Cynoglossus semilaevis (tongue sole): 103383450
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Entry
103383450 CDS
T04866
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03440
Homologous recombination
csem03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103383450 (palb2)
03460 Fanconi anemia pathway
103383450 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csem03400
]
103383450 (palb2)
DNA repair and recombination proteins [BR:
csem03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
103383450 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
103383450 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
FB_lectin
Motif
Other DBs
NCBI-GeneID:
103383450
NCBI-ProteinID:
XP_008314780
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Position
9:complement(4394535..4401576)
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AA seq
1268 aa
AA seq
DB search
MFYSVISANLTYVFLSRVQRWLSESVGTMERDVEEQLKTTLMYDDKEKLRRKLEILQREY
VRTAEKLKRAERLEAVRHHVKNRIIQQNHQGQSDKDVTSKLQISQSPLKLNPGSAAADNG
SWDNDNTRGRHVIRILLPSDSSCQQSPDPCHDGEGGQRFSPALRLRSRRSRLRLERRSTE
ASVNPDNHEEAEEKGKEMESFKIEKEVEEIQRATVEVKYEEEEGTVNETEDLFSGSTSLT
HSHWETHPYTANIGDKEEEEKTPLESSALPVKFGNLTEDTEQTSRVCTLKRKRKQEEERN
DVEMNKCHGPPVSSAENRNNNAEQNATVKKENKSYNENNVVVKKRQSVGLLDSCTLVEGL
IFPAEYYVRTTRRMTMSQSQPDMQAVILSQLNMGRHRRSRGRGRGANTRRWQSDVCSGQT
ASSPLTTSSGHEPSNNSLVDGAAEVTVDHQSSSHITERNQSSPGTCTPAARRGGRRKGTR
ARRRRQTPVSGRDEQPTPPLSSSPCPPDPVTDAGQTVLHLSTPTQHAPAVTGDQSGPASG
QQQNVYPMFVRRSNREKSQMSQSPSSCQSLLLPSSPPAQTPVLPLPSLTSISVLKTLVSL
ETHQDFHLPDDQFASLKLQKLQQVVTEAGVEHFSSPFCKTRSSVSRGLPPCSSNDTDLSL
PLTLSLTPTVAKSQNRAPMNGKSLNKQSKRSLSEEPLSSRDQCENVKSQPGSVAVSVIQP
SAATEQTTDTNPETQPSERSAESPRGEVNDQVTGQSTDYGVEQSALERDHRPSNEERESG
AVIKHLSFDWPLQETPVIGCSAARSCDVSEAAGVMSLVQDLKTDEKCLPRHDVTSQPSAL
TAPSPFTTPHLTSPAPPSVGLTPHPVSPGLPPTPSPSAPVLNLAPSPPSPTAFTPSPPSL
SPCPSFTCFPSRDSPVVPIEAPLEPKPSDTQCLSAEPQEKSSTETLKTPAGGRLVDACCL
SGPSGRLYVAAAGKWAACLWSRTETSDWTLIHTWTFRHPVINVFPVPDAAGLMFVTLGQL
EIREVRTLSCTSFMQMLLCEGVVQAAVGVYKSRVVTSSHSSAGSTLQVFDQSDHSRKPNA
HSLVSPGVRVGALAPVEGLSDALIGSDETARVFIWHLETGQLLRTLVLPDALMPSVCLRG
FSYRGVLFVLLQHQQLVTVEEEREKRAFFSVVAVNPLNRTSMVLTQLYPPTVWSGRLCEA
DVNSSSVVGLSQNGCVCVWELQRHRASRMVWAPEKEGWQLARWGGGGGDTLLTAHHSGDV
TLHYFSQI
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgttttactcggttatttcagcgaatcttacctacgtttttctaagtcgagtccagcga
tggctgagtgagtccgtgggaacgatggagagagacgtggaggagcagctgaagaccaca
ctgatgtacgacgataaggaaaagctccgtaggaagttggaaatcttacaaagagaatat
gtcaggacagctgaaaaactcaagcgtgctgagcgtttggaagcagtgcgtcaccatgtg
aagaacaggatcattcagcagaaccatcaggggcagagtgacaaggacgtgacgtccaag
ctgcaaatcagtcagtcaccactgaagctgaaccctggaagtgcagcagcagacaatggt
tcctgggacaatgataacaccagggggcgccatgttatcaggattctgctcccctctgat
tcttcttgccaacagtctccagatccttgtcatgatggtgaaggaggccagagatttagt
cctgctctgcgcctcaggtcccggcgcagtcgtctacgcttggaaaggagaagtactgag
gcgtccgtgaatccagacaaccacgaggaagcagaggagaaggggaaagagatggagagt
tttaaaatagagaaagaagtggaagaaatccaaagagccacggtggaagtcaagtatgaa
gaagaagaagggactgtgaatgaaactgaagacctgttctctggctccacctctctgaca
cattcacactgggaaacccatccatacactgcaaatattggagacaaggaagaggaggag
aagacgcctttagaatcctcagctttgccggtcaaatttgggaatcttactgaagacaca
