Cynoglossus semilaevis (tongue sole): 103385584
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Entry
103385584 CDS
T04866
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04510
Focal adhesion
csem04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103385584
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103385584
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
csem00536
]
103385584
Glycosaminoglycan binding proteins [BR:
csem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103385584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Frataxin_Cyay
Amnionless
Motif
Other DBs
NCBI-GeneID:
103385584
NCBI-ProteinID:
XP_008317733
LinkDB
All DBs
Position
10:20448237..20464972
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AA seq
1487 aa
AA seq
DB search
MFSFVDSRTLLLLVASQLVLLAVVRCQEEDDQEAGGCIQDGQLYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIRECANPVIPSGECCPICPADASAPTETIGAKGQKGEPGDIADVVG
PRGPPGPMGPSGDQGPRGEAGAKGDKGNLGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGEAGEPGAAGPMG
PRGPAGPSGKWGSDGESGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGESGNAGENGSAGPMGPRGLPGERGRPGASGAAGARGNDGLPGPSGPPGPVG
PAGAPGFPGSPGAKGEAGPTGARGAEGAQGPRGEGGTPGSPGPAGASGNPGTDGIPGAKG
SAGASGIAGAPGFPGPRGPPGPQGATGSLGPKGQSGDPGLPGFKGEAGPKGELGVAGPQG
PPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVAGAAG
PKGASGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPAGASGEDGRPGPPGPLGARGQPG
VMGFPGPKGANGEPGKPGEKGLVGRTGLRGLPGKDGETGSSGPPGPSGPAGERGEQGQPG
PSGFQGLPGPTGPPGENGKPGDQGVSGEGGAPGAVGPRGERGFPGERGGAGAQGLQGPRG
LPGTSGSDGSKGAIGPAGAAGPQGPPGLQGMPGERGAAGITGAKGDRGDNGQKGPEGAPG
KDGARGLTGPIGPPGPSGPNGAKGETGPGGPSGAPGVRGAPGDRGEIGPPGPAVFAGPPG
ADGQPGAKGETGEGGQKGEAGSSGPQGPSGAPGPVGPTGVTGAKGARGAQGAPGATGFPG
AAGRVGSPGPNGNPGPAGPAGPAGKDGPKGVRGDAGPPGRHGDAGLRGAPGAQGEKGEPG
EDGPPGADGPLGPQGLSGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGSSGDRGPPG
PVGPPGLTGPAGETGREGTPGSDGPPGRDGAVGVKGERGNTGPAGAPGAPGAPGSPGSVG
PLGKQGDRGESGAQGPAGPPGAAGARGIAGPQGPRGDKGEAGEAGERGQKGHRGFTGLQG
LPGPPGSPGDAGSAGPAGPSGAKGPAGPSGPAGKDGSNGQPGPIGPPGPRGRSGESGPAG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDASLK
SLNNQIENLRSPDGTQKNPARTCNDLKLCHPEWKSGFYWVDPNLGSIADAMKVFCDMETG
ETCVHPSIAKVPKKNWWTSKSKDRKHIWFGETMNGGFHFSYAQEGPAAVAANVQLTFLRL
LSTEASQNLTYHCKNSIAYMDQSAGNLKKALLLQGHNDVEIRPEGNSRFTYSVLEDGCKK
HTDRWGKTVFEYRTQKTSRLPIVDIAPMDIGGANQEFGLDLGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactcttctgctactcgtagcatcccaacttgtttta
ctagccgtggtcagatgtcaggaagaagacgaccaggaggcaggtggctgcatacaggac
ggccagctgtataatgataaggatgtgtggaagcccgagccgtgtcgtatctgtgtgtgc
gacagcggagcggttctgtgtgatgagataatctgcgaggagatcagagagtgtgccaac
ccggtcatcccatctggagagtgctgtcccatctgccctgctgatgccagcgcccccact
gagacgatcggtgctaagggccagaaaggtgaacctggagatatcgcagatgttgtagga
ccaagaggaccaccgggccccatgggcccctctggtgatcagggcccacgtggagaagcc
ggtgctaaaggtgacaagggaaatcttggacctcgaggaagagatggcgagcctggcacc
cctggaaaccccggaccacctggacctcccggaccaccaggacttggagggaactttgct
gctcagatggcaggaggttttgatgagaagtctggaggagctcagatgggagtgatgcag
ggaccaatgggacccatgggacctcgtggcccacccggaccttctggagctcctggtccc
cagggtttccaaggtgctccaggagaggctggagagcccggtgcagccggaccaatggga
ccacgtggaccagctggaccttctggaaaatggggaagtgatggtgagtctggcaaacct
ggcaaggctggagagcgtggacctgcaggacctcagggagctcgtggattccctggaact
cctggacttcctggaatcaaaggacacagaggtcatcctggtctggatggagccaaggga
gagaccggtgctgcaggagccaagggagaatccggaaatgctggtgagaacggatctgct
ggaccaatgggcccacgtggtctgcctggtgagagaggacgtcctggggcatctggagct
gcaggagctcgtggaaatgatggtctgcccggtccttctggtccacctggacctgttggt
