Cynoglossus semilaevis (tongue sole): 103383674
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Entry
103383674 CDS
T04866
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03030
DNA replication
csem03410
Base excision repair
csem03420
Nucleotide excision repair
csem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103383674 (rfc1)
03410 Base excision repair
103383674 (rfc1)
03420 Nucleotide excision repair
103383674 (rfc1)
03430 Mismatch repair
103383674 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csem03032
]
103383674 (rfc1)
03400 DNA repair and recombination proteins [BR:
csem03400
]
103383674 (rfc1)
DNA replication proteins [BR:
csem03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
103383674 (rfc1)
DNA repair and recombination proteins [BR:
csem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
103383674 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
RuvB_N
AAA_5
AAA_30
Rad17
AAA_33
AAA_14
AAA_17
BRCT_2
AAA_18
AAA_7
nSTAND3
AAA_16
RNA_helicase
TIP49
SKI
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
103383674
NCBI-ProteinID:
XP_008315120
LinkDB
All DBs
Position
9:7794465..7803819
Genome browser
AA seq
1149 aa
AA seq
DB search
MAKDIRRFFAPTAAKPAVQKPQNGNLKAEEKKKKKETKVKAEEKQHDGEKKRKKRAIIES
DSEEEPVRQSKKDKAKPSKRTPPSKQDPVHYVSETDSDSDSFPTLKKVSKAKQDSTSKHT
KTERHNSPPGAREVVKSPLQVKTALKSPPVPVQPKQTPTSVFDYFGSGTIQRSAKKLVAS
AKRKAPTQDKDDLISDEELARQLQMEEDAELEKQVHGDEEFARTLAMQDKEPQAKKARKG
FDEKQTPAAVPTESSTNSADGSKSSPSQRSHIKSEDIISPSPKKKNPSPAKASSRLAMMK
KRDEEKAMQPKSKNHIPLTKVSPKKEPLASPMKFTPKTGSSPTAVKTSPKKPKSISTSPD
DAEKKKVNASAYRNYLNRDGPQALGSKEIPQGAENCLEGCVFVLTGVLESMERDDAKSLI
ERYGGKVTGNVSKKTTYLVQGRDSGVSKLEKAESLGTQILDEDGLLDLIRTKPGKKSKYE
IAAEAQNKASKTRTPPSQVSKVTNRPQKISPSKGNSRSPHTPSPSKTAQIQGHSVKGGSS
STPPGRGSGHMARRELGLSSSSPSLSSSSCLPRGPSSPSVSGEDASLLWVDKYRPLSLKA
VLGQQGDQSCANKLLRWLKNWYKNNGSTTSKAPARFGKFGGGRDDGSGFKAALLSGPPGV
GKTTTAALVCQELGFSFVEMNASCTRSKNNLKEVVAESLNNTSIEGFYKGTSQTVSSKHI
LIMDEVDGMAGNEDRGGIQEMIGLIKSSKIPIICMCNDRNHPKIRSLANYCFDLRFQRPR
VEQIKGAMMSIAYKEGIKIPPPALNEIILASNQDVRQVIHNLSMWSARDKVMTYDQCKSD
AASARKDMKLGPFDVCRKVFALGEETAHMSFIDKSDLFFHDYSLAPLFVQENYLHVRPVA
ASGDPKAHLVLLSKTADSISDGDLVDRRIRSGQNWSLLPTQAIYASVLPGELMRGYMSQF
PTFPSWLGKNSSTNKHSRIVQELASHMSLKTFSSRQAVNLDYLHYLRQALLSPLQKHGTE
GAGQAVQLLDDYQLVKEDVDSIMEISVWGGQPDPYSKLDSKVKAAFTRAYNKEVHLTPYS
LQIVKKSRRGGGESELGGEDNGHEESEGEDNLKVDAMIKQKKIKTPKEPKEKKEESGKGK
GKGKGKTKK
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagacattaggcggttctttgcaccgactgcagccaaacctgcggtgcagaaa
ccccagaatggaaatttgaaagcagaggagaagaagaaaaagaaagagaccaaggtcaaa
gcggaggagaaacaacatgatggcgagaaaaagaggaagaagcgtgccatcatagagtca
gactctgaggaggaaccagtgaggcagtctaaaaaagacaaagccaagccgagcaaaaga
acaccaccttccaaacaggatcctgtgcattacgtctctgaaacagattctgacagtgac
agctttccaaccttgaagaaagtttcaaaagccaaacaggacagcacatccaaacacaca
aagacagagagacataattctccaccaggagccagagaagtcgtgaaatctccgctacag
gttaagactgcgctgaagtctccaccggtgcctgttcaacccaaacaaacccccacctca
gtgttcgactactttggcagtggcacgattcaacgctcagccaagaagctggttgccagt