gagcaaacgagtcgggtttgcactttaaaaagaaaaagaaagcaggaagaggaaagaaac
gatgttgaaatgaataaatgtcatgggccgccagtgtcttctgcagagaatcgtaacaat
aatgctgaacagaatgccacagttaaaaaggaaaataaaagctataatgagaacaatgtg
gtagtgaagaaaagacagagtgttggtttgttagactcgtgtacactagtggaggggtta
atttttcctgcagagtactatgttcgaactacaagacgtatgaccatgtcacagagtcag
cctgacatgcaggctgtcatactgtcacagctcaacatgggaaggcatcgcaggagccgt
ggtcgtggcagaggagcaaacaccagacggtggcagagtgatgtgtgttcaggtcagacc
gcatcctccccgctgaccacttcatctggtcacgaaccatcaaataacagtctggttgat
ggagcagcagaagtcactgttgaccatcagagctccagtcacatcactgagcggaaccag
tcgtcccctgggacctgcactcctgctgcgagaagaggcgggaggagaaaagggaccagg
gctagaagaagacgtcagactccagtgtccggtcgagacgaacagcccacccccccgctc
tcctcttcaccgtgtcctcctgatcctgtgacagatgctggtcagactgtgctccacctc
agcacacctacccagcatgcacctgcagtcactggagaccagagcggcccagcatctgga
caacaacagaatgtgtatcccatgtttgtgaggaggagtaacagggaaaagtcacagatg
agtcaaagtccatccagctgccagtctctcctcctgccttcttctcctcctgctcaaact
ccagttctcccactcccctcgctgacctccatctcagtgctgaaaaccctggtgtctctg
gagacccaccaggactttcatctcccagatgaccagtttgcatctctgaagctgcagaag
ctacaacaagtggtcacagaagcaggagtggaacatttctcatcacctttctgtaaaaca
cgcagtagcgtcagccgtggtctccccccctgcagcagcaatgacactgacctgtcgctc
cctctcacactcagcctcacacccacagttgcaaaatcacaaaaccgagctccgatgaac
ggaaaaagcttgaataaacagtcaaagcggtctttgagcgaagagccactcagcagccga
gatcagtgtgaaaatgtcaaatcacagcctgggtcagtggctgtgtcagtgattcagcca
tctgctgcaacagagcaaaccactgacaccaaccctgagactcaaccctcggagcgttca
gcagagagccctagaggtgaagtgaatgaccaggtgactggtcagtctacagactatgga
gtagaacagtcagcattagagagagatcacagaccttcaaatgaggaaagagagagtggc
gctgtcatcaaacatctttcttttgattggccactgcaggagacacctgttattggctgc
tctgctgcgaggtcatgtgacgtcagtgaagctgcaggagtgatgtcactggtccaagac
ttaaagacagatgagaagtgtttaccacgccatgatgtcacctctcagccctcagccctc
accgccccctcccccttcacaaccccacacctgacctccccagcaccaccttctgttgga
ctcacacctcaccctgtgtctccaggactcccaccgactccttctccctctgctccagtt
ctcaatttggctccgtctcccccctctccaaccgccttcaccccttctcccccatctctc
tctccctgtccgtcctttacgtgcttcccctccagggattctcccgtcgttccgatcgag
gcccccctagaaccaaagccttcagatactcagtgtctgagtgcagagccacaggagaag
agcagcacagaaacactaaagaccccagcaggaggccgtctggtcgacgcctgctgcctg
tctggaccctcagggcgcttgtatgtagcagcagcagggaagtgggccgcgtgcttgtgg
agtcggacggaaacatccgactggaccctaattcacacctggaccttcagacaccctgtg
atcaacgtgtttcctgtccctgatgctgcgggcctgatgttcgtcactttgggtcagctg
gaaatcagagaagtccggacgctgtcgtgcaccagcttcatgcagatgctgttatgtgaa
ggtgtagttcaggctgctgtgggggtctataaatccagagtggtaacatcctcccactcc
tcggccggctccaccctgcaggtgtttgaccaatcagaccacagcagaaaaccaaatgct
cacagtcttgtgtctcctggggtgcgtgtcggggccctggccccggtggaggggctttct
gacgctctgattggctcagatgagacggcacgtgtcttcatttggcacctggagaccggt
cagctgctgcggacgctcgtcctccctgatgctttgatgccttcagtctgtctgagagga
ttctcctacagaggagtgttgtttgtcctgctgcagcatcaacaactggtcaccgtggaa
gaggagagagagaaaagagccttcttctccgtggtcgccgtcaatcctctgaacagaaca
tctatggtgctgactcagctgtatccacccacggtctggtcaggcagactgtgcgaggcc
gacgtcaacagctccagcgtggtcggcctgagtcagaatggctgcgtgtgtgtgtgggaa
ctccaacgtcaccgtgcctccagaatggtgtgggctccagagaaggagggctggcagctg
gctcgctgggggggaggaggaggagacaccctgctgaccgctcatcacagcggagatgtg
acgttacactacttcagtcaaatatag
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integrated database retrieval system