cctgctggagcacccggtttcccaggatcccctggagccaagggagaggccggtcctact
ggtgcccgtggagcagagggcgctcagggacctcgtggagagggtggtacaccaggatct
ccaggacctgctggtgcatcgggtaaccctggtaccgatggtattcctggagctaaagga
tctgctggtgcttcaggtatcgctggtgctcctggattccccggccctcgtggcccacct
ggaccacagggagccactggatctcttgggcctaagggacagtctggagaccctggtctt
cctggattcaaaggtgaagctggacctaagggagaactgggcgttgctggtcctcaaggc
cccccaggccccgcaggtgaggaaggaaagagaggagccagaggagaacctggagctgcc
ggtccactgggaccaccaggagagagaggagctcctggtaaccgtggtttccctggtcag
gatggtctcgctggtgctaagggggctcctggtgaccgtggtgtcgctggtgctgctggg
cctaaaggtgcttctggagacccaggtcgcactggagaatccggtctccccggagcaaga
ggtctcactggtcgacccggagatgctggtcctcagggcaaagttggacctgctggtgcc
tctggtgaggatggtcgccccggcccccccggtcctctgggagctcgtggtcagccagga
gtgatgggattccctggaccaaagggagcaaatggtgaacctggaaaaccaggagagaag
ggtctcgtgggtcgtactggactgagaggtctgcctggaaaagatggtgagaccggatct
tctggacctcctggaccttctggacctgctggagagagaggagaacaaggacagcctggt
ccttctggcttccagggcctgcctggaccaactggccccccgggagaaaatggaaaacct
ggagaccagggtgtttctggagagggcggagctcctggtgctgttggaccaagaggtgaa
cgtggtttccctggtgagaggggcggtgccggtgctcagggtcttcagggaccccgtggt
ctcccaggaacatctggaagtgatggatccaagggagccattggaccagctggtgctgct
ggacctcagggtccaccgggcctgcaaggaatgccaggagagagaggagctgctggaatc
acaggagccaaaggagacagaggtgataatggacaaaagggacctgagggtgctccagga
aaagatggcgctagaggtttgactggtcccatcggtcctcctggaccatctggacccaac
ggagccaagggagagactggacctggtggaccaagtggtgcccctggtgtccgcggtgct
cctggtgaccgtggtgaaatcggacctcctggacctgctgttttcgctggaccccctggg
gcagatggtcagcccggtgccaaaggagaaactggtgaaggtggacagaagggagaggct
ggttcttctggacctcagggaccatctggagctcctggacctgtgggaccaactggcgtg
acaggagctaaaggagcccgtggagctcagggagcacctggtgccaccggattccccggt
gctgctggcagagttggatcacctggtccaaacggaaatcccggtcctgctggtcctgcc
ggacctgctggcaaagacggaccaaagggagttcgtggtgatgctggacctccagggaga
catggagatgctggacttcgtggcgcacctggtgcacaaggcgagaagggagagcctgga
gaggatggaccacctggagctgatggacctttaggtcctcagggtctgtctggatcccgt
ggtattgtaggtctgcccggacaacgtggagagagaggtttccctggtcttcctggacct
tctggggagcctggtaaacagggaggtcctggttcttctggtgaccgtggaccccctgga
cctgttggaccacctggacttacaggacctgctggagaaactggaagagagggaactcct
gggtcagatggacctccaggtcgtgatggagctgttggtgtaaagggagaacgtggtaat
actggtcctgccggtgcccctggagctcctggtgcccctggttcccccggatcagtcgga
cccctcggcaagcagggagacagaggagagtctggcgctcaaggacctgctggacctcct
ggagctgcaggagccaggggtatcgctggaccccaaggaccacgtggagataagggtgaa
gccggtgaggctggagagcgaggacagaagggtcaccgtggattcactggtctccagggt
cttcctggacctcctggttcacctggagatgctggatctgctggacctgcaggacccagc
ggtgctaagggacctgctggaccaagtggaccggccggtaaagatggatctaacggacag
cccggccctattggacctccaggtcctcgtggacgctctggagaatcaggtcccgctgga
ccccctggtaatgctggaccccccggtcctcctggtcctcccggcccgggcatcgacatg
tcagcctttgccggtctgggtcagaccgagaagtcccctgatcctctcaggtacatgagg
gccgacgaggcctccagctctctgaggcagcatgacgttgaggtggacgccagtctcaag
tccctgaacaatcagatcgagaacctgcgcagccccgacggcacccagaagaaccctgca
cgcacctgcaacgacctgaaactgtgccaccccgagtggaagagtggcttctactgggtc
gaccccaacctgggctccatcgctgacgccatgaaggttttctgcgacatggagacagga
gagacttgtgtccacccgagcatcgccaaggtgcccaagaagaactggtggaccagcaag
agcaaggaccgcaaacacatctggttcggagagaccatgaacggaggattccacttcagc
tacgctcaggagggccccgccgctgttgcagccaacgtccagctgaccttcttgaggctt
ctttccactgaggcctcccagaacctcacataccactgcaagaacagcatcgcctacatg
gaccagagcgcgggcaacctgaagaaggccttgctgctgcagggacacaacgacgtggag
atccgcccggagggaaacagtcgcttcacatacagtgtgttggaggatggatgcaagaaa
cacacagaccgatggggcaagactgtctttgagtacagaacacagaagacctctcgtctg
ccaatcgtagacatcgctcctatggacatcggaggagcaaatcaggagttcggattggat
ctaggcccagtctgcttcttgtaa
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