Cynoglossus semilaevis (tongue sole): 103383656
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Entry
103383656 CDS
T04866
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103383656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csem03041
]
103383656
03009 Ribosome biogenesis [BR:
csem03009
]
103383656
Enzymes [BR:
csem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103383656
Spliceosome [BR:
csem03041
]
Complex A
U2 snRNP components
U2 related factors
103383656
Complex B
103383656
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
103383656
Ribosome biogenesis [BR:
csem03009
]
Eukaryotic type
90S particles
Helicases
103383656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
Flavi_DEAD
SRP54
nSTAND3
DUF3915
AAA_29
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
103383656
NCBI-ProteinID:
XP_008315097
UniProt:
A0A3P8UY40
LinkDB
All DBs
Position
9:7267839..7275682
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AA seq
761 aa
AA seq
DB search
MSKRHRLDLGDDYSTSKKRSDGRDRDRDREREDRSRDRDRDRDRDRDRDRDLKPSSVPSN
STAAVSAALPTIKQMSVHQQVNPFTNLPHTPRYYEILKKRLQLPVWEYKENFSDIITRHQ
SFVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLG
QEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMG
VLKEVVRQRRDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEA
AIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPP
QQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVE
SLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQL
KKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKM
VIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAF
KQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRALC
TGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIK
PEWLVKIAPQYYEMSNFPQCEAKRQLERIVAKLESKEYSQY
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcggttggatttaggtgacgactactccaccagtaagaagaggtct
gatggaagggaccgtgatcgtgatagagaacgggaggaccgctcgagggacagggacaga
gaccgggacagagaccgggatcgtgacagagacttgaagccgtcgagtgtgccgtctaac
agcacggctgcagtttctgcagcattaccaaccatcaagcagatgtctgttcaccagcag
gtcaatcccttcaccaatctaccacacacaccacgttactatgagatcctgaagaagagg
ttacagctcccagtgtgggagtacaaggagaacttcagcgacatcataacgcgccaccag
agctttgtccttgttggagagaccggctctgggaagacaacacagatccctcagtggtgt
gtggacatggtgagaggtctgcctggccctaaacgtgctgtggcctgtactcagcccaga
agagtggcagccatgagtgtggctcaaagagtggcagatgaaatggacgtgatgcttgga
caggaagtcggttactccatccgatttgaggactgcagctccgcaaagactatactgaaa
tacatgacagatggtatgttactaagagaggctatgaacgaccccctgctggagcgatat
ggtgtgatcattctggatgaggcccacgagagaactctggccacagacattctgatgggt
gtcctcaaggaggtggtgcgtcaaagacgagatctaaaggttattgtcatgagcgccaca
cttgatgctgggaagttccaggtgtactttgacagctgccccctgttgaccattcctggg
cgcacacacccagtggagatcttttacaccccggagccagagcgtgattacctcgaggca
gcgattcgcaccgtcatccagattcacatgtgtgaggaagacgaaggtgactgccttctt
ttcctcactggtcaagaggaaattgacgaggcctgcaaacggatcaagagggaggttgac
gaccttggccctgaggttggagatataaaaatcattccactgtattctacgttgccgcca
cagcagcagcaaagaatatttgagccacctcctcccagaaagccaaatggtgcgatagga
aggaaggttgtagtgtcgacaaacatcgctgaaacgtctttaactattgacggtgtggtg
tttgtgattgatcctggatttgccaaacaaaaggtatacaatcctcgtatcagagtggag
tctttgcttgtcacagccatcagtaaagcgtcggctcagcagagggctggccgagctggc
agaacacgacccgggaaatgtttccgcctctacacagagaaagcttacaaaacagaaatg
caggataacacgtaccctgagatccttcgatccaacttgggttccgttgtcctgcagttg
aaaaagcttggtatcgatgacctggtgcacttcgacttcatggatccacctgctcctgaa
acactgatgagagccctcgagcttctgaattacctcgctgccctcaatgacgacggcgac
ctgacggagctgggctccatgatggcagagtttccactggaccctcagctggctaagatg
gttattgctagctgcgagttcaactgctctaacgagatcctttcaattactgccatgctg
tcagtcccacagtgttttgtccggcccacggaggctaagaaggcagcagacgagtccaag
atgaggtttgctcacattgacggagaccacttgaccctgctcaacgtctaccatgccttc
aaacaaaaccatgagtccaaccagtggtgctatgacaactttgtcaactaccgttcactg
atgtctgctgacaacgtgcggcagcaactgtccaggatcatggatcgttttaacctgccc
cgtcgcagcactgagttcaccagcagggattactacatcaacatccgccgggcactctgc
accggcttctttatgcaggtagctcatttggagcgcactggtcattacctcacagttaaa
gataaccaagtggtccaactgcacccatcgacagtattggaccacaagcctgaatgggtg
ctctacaatgaatttgtcctcaccactaagaactacatccgcacttgtacagacatcaag
ccagagtggctggtgaagattgctcctcagtactatgaaatgagcaacttcccgcaatgt
gaagctaagagacaactggagcgaatcgttgccaaactagagagcaaagaatattcccag
tactga
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