Cynoglossus semilaevis (tongue sole): 103386268
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Entry
103386268 CDS
T04866
Symbol
pdzrn3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csem04121
]
103386268 (pdzrn3)
Enzymes [BR:
csem01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103386268 (pdzrn3)
Ubiquitin system [BR:
csem04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
103386268 (pdzrn3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF
zf-RING_5
Sina_ZnF
Prok-RING_4
PDZ_Tricorn
zf-rbx1
U-box
LemA
TRAF3_RING
zf-RING_6
IBR_1
TRAF2_zf
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
103386268
NCBI-ProteinID:
XP_008318675
UniProt:
A0A3P8VA82
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All DBs
Position
11:complement(10012245..10091410)
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AA seq
1049 aa
AA seq
DB search
MGYELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLDIKCDNHARGCDAVVKLQHLAEHAEMCEYSPAKCRNRGCSEVL
SLRDMDAHVRETCEYRPVGICESGCGLMLSHKELKTNGHCCVRALKAHNSALHYKMLSLD
RELKKQTIKANKREKSLLAQLTAVHGELQMTAQKYQKKFTEYSERIDSLTKTVASSCKES
ETRRETVVLLREGGSLGFNIMGGRPSVDNNDSTSNEGIYVSKIIENGPADKEESLQIHDR
IIEVNGKDLSKATHDQAVEAFRTAKEPIMVQVLRRSPHPTLVSASADTQVSDISTQTDIT
LQHIMALTKLPPASPAMTELEEYLLSDEHPPEHGYFDPNDFLESIQQDIEREEMEYEEVD
LYRANIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGIEIQNR
EEAVALLTSEGNQNISLLVARPELQLDECWMDDDRNHFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENIGDDQTTASNTLG
SCRKLTYSQDTIGSSDLPFNSESLMSVDYTDTDFLGITADECERFRELLELKCQIRSSGV
QGLYFQNEAAGGQDQEVVDKELELLNEELRTIELECLNIVRAHKMQQLREQCRESWMLHN
SGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGT
ENQGKASASGCGGSSSRLLRPQLSPVQEACGPSRSRVSSRDPDGLQTESKEKKLGESSKA
GRSSFHPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPIASSEMEP
KMEWKVKIRSDGTRYITKRPVRDRLLRERALRIHEERSGMTTDDDAISELKMGRYWSKEE
RKQHAVRAKEQKQRREFMKQSRADCLKDQSSAEDKKEPNIIELSHKKMMKKRNKKIFDNW
MTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgggatacgagctcgaccgcttcaaggggaccgtggacccggattttaagtgcaacttg
tgcaacaaagtgctggaggacccgctgacaactccgtgtggccacgtcttttgctcaggc
tgcgtgctgccctgggtcgtccaacagagcagctgccccgtcaaatgtcagcgtatctcc
accaaggagctgaaccacgtactgcccctgaagaaccttattctaaagttggacatcaaa
tgtgacaaccacgcacggggctgcgacgccgtggtcaagctgcagcatctggccgaacac
gccgagatgtgcgagtactccccggccaagtgccgaaacaggggatgcagcgaggttctc
agtctgcgggacatggatgcacatgtgcgggagacgtgcgagtacagaccggtggggatt
tgcgagagcggctgcgggctgatgctcagccacaaagagctgaagaccaacggccactgc
tgtgtcagagccctgaaggcgcacaacagcgcgctgcactacaagatgctgagcctggac
agagagctgaagaaacagaccatcaaagccaacaagagggagaagtcgctgctggcgcaa
