Cynoglossus semilaevis (tongue sole): 103384434
Help
Entry
103384434 CDS
T04866
Symbol
prpf6
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103384434 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csem03041
]
103384434 (prpf6)
Spliceosome [BR:
csem03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
103384434 (prpf6)
Complex C
U5 SnRNP specific factors
103384434 (prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
TPR_2
TPR_17
TPR_8
TPR_1
TPR_CcmH_CycH
ARM_TT21_C
TPR_9
FAT
TPR_21
ARM_TT21_5th
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
103384434
NCBI-ProteinID:
XP_016891794
LinkDB
All DBs
Position
10:1161320..1173381
Genome browser
AA seq
935 aa
AA seq
DB search
MASSGAKQPSKMNSKSSGPAAAGVNNGTPVMPLASPLMGKKKKPFLGMPAPLGYVPGLGR
GATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQDDDDEDLNDTNYDEFNGYA
GSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFSDL
KRKLGEVSEEEWLSIPEVGDGRNKRQRNPRYEKLTPVPDSFFSKHLQSGENKTSVNPLEG
LAGLNTPYPGSMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYL
TDLNSMIPTYGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMK
GTEMCPKSEDVWLGAARLQPGDPTSTLRKALENVSKSVRLWKTAVELEEPEDARIMLSRA
VECCPTSVELWLALARLETYENARRVLNKARENIPTDRHIWITAAKLEEANGNTQMVDKI
IDRAIASLNANGVEINREQWIQDAEECDKAGSVATCQAVIRAVLGIGIEEEDRKHTWMED
AESCVAHGAFECARAIYAHALQMFPSKKSVWLRAAYFEKSHGTRESLEALLQRAVAHCPK
AEVLWLMGAKSKWQAEDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLA
KARSSAPTARVFMKSVKLEWVLGNIDDAQDLCTEALKHYEDFPKLWMMRGQIEVQCENMD
KAREAYNQGLKKCPHSVPLWLLLSRLEEKVGQLTRARAILEKARLKNPQSPELWSESVRL
EFRAGLKNIANTLMAKALQECPNSGILWAQAVFLEARPQRKTKSVDALKKCEHDPHVLLA
VAKLFWSERKITKAREWFLRTVKIDPDLGDSWAMFYKFELQHGTEEQQAEVLKRCDNAEP
RHGELWCAESKHILNWQKKTGEILELVASKIKNAF
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcaagctcaggagctaaacaaccatctaaaatgaattccaaatcctccgggcccgcg
gccgctggagtaaacaacgggactccggtaatgcccctggcctctccgcttatgggtaaa
aagaagaaaccctttctgggtatgccggctccgcttggctacgtccccggtctgggtaga
ggtgctactggttttaccacccggtctgatattggtcctgctcgtgatgccaatgatccc
gtggatgaccgccatgcacccccgggaaagaggactgttggggatcagatgaaaaagaac
caggatgacgatgatgaagatctgaatgacaccaattatgatgagtttaatggatacgcg
ggcagcttgttttccagtggtccctatgaaaaggacgatgaagaagccgatgccatatat
gcagcactggacaagaggatggatgaaaggcgcaaagaaagaagggagctgagagaaaag
gaagaaattgaaaagtatcgtatggagcgtcccaaaatacagcagcagttttcagatctt
aagagaaagttgggagaagtgtcagaagaggagtggctaagcatccccgaggtgggcgat
ggaagaaacaagcgtcagagaaatcctcgctatgagaaactcacccctgtcccggacagc
tttttctccaaacacctgcagagtggggaaaataaaacctcggtgaaccctctcgaaggg
ctggcaggtctgaacacaccttacccaggaagtatgacccccggtctgatgacaccaggg
acaggtgaactggacatgagaaaaatcggccaggccaggaacacgctcatggatatgcgg
ctcagccaggtttctgattctgtgagcggccagacggtggttgatccgaaaggatacttg
acagatcttaactccatgatcccaacatatggaggggacatcagtgatatcaaaaaggct
cgtcttctgctgaaatcagtgagggagacaaatcctcatcatccccctgcctggattgca
tcggccaggttggaggaagtgaccggcaagctccaggtggcaagaaacctgataatgaaa
gggactgaaatgtgtccaaagagtgaggacgtgtggctgggggccgccagactacaacct
ggggaccccacaagtacgctaaggaaagccctggaaaatgtgtccaagtctgttcggctt
tggaagactgctgtcgagctcgaagaacccgaggatgccaggatcatgctcagtcgcgcg
gtggagtgttgtcctacaagtgtggagctctggctggcgctggcccgattagagacgtac
gagaatgctcgtcgcgtcctcaacaaagctcgagagaacatccccaccgatcggcacatc
tggataaccgctgccaagttggaggaagccaacggtaacacacagatggtggacaagatc
atagacagagccatcgcgtctttaaacgccaacggtgtggagatcaacagagagcagtgg
atacaggacgccgaggagtgtgacaaagcaggcagtgtcgctacatgccaggctgtgatc
cgggctgtcttaggaattggtattgaggaggaggatcggaaacacacctggatggaggat
gcagaaagttgtgtggcccacggagcctttgagtgtgccagagccatttacgcacacgct
ctccaaatgtttcccagcaaaaaaagcgtttggctcagagctgcgtattttgagaagagc
cacggcaccagggagtctttagaggccctcctccagagagccgtggcccactgtcccaaa
gcagaggttctgtggctgatgggggccaagtccaagtggcaggctgaagatgtgccagca
gccagaagtattctcgctctggcctttcaggcaaatcccaacagtgaagagatctggctt
gctgctgtaaaactcgagtctgagaataatgagtatgaaagagcccgtcgacttctggcg
aaggccaggagcagtgccccgacagccagggtgtttatgaaatctgtaaagttggaatgg
gtgttgggaaacatagacgacgcccaggatttgtgcacagaggcactgaaacactatgag
gacttccccaaactgtggatgatgagagggcagattgaagtgcagtgtgaaaacatggac
aaggccagagaggcctacaaccaagggttgaagaagtgtccccactcagtccccctgtgg
ttgttgctgtctcgtctcgaagagaaagtcgggcagctgactcgagccagggccatcctc
gagaaggcaaggctgaagaaccctcaaagcccagagttatggtcggagtctgtcagactt
gagttcagggccggactgaagaacatcgcgaacactctgatggccaaagccctgcaggag
tgtccaaattcaggaattctgtgggcacaagctgtgtttctggaggcaagaccacaaagg
aagacaaagagtgtagatgctctgaagaagtgtgaacatgatccccacgtcttgcttgct
gtagccaagttgttttggagtgaacgaaaaatcaccaaagccagagagtggttcctcagg
actgtgaagattgaccccgacctgggagactcttgggcgatgttttacaagtttgagctg
cagcacggcacagaggagcaacaggcagaggtattgaaacgctgtgacaatgcagaacca
cgtcacggagagctctggtgcgccgagtccaaacacatcctcaactggcaaaagaagact
ggggagatactggaactcgtcgccagcaaaatcaaaaacgcattctga
DBGET
integrated database retrieval system