gctaaaagaaaagctccaacacaggacaaagatgatctaatcagtgatgaagaacttgcc
aggcagctgcagatggaggaagatgccgagcttgaaaagcaggtccatggggatgaggag
tttgccagaacactcgccatgcaggacaaagagccacaggcaaagaaggcacggaaaggt
tttgatgagaaacaaactcctgcagcagttcctactgagagcagcacaaactctgctgac
ggcagcaagagcagcccatcacagagaagccacatcaaatcagaggacatcatcagcccg
tctccaaagaagaaaaacccttctccagctaaagctagctctagactggccatgatgaag
aaaagggatgaagaaaaggctatgcaaccgaaaagcaaaaatcacataccactcacaaaa
gtctcccccaagaaggagcctctggcttcacccatgaagttcacacccaaaacaggatcc
tcgcccactgcagttaaaacatctcccaagaaaccaaagagcatcagcacgagtcccgac
gatgcagagaagaagaaagtcaacgcttcagcttacagaaactaccttaacagagacggg
ccacaagctctgggctccaaggaaatcccacagggagcagagaactgtttggaaggctgt
gtgtttgtgctgacaggggtcctagagtccatggagagagatgatgccaaatctctcatc
gagcgatacggggggaaagttacaggcaacgtcagcaaaaaaaccacatacctggtgcag
ggcagggacagtggagtctcaaagctggagaaggctgagagtttgggaacacagatactg
gatgaggacggtctgctggacctgatcagaactaaaccaggcaagaagtccaagtatgaa
atagctgctgaggcccagaataaagcttcaaaaaccaggactcctcccagtcaagtgtca
aaggttacaaacagacctcagaagatctctccttccaagggtaattccaggtcccctcac
actcccagcccgtcaaagactgctcagatacagggtcacagtgtgaagggtggaagcagc
agcacgccacctgggagaggttcaggtcacatggcccgccgggagcttggcctctcctcc
tcctcgccctccttgtcttcctcttcttgtctacctcgaggccctagctctccatcagta
agtggagaagatgccagtctcctctgggtggacaagtaccgtccactctccttgaaggca
gtgcttggtcagcagggagatcagagctgtgccaataaactgctgcggtggctgaagaac
tggtacaaaaacaacggcagcaccacgtccaaagcaccagccaggtttggtaagtttgga
ggggggagggatgatggatcagggttcaaggcagctttgctctcaggaccccctggtgtg
ggaaagaccaccaccgcagccctggtctgtcaggaacttggtttcagcttcgtggagatg
aacgccagctgcactcgcagtaaaaacaatctgaaggaagtcgtggcagagtcgcttaac
aacaccagcatcgaaggcttctacaaaggcacctcgcagacagtaagcagtaaacacatc
ctgatcatggatgaggttgatgggatggctggtaatgaggaccgtggaggaatccaggag
atgattggcctgatcaaaagttcaaaaatccccatcatctgcatgtgcaatgatcgtaac
caccccaagatcaggtcactggcaaactactgctttgatttgagatttcagaggccgcga
gtggaacagatcaagggagccatgatgtccattgcttacaaagaaggcatcaaaatccca
cctccagctcttaatgaaatcatccttgcgtccaatcaggatgttcgacaggtgatccac
aacttgagcatgtggtcggccagagacaaggtgatgacgtacgaccagtgtaagtccgac
gctgccagcgctcgcaaggacatgaaactggggccattcgacgtgtgcaggaaggtgttt
gcattgggagaggagacggcgcacatgagcttcatcgacaagtccgacctcttcttccac
gactactcactagcgccactcttcgtccaggagaactacctgcacgttcgccctgtagct
gccagtggagaccccaaggcccacctggtgctgctcagcaagacggcagactccatctct
gatggagacctggtggacaggaggatacgctctggacagaactggtcgctgctgccaact
caggccatctatgccagtgtgctaccaggcgagctgatgaggggctacatgagtcagttt
cctacgtttcccagctggctcggcaaaaactcctccaccaataaacattctcgtatagtt
caggagctggcttcacacatgagcttgaagacatttagcagccgacaggcagtcaacctt
gactatctgcactacctgcggcaggcgctgttgagcccattgcagaaacatggaactgag
ggagccggacaggctgtgcagctgctggatgactaccagcttgtcaaggaggatgtggac
agcatcatggagatcagtgtctggggtggacagcctgacccctactccaaactggactct
aaggtcaaggcagctttcacccgagcctacaacaaagaagttcacttgacgccgtactcc
ctgcagatagtgaagaagagccgacgtggtggaggagagtcggagctaggaggagaagac
aacggacacgaggagtcagaaggtgaagacaaccttaaagtggacgctatgattaaacag
aagaagattaagactccaaaggagccaaaggagaaaaaggaagagtctgggaagggcaaa
ggaaagggcaaaggcaaaactaagaaatga
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