cttacagccgtgcacggagagctgcagatgacggcgcagaaatatcagaagaaattcacc
gagtacagcgagaggatcgactccctcaccaagaccgtggcgtcctcctgcaaggaaagt
gagactagaagagagacagttgtcctacttcgtgagggcggatcgctgggttttaacatc
atgggaggaaggccgtccgtggataataatgacagcacttcaaacgaagggatctacgtg
tccaagatcattgagaatggtccagcagacaaggaggaaagccttcagattcatgacaga
ataatagaggtcaatggtaaagacctgtccaaggctactcatgaccaggcagtggaggct
ttccgcacagccaaggagcctatcatggtccaggtcctgcgcaggagcccacaccccaca
ttggtcagcgcgtctgctgacacccaggtgtcagacatcagcactcagaccgacatcacc
ctccagcacatcatggctcttacgaagctgcctcctgcctcaccggccatgacggagctg
gaggagtatttgctttcagatgagcatcctccagaacacggatactttgaccctaacgat
ttcctggagagcatacagcaggacatcgaacgtgaggagatggaatatgaggaggtggat
ttgtaccgcgccaacattcaggacaagctcggcctgaccatctgttacaggactgacgac
gaggatgaagctggaatttacatcagtgagattgacccaaacagcattgctgcaaaggat
ggaaggatcagagaaggagataaaatcatccagatcaacggtattgagatccagaatcga
gaggaagccgtagcactactgaccagcgagggaaaccagaatatctctctgctggtggcc
agacctgagctgcagctggatgagtgctggatggatgacgacaggaaccacttcctggat
gacctccacatggacatgttggagcagcagcaccatcaggccatgcagttcactgccagc
atgttacagcagaagaaacacgaggaggacggaggcaccactgacacagcaaccttgttg
tccaaccaccacgaaaaggacagcggcgtgggacgcaccgatgagagcacgagaaatgac
gagagctcggagcaggagaacatcggcgacgaccagaccacggcctccaacacactgggc
agctgcaggaagctgacctacagccaggacacgatcggcagcagcgacctgcccttcaac
agtgagtccttgatgtccgtggactacaccgacaccgacttcttgggcatcacggccgac
gagtgcgagcgcttcagggaactcctggagctgaagtgtcagataaggagcagcggagtt
caggggctgtattttcagaatgaggcggccggaggtcaagaccaagaggtggtggataag
gagctggagttgcttaatgaggagcttcgcaccatcgaactagagtgcctgaatattgtt
cgcgctcacaagatgcagcagctaagggagcagtgtcgcgagtcctggatgctccataac
agcggcttccgcaactacaacaccagcattgatgctcgccgccacgagctctccgacatc
acagagctgccggagaaatcagacaaggacagctccagtgcctacaacactggtgagagc
tgccgcagcacccctctgacactggagctgtccccagacaactcactacggcgaggaacg
gagaaccagggtaaagcatcagcgtcaggctgtggcggctccagcagcaggctcttgagg
ccgcagttgtctccagttcaggaagcctgtggtcccagcaggagcagagtttcttccagg
gatccagatggtctgcagacagaaagcaaagaaaagaagctgggagagtccagtaaggct
ggacggagctctttccatccgcattcaccttacaaacacgctcacatcccagcccacgcc
cagcactaccagagttacatgcagctgatccagcagaagtcagcagtggagtacgctcag
agccagatgagtctggtcagcatgtgccgcgacccaatcgcatctagcgaaatggagcca
aagatggagtggaaggtgaagattcgcagcgacggcacaagatacatcaccaagcgcccg
gtccgagacaggctgttgagggaacgcgctcttcgaattcacgaggagcgcagtggcatg
accacggacgacgatgccataagtgaactgaagatgggccgctactggagcaaagaggag
aggaagcagcacgccgtccgggccaaggagcagaaacagcgccgcgagttcatgaagcag
agccgagccgactgcctgaaagaccagagcagtgctgaagacaaaaaggagccaaacatt
attgaactcagccacaaaaagatgatgaaaaagaggaataagaaaatatttgacaactgg
atgacaatccaggaactgctgactcacgggaccaagtcaccagacggaaccagggtttac
aactcgctcctgtctgtgacaacggtgtaa