRPFLLRRIKADVEKTLLPKKEIKMYVGLSKMQREWYTKILMKDIDILNSAG
KMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKMKQQG
SRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINAYNEPNSSKFIFMLST
RAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVFRFITENTVEERIVE
RAEMKLRLDSIVIQQGRLVDPSANKLGKDEMLSIIRHGATHVFASKESEITDDDIDAILE
RGERKTMEMKEKLSTLGESTLRNFTMDTENSSVYTFEGEDYREKKKVITNWIEPPKRERK
ANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYK
VPRNPDVSNSAQVQKEEQGKIDEAEALTEEELEEKENLLQQGFTIWNKRDFNQFIKANEK
WGRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKK
ALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRN
SPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKTSSAQKRKPE
GTPEGRGRKKKLKL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatatcctaaactgcgtggaacagcgggaagagatgactgaacttgaagaaacc
ggaggggcagaggagaagtctgattcttcagatgctggaaaagagtcctcttcagatgct
ggcccagacggtcaagatgcatccccctcctcttcaaaatcaaaagactctgctcctggc
tatgaagagaaagttcaaacagatcggaccaacagatttgagtacctgttgaagcaaaca
gaactgtttgctcatttcatccaaccagctgcacagaagacccctacctctccactcaag
atgaagcctggacgtcctcgtatcaagaaagatgagaaacagaacctgttgtcagctggc
gacaaccgccatcgccgcacagagcaagaggaggacgaggagcttctaaatgagagcacc
aagactacaaatgtctgcactagatttgacgattctccttcttatgtgaagacaggaaag
atgagggactatcaggtccgtggtttgaactggctcatctctctgtacgaaaacggcatc
aatggtattcttgcagatgaaatgggtttgggaaagaccctccagaccattgctcttctt
ggttacatgaagcactacaggaacatccctggcccccacatggtgctggtgcctaagtcc
acactttacaactggatgaatgaattcaaacgatgggtgccttccctccgagccgtctgc
ctgattggagatcgagatgaaaggactgccctgatcagagacgtgctcctgcccggagag
tgggacgtctgtgtgacatcatacgagatgctcatcattgaaaaggcagtgtttaagaaa
ttcaactggaggtacctggttattgatgaagcccacaggatcaagaatgaaaaatccaag
ctgtcagaaattgtgcgagaattcaagaccaccaatcgtctgctactgactggaacacct
ctccaaaacaacctccatgaactgtgggctctgctcaactttctgctgcctgatgtcttt
aactcagcagaggactttgactcctggtttgacaccaacaactgcttgggcgacacaaag
ttggttgaacgtcttcacactgttttgcgtcctttcttgctccgacgtattaaagctgat
gtggaaaagaccctgcttccaaaaaaagagatcaagatgtatgtgggtctgagcaagatg
cagcgggagtggtacacaaagattctgatgaaggacattgacatcctcaactcggctggt
aaaatggacaagatgcgtctgttgaacgtcctcatgcagctgagaaagtgctgcaaccat
ccttatctgtttgatggcgccgagccggggcctccatacacaactgacctccacctggtg
gtgaacagtgggaagatggtggtgctggacaaactgctgcccaagatgaaacaacaaggt
tcccgtgtgctcatcttcagtcagatgaccagggtgctggacatcttagaggactactgc
atgtggaggaactatggctactgtcgactggatggtcagacacctcatgaagaacgacag
atctccatcaatgcatacaatgagcccaacagcagtaagttcatcttcatgttgagcacc
agagctggtggactgggtatcaacctggctacagctgatgtcgtcatcctctacgactct
gactggaacccacaggttgatctgcaggccatggatcgagctcacaggattggtcagcag
aagcaggtgcgtgtcttccgcttcatcaccgaaaacacggtggaggaacgcatcgtagag
agagctgagatgaaactacgtctggactccattgtcattcagcagggacgtctggttgat
ccaagcgccaacaaactagggaaggacgaaatgttgtccatcatcaggcacggtgccacg
catgtgttcgcctccaaagagagcgagatcacagacgatgacattgatgctatcctggaa
aggggggagagaaagaccatggagatgaaggagaagctgtctacactgggcgagagcacc
ctgaggaacttcaccatggacacagagaacagcagcgtgtacacgtttgagggggaagac
tacagagaaaagaagaaggttattaccaactggatcgagccacccaagagagaaaggaaa
gccaactacgcggtggatgcctacttcagagaagctctgcgtgtcagtgaacccaaggca
cccaaggctcctcgtcctccaaagcagccgaacgtgcaggacttccagttcttccctcca
cggctctttgagctcctagaaaaagagattcttttctatagaaaaaccataggctacaag
gttcctcgtaacccagacgtgtcaaactcggctcaggtgcagaaggaggagcagggtaag
attgatgaggccgaggctctgacggaggaagagctggaggagaaggagaacctgctacaa
cagggttttactatttggaacaagcgtgacttcaaccagttcatcaaagccaatgagaag
tggggcagagatgatatcgagaacattgccagagaagtggaaggaaaaacaccagaagaa
gtcatggaatattctgctgtgttctgggagcgctgtaatgagctgcaggacattgagaag
atcatggcccagatagagagaggagaggccaggattcagaggaggattagcatcaagaaa
gcacttgactcaaagattggtcgttataaggctcctttccatcagcttcgcatttcttac
ggcaccaacaaaggcaagaactacacagaggaggaagatcgcttcctcatctgtatgctt
cacaagctgggcttcgacaaggagagcgtttacgatgagctgcgtcagtgcatccgtaac
tcgcctcagttccgcttcgactggttcctcaagtccaggactgcgatggagcttcagagg
cgatgcaacacactgatcacactaatagagagagagaacatggagctggaggagagagag
aaggcagagaagaagaagaggggcccaaagaccagctcagctcagaaacgaaagccagag
ggaaccccagaagggcgaggacgcaagaaaaaactcaagttgtga
DBGET
integrated database retrieval system
