Cynoglossus semilaevis (tongue sole): 103386168
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Entry
103386168 CDS
T04866
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04382
Cornified envelope formation
csem04510
Focal adhesion
csem04512
ECM-receptor interaction
csem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103386168 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103386168 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
103386168 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103386168 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csem04147
]
103386168 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
csem00536
]
103386168 (col4a6)
Exosome [BR:
csem04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103386168 (col4a6)
Glycosaminoglycan binding proteins [BR:
csem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103386168 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103386168
NCBI-ProteinID:
XP_008318537
LinkDB
All DBs
Position
1:23739936..23827187
Genome browser
AA seq
1709 aa
AA seq
DB search
MRVLVCAVAVAVLLLGPVHAGTDLNEPCAGEDCSRGCKCRPEKGSRGRPGLLGEVGPSGA
EGPRGSTGPHGPKGEKGHVGLKGPSGPKGDKGPMGVPGFQGTDGVPGHPGQPGGRGPAGL
DGCNGTRGEPGDPGFGIGPPGFPGAAGPIGPKGQKGEPRYISGSNIIGYPGVPGTDGYPG
IRGPDGPIGQPGPRGPEGYPGPSGPPGPPGPMGSSSDGYLGEKGDKGDVGLPGPSGTPGD
GSLTSEQTLTIYKGDKGEPGPKGVRGLAGNPGAPGPFGYRGEYGEKGIPGYPGARGFPGF
NGPPGALGSQGLVGNPGFPGQPGYIGPKGDQGDPGPPGPPTYVNELGTSVQGQQGDPGLS
GLPGTPGDQGYPGLPGPPGVPGSVLDPSGRGGSPGLPGLPGPKGEKGNQGGTSYGAEGSP
GSPGLPGPIGPPGLPGPSSTSEPCVIIPALPKGSITSSSGEPGLPGPRGPPGNKGYNGYR
GDPGDCACLGGGVSGQTGIVGPPGVDGNPGYPGSKGERGDTGTPGFNGPQGPAGRHGNPG
AFGRKGEKGAPYYPHLGLTVKGERGNPGLRGPNGETGKPGRDGLPGFPGSPGAPGDAGYG
TQGEKGFPGFPGPKGRSGGPGEPGPGYSGTPGFRGEPGEPGIPGLPGTPGLPGPKGENSC
AGLNDGAEGTGQVLPCIIPGEIGDPGFPGIPGRPGPKGRPGVPGDSGGPGYDGAKGERGE
PGFGGQPGPQGFPGPRGDPGVPGIPGQGYDGGRGKDGIPGRPGAKGQPGEVLGATPGSPG
GNGFPGIQGDKGQPGTPGGPGSPGFDGRSGVPGLKGERGVDGLPGFPGLPGLPGDPNGGI
PGQPGAPGAKGRSGSSGCPGSPGQKGKRGDPGFPGPAGMKGTPGLPGTPGSHGQRGPPGR
PGPGTRDGIPGIPGIKGERGFPGLTGFPGISGRPGSPGFPGGKGLPGEPGRGGYSGGPGY
PGQKGDRGVPGPPGSSPSVPHSILGDKGESGIPGGSGLPGFPGPRGDKGLPGLPGHPGLP
GLPGLAEQSKGQRGDPGIPGQPGAPGYPGPKGEAGIMGFPGMSGARGNDGTPGFPGNPGE
PGRPGGKGLPGDSYGYPGGPGAKGLQGDSGIPGGRGYDGGPGDNGYSGSPGLRGTKGTPG
EPGRPGITGSSGFPGPKGQNGYPGRRGADGSPGVPGGPGGSGAKGLPGSPGLDGLNGLAG
PKGLPGTPGGSLGGRPGANGIPGLKGERGYSYPGIPGIPGGKGEPGDQGGPGLPGFPGRP
GPPGESVGSNIPGPTGNPGLPGLDGEYGFRGPPGPPGPPGPGTAQGDRGDPGLPGFPGAP
GRKGESGLPGGPGSSGLFGSKGERGEPGYSGGPGQKGFSGDQGYYGNKGPKGLRGPPGRK
GLPGVLVPGDRLTRPHFGDVGFPGALGRPGSPGEPGQSGTPGQPGPKGRFGSVGKLGRSG
PPGPGGFIGDAGPPGFPGPPGEQGLPGASGRPGIPGGVGRSSSVGYTLVKHSQNSQIPMC
PQGMAKLWDGFSLLYVEGQEKAHNQDLGQPGSCLPRFSTVPFLYCSPNNICYYASRNDKS
YWLSTTAPIPMMPVADDQIRPYISRCSVCEAPSHAVAVHSQDTNIPTCPPGWRSLWIGYS
FLMHTAAGSEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVDPAQE
FLYSPIQETLKGGQERFKVSRCQVCSKLL
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgagagtccttgtgtgtgcggtggctgtggcggttctgctgctcggacctgttcacgca
ggcacagatttgaatgagccgtgcgctggtgaggactgcagtcgaggatgtaagtgccgc
ccagagaagggcagcaggggccgtcctggacttctgggtgaagttggtccaagtggagct
gaggggccccgtggcagcacaggccctcatggacctaaaggagagaagggacacgttgga
ctgaagggaccatctggtcccaaaggagacaaaggaccgatgggagttcctgggttccaa
ggaaccgacggagtgccaggtcatccaggtcagcctggaggtcgaggtccagctggactg
gacggctgtaatggtaccagaggagaacctggagatccaggatttggtattggaccaccg
gggttccctggagcagctgggccgattgggccaaagggccagaagggggagccacgatac
atttctggcagcaacatcataggttatcctggtgttccaggaacggacgggtaccccggt
atcagaggtccagacggtcctattggtcagcctggtccaagaggacctgagggataccct
ggtccatctggtcctcccggccccccaggaccaatggggagttccagtgacggatatctg
ggagagaaaggagacaagggcgatgttggacttcctggaccaagtggaacccccggggac
gggtcactgacaagtgaacaaacactgactatctacaaaggagacaagggggaacctggt
cccaaaggagtccgaggactagcggggaatccaggagcacctggaccttttggatatcgt
ggtgaatatggggagaaggggattcctggatatcctggtgccagaggtttcccaggattc
aacggcccgcccggcgctctaggaagtcaggggctcgtagggaatcctggtttccctggt
cagccgggatacatcggaccaaagggagaccagggagacccgggaccaccaggaccgccc
acctatgttaatgagcttggcacctctgtccaaggacaacaaggtgatccaggtctcagt
ggtcttcctgggacaccaggagaccaggggtatcccggtctaccaggacctccaggtgta
ccaggatcggttttggatccctcaggtcgtggtggttctccagggcttcctggacttcca
ggtccaaagggagagaagggaaaccagggaggaacatcatatggtgctgaaggatctcct
ggatcccctggactgcctggacccatcggacctcctggactgccaggaccttcaagcacg
agtgaaccctgcgtcatcatccctgccttgcccaaaggcagcatcactagctcttccgga
gaacctggtttaccaggacctagaggaccaccaggaaacaaaggatacaatggttacaga
ggggaccctggtgactgtgcctgcctggggggtggagtctcaggacagactggtatagtc
ggaccccctggagttgacgggaatcctggttatccaggatcgaagggagagcgtggtgat
acagggaccccgggattcaacggcccccagggtccagcgggtcgtcatggtaacccaggt
gcgtttggacgtaaaggagagaagggggctccatactacccccacctgggtctgacagtg
aagggcgagcgtggaaatccaggactcaggggacccaacggtgaaacaggaaaaccaggc
agagatggacttcctggattcccaggatcccccggggctccaggtgatgctggatatggc
acacagggagagaagggattcccagggtttccgggtcctaagggtcgttctggtggtcct
ggcgagcctggacctggttacagtggaaccccaggtttccgtggagaaccaggagagcct
ggtattcctggattaccaggaacgccgggtttgccgggtcccaaaggtgaaaacagctgt
gcagggcttaatgacggcgcagagggaacgggccaagtgctaccgtgcatcatcccgggt
gagattggagaccctggcttccctggaatacctggaagaccaggacccaaaggtcgtcca
ggtgttcctggagattcaggaggtccaggatatgacggagccaagggagagagaggagaa
cctggatttggaggtcaaccaggaccacaaggttttcctggacccagaggagatcctgga
gttccaggtatcccaggacagggctatgatggaggcagaggtaaggatggtatccctgga
cgtcctggagctaaaggccaacctggagaggtactgggagcgacacccggctccccagga
ggcaacggctttcctggaattcagggagacaaaggacagcctggaacaccaggaggacct
ggatcacctggttttgacgggcgctcaggtgttcctgggttaaaaggagagcggggagtt
gatggacttcctggttttcctggacttcctggacttccgggtgacccaaatgggggtatc
cctggtcagcctggagctcctggagcaaagggacggagcggatcgtcaggctgtccaggc
tctcccggacaaaaaggtaaaagaggagatccaggattcccaggacctgccggcatgaag
ggaacccctggactgccaggaactcctggatcccatggacaaaggggtccccctgggcgt
ccaggaccaggaacaagagatggaataccaggaataccaggaatcaagggtgagagaggt
ttcccaggtctaacgggattccccggaatctcgggccgacctggcagtccaggctttcca
ggaggaaaaggacttcctggtgaacctggaaggggtggatattctggtggacctggatat
cctggacagaaaggcgacagaggagttcctggacctccaggttcatctccaagtgttcct
cactcaatcttgggagataagggagaatcaggaatccctggaggcagtggccttccaggc
tttccaggtcctcgaggggacaaaggtctaccaggtctccctggtcacccaggtctacct
ggacttcctggtttagcagagcagagcaaaggacagaggggagatcctggaattccagga
cagccaggagctccaggctaccctggacctaagggagaagctggaattatgggattccct
ggcatgtcaggcgcacggggtaatgacggcacacctggttttcctggtaatcctggagag
cctggaagacctggtgggaaaggtttacctggagactcttatggttatcccggtggtcct
ggtgctaaaggtctccagggagattccggtattccaggtggtcgaggttacgatggtggc
cctggagacaatggctattcaggaagtccgggacttcgtggcacaaaaggaacacctggt
gaacctggaagacctggaataacaggttcctctggtttccctggaccaaagggacagaat
ggatacccaggtagaagaggagcagatgggtctcctggtgtaccaggtggtcctggagga
tctggagctaaaggtttgcctggatctcctggtttggatgggctcaatggtcttgctgga
cctaaaggtctccctggaactccaggtgggagtcttggaggtcgtccaggtgccaatggt
attcctgggctgaagggagagaggggatactcctacccaggaatacctggaatccccgga
ggcaagggagagccgggagaccaaggtggtcctggacttccaggattccctggtaggcct
ggacctcctggtgagtctgtggggtccaatattcctggacctacaggaaatcctggtctt
cctggattggacggagaatatggttttcgtggtccaccaggaccaccaggaccacctggt
ccaggtacagcacagggagacagaggtgatcctgggcttccaggcttccctggagctcct
ggtaggaaaggtgaatcgggactccctggaggtccggggtcttctggtctttttggtagc
aaaggagaacgtggtgagcctggttacagtggtggtccgggtcagaaaggtttctctggt
gatcaaggttactatggaaacaaaggacccaagggtttgcgaggtcctcctggtcgtaaa
ggtcttcccggagtcttggtgccgggtgatcgtttaacaagaccacatttcggagatgtg
ggttttcctggtgctcttggacgacctggttctccaggtgaaccaggccaatctggaaca
cctggacagccaggtcctaaaggtcgctttggttctgtgggtaaactgggtcgtagtgga
cctcctggtcctggtgggtttattggtgatgctggaccgcctggttttcctggaccccct
ggagaacaaggacttcccggtgcatctggtcgtcctggtattcccggtggtgttggtcgc
agctccagcgtcggctacactctggtgaagcacagccagaattcccagattcccatgtgc
ccacaaggcatggccaagttgtgggacggattcagtctgctgtatgtggagggacaggag
aaggctcacaaccaggatctgggtcaacccggatcctgcctcccccgcttcagtaccgtc
cccttcctctactgctcgcccaacaacatctgctactacgccagtcgcaatgacaaatcc
tactggctctccaccaccgctcccattcccatgatgcctgtggccgatgaccaaatccga
ccctacatcagcaggtgttctgtttgtgaggctccatctcacgctgttgccgtccacagt
caggacaccaacattcccacctgtccaccaggatggaggagcctctggatcggatactcc
ttcttgatgcacacagcagcggggtcggagggcggaggtcaatccctggtctctcccgga
tcctgtctggaagatttccgtgccacgccattcatcgagtgcaacggcgccaagggcacc
tgccactacttcgccaacaagtacagcttctggctgaccaccgtggatcccgctcaggag
ttcctgtactcgccgatacaggagacactgaagggaggccaggagagattcaaagtcagc
cgctgccaggtctgcagcaagctcttgtag
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