Cynoglossus semilaevis (tongue sole): 103384345
Help
Entry
103384345 CDS
T04866
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csem03036
]
103384345 (dicer1)
Chromosome and associated proteins [BR:
csem03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103384345 (dicer1)
microRNA pathway
RISC loading complex
103384345 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
CCDC22_CC
DSRM_2
Motif
Other DBs
NCBI-GeneID:
103384345
NCBI-ProteinID:
XP_008316059
LinkDB
All DBs
Position
1:20270529..20288622
Genome browser
AA seq
1913 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLVKELSYQIRGNYLGHAKRTVFLVNTASTAVQQAAAIRTHSDLEVGEYTDLGKA
TEWTDQHWGQEIINNQVLVMTCHVFLYILKKKILLLSKINLVVFDDCHLAITNHPYCEIM
KLFEGCSCSPRILGLTASILNGKCDPSELEQKILNLERILKSNAETATDLVVLDRYASQP
REVVLDCGVYTDKSGLSSQLQLELDEALHFLNDCNISVTREDRDPTFISKQILSDCQAVL
QVLGPWCADKAAGIMVRELQKYIKHEQEELGRKFLLFTDTTLRKVHALCEEHFSPASLDL
KFVTPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVESKDRP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPR
NKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADTERTQGFKEDLTTYKAIEKILRNKCSKSLEVSEFEVEQVMDDDNI
LPPYVLRSEDGSPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTMEMLDGFFQSTLYLP
INSPLRIPIKGPKMTCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEEMDLHD
EEETSVPGRPGSTKRRQCYAKAIPECLRDSYAVLGQTYYLYVIGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKPIPRIPYFPVYTRSGEVTISIELQKSGFTLTDTQLDLITRLH
QYIFSHILRLEKPALEFKPTLADSAYYVLPLNVVGDSNTLDMDFKFMENIEKSEARTGIP
TTHYTKQNPFSFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAKTATEAGVGTQSLPSDFR
YSNLDFGWKRSIDNKTFISCQEFCNEDDEGHCEQQEATAHDSSNLTQSCIDHSPVLEHGH
HVDPEPEDPHCTRHFTNGTTPVAHSDTSSQKDEHLHHQDNCQFSQPNEPVPQSSKSMQTT
TSVSARPSDILTKPSPSPTQPSDKCTPESTSLNTSKATSVCSQVAMGPSTATAPSSDLPS
GNKCRVLAENTSKSLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTY
PDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKGGSD
KQDSAANEELLTNGQCGTTYADDDDDDDDDEEEAEEMDEDSEVMLKAEPKEEVNIEDDLE
YYKEHIRFIDSMLLGSGAFAKKISLNAFPPSSTPGSGSSPAMDSPYDWKTPKKPHHPTTG
PYPSDTSFSGLSLEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGVELGKQSIS
YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPSEKGALTQMLMRN
CQNMAVDLCYGWLKIPPRCMLSHPDAERTLNHLISGFENFERKINYTFQNKAYLLQAFTH
ASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLA
VKYDYHKYFKAISPELFRVIDDFVQFQLEKDEMQGMDSELRRSEEDEEKEEDIEVPKAMG
DIFESLAGAIYMDSMMSLETVWQVYFPMMRPLIDKFSANVPRSPVRELLEMEPETAKFSP
AERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQNN
NT seq
5742 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtttacagctggtcacccctgctacttcacccatggggcctttctttggtctg
ccatggcagcaggaggccatccatgataacatttacacacctaggaaatatcaggtagaa
cttcttgaagcagctcttgaacataatactattgtctgcttgaacactggctcagggaag
acctttatcgcagtactcctagtaaaagagctctcctaccaaattcgaggaaattaccta
ggacatgcaaagaggactgtttttctggtaaacacagcttcaactgcagtgcagcaagca
gctgctattaggacccactctgacctggaggtgggagaatacacagatttggggaaagca
acagaatggactgaccaacactggggtcaagagattattaacaatcaggtgctggtcatg
acctgccatgtattcctgtacattttgaagaaaaaaatcttgcttttgtccaaaattaac
ctggtggtgtttgatgattgtcacctagccatcacaaaccatccttactgtgagataatg
aagctgtttgaaggctgctcgtgctctcctcgaatcctgggactcacggcgtctattcta
aatgggaaatgtgatccttcggaattggagcagaagatcctgaatctggagagaattctc
aaaagcaatgctgaaactgccacagaccttgtggttctggacaggtatgcctctcagcca
agagaagtcgtgctggattgtggcgtctacacagacaaaagtggactttcttcccaactg
cagctggagctggacgaagctcttcactttctgaacgactgcaacatctctgtcaccaga
gaagacagagatcctacgttcatctccaagcagatcctgagtgactgccaggctgtgctt
caagtcctggggccctggtgtgccgacaaggcagcaggcattatggtccgggagcttcag
aaatatataaaacatgaacaggaggaactcggtcgcaagttcctgctcttcacagacaca
actctgcgcaaagtgcatgctctctgtgaggagcacttctctcccgcctcactggacctc
aagtttgtcaccccgaaggttctgcggctgttggagatcctccatgaatacaagcccttt
gaacgacagcagtttgagagcgtcgagtggtacaacaaccgcaaccaggacaattacgtg
tcctggagtgactcggaggatgaagacgaagatgaagaggtggagtccaaagataggcct
gaagccaactttccctcaccgttcaccaatattttgtgtgggatcattttcgtggagagg
cgttacacggccgttgtcctcaatcgtcttattaaggaagctgggaagcaggatccagag
ttggcttacatcagcagcaacttcatcactggccacagcattggcaaaaaccagcctcgg
aacaaacagatggaggcggagtttaggaaacaagaggaggttctacgcaagtttcgagcc
catgaaaccaacctccttattgccaccagcattgtggaggaaggtgtggatatcccaaag
tgtaacctggtcgtgcggtttgacctgcccactgagtacaggtcctatgtccagtccaaa
ggcagagctcgtgcaccagtctccaactacataatgctggccgacacggagaggacccaa
ggctttaaagaagacctcacaacgtataaggccatagagaagattctaaggaacaaatgt
tcaaaatcactggaggtgagtgagtttgaggtggaacaggtgatggacgatgacaacatt
ctcccaccctacgtgcttcgttctgaggatggcagcccccgggtcactatcaacacagcc
attggacacatcaacagatactgtgctcggctgcccagcgacccattcacccacttggca
cccaaatgtagaactatggagatgctcgatggattcttccagtctacgctctacttaccc
atcaactcgcccctgcggattcctattaagggtcccaaaatgacctgtgccaggctcgca
gagaaagctgttgctcttttgtgctgcgaaaaactccacaaaataggtgagttggatgat
cacctgatgccggtgggaaaggagactgtcaaatatgaggaggagatggacctccacgat
gaggaagagacaagtgtccctggccgccctggttctaccaagaggagacaatgctatgct
aaagctattcctgagtgtctgcgggacagttatgctgttcttggccagacctactacctt
tatgtgattgggatggttcttaccactccactaccagatgaactcaacttccgcaggagg
aagctctacccaccagaggacaccacccggtgctttggcatcctgactgcgaaacccata
cctcgtatcccttatttcccagtgtacactcgctcgggtgaggtgacgatctccattgag
ctgcagaagtctggcttcaccctcactgatacccagcttgacctcatcacacgactgcac
caatacatcttttcccacattctgcgcctggagaaacctgcattggagttcaagcccaca
ctagctgactcggcttactatgttctacctctgaatgttgttggggactccaacaccctt
gatatggactttaagttcatggaaaacattgagaagtccgaggcccgaactggcattccc
accactcattacacaaagcagaaccccttcagcttcaagttagaggactaccaggatgct
gtgatcattccaaggtatcgtaatttcgaccagcctcaccgcttctatgtggcggatgtg
tacacagatctgacgccactcagcaagtttccatcaccagagtacgagacgtttgcagag
tactacaaaaccaagtacaatctggatttgtccaacctgaaccagcccctcttggacgta
gaccacacctcctcgagactcaatctgttgacccctcgtcacctgaaccagaagggcaaa
gctctaccactgagcagtgcagagaagaggaaggccaagtgggaaagtctgcagaacaaa
cagattcttgttccagagctgtgtgccattcaccccattcctgcctccctgtggagaaag
gcagtgtgtcttcccagcatcctctaccgcctccactgcctcctgaccgctgaggagctg
agggctaagacggcaacggaagcaggagtgggaactcagtcccttccatctgacttcagg
tattcaaacctggactttggctggaagagatcgattgacaacaaaacgttcatctcctgc
caagagttttgtaacgaggatgatgagggtcactgtgaacaacaagaggctacagcccat
gactccagtaacctcacgcaatcatgtattgaccactctcctgtgcttgagcacggacac
catgttgaccctgagcctgaagaccctcactgcaccaggcattttactaacggcactacc
cctgtagcacactctgacaccagcagtcagaaagacgagcaccttcatcaccaagacaat
tgccaattttcccagcccaacgagcctgtgccgcagagctccaaatcaatgcaaaccact
acctcagtttctgcacggccctcggacatcttgacgaagcccagccccagccccacacag
cctagtgacaaatgtacacctgaaagcacctcactcaacacaagtaaagctacctcagtc
tgcagccaggttgctatgggtcccagcacagccacagcaccttcatctgacctaccctct
ggcaacaagtgcagagtcctggcagaaaacacctccaaaagtctgggacccaaccccggc
ctcattctgcaggccttgactctttcgaatgcaagcgatggcttcaatttggagcggctg
gagatgcttggcgactccttccttaagcatgccataacgacatacctgttctgtacctac
cctgatgcccatgagggacgactcagctacatgcgcagcaaaaaggtgagcaactgtaac
ctatatcgccttgggaagaagaaaggccttcccagcaggatggtggtgtccatttttgat
cctccggtcaactggctccctcctggttatgtggtgaaccaggacaaaggtggctctgac
aaacaggactcggcggccaatgaagaacttctgaccaatgggcagtgtgggaccacctat
gctgacgacgacgatgatgatgatgatgatgaggaggaggctgaggagatggatgaagac
agtgaggttatgctcaaggctgagccaaaggaagaagtgaacattgaagatgatttggaa
tactacaaagaacacattaggttcattgatagcatgttgttgggatcgggtgcatttgcc
aagaagatctctctaaatgctttccctccctcctcgacaccgggctctggttcctcacct
gctatggattctccatacgattggaagacccccaaaaagcctcaccatcccaccacaggc
ccctacccctcagacacatccttcagcggactgtctttagaggagtttgactacagctca
tgggatgccatgtgctacctggaccccagcaaagctggagaagaggatgactttgtggtg
ggcttttggaacccgtcggaggaaaactgtggtgttgagctgggtaagcagtcaatctcg
tacgacctgcacacggagcagtgcatcgctgataaaagcatcgctgactgtgtggaagct
ctgctcggatgctatctcaccagctgtggagagagggccgcacagatgttcctctgctcc
cttggcctcaaggtgttaccatcggagaagggggctctaacacaaatgctgatgcggaac
tgtcagaatatggctgtagacctgtgctacggctggttaaagattccaccgcgttgcatg
ttgagccatccagatgccgagcgaaccctgaatcacctcatctctggctttgagaacttt
gaaagaaagatcaactacacctttcagaacaaggcatacctcctgcaagccttcacccac
gcttcctaccattacaacactatcactgattgttaccagcgtctggagttccttggtgat
gcaattctagactacctcataacaaagcacctttatgaagacccaaggcagcactctccc
ggcgtgttgaccgacctgcgctctgcgctcgtgaataacaccatctttgcatctctggct
gtaaagtatgattaccacaagtacttcaaggccatttcgcccgagcttttccgcgtcatt
gatgactttgtgcagtttcagctggaaaaggatgagatgcaaggcatggattcagagcta
agacgctctgaggaagacgaggagaaggaggaggacatcgaagtccccaaagccatgggt
gatatctttgagtcattagctggagccatttacatggacagcatgatgtcactggagacg
gtgtggcaagtttattttccgatgatgaggcctcttattgataaattctctgccaatgtg
ccgcgctctcctgtgagggagctccttgagatggagccagaaactgccaaattcagccct
gcagaaagaacgtatgatggaaaggtgcgagtgacagtggaggtcgttgggaaagggaag
ttcaaaggtgttggtcgcagctaccggattgccaagtcggcagcggcacggcgagctctg
cgcagccttaaagccaatcaacctcaggtccaaaacaattga
DBGET
integrated database retrieval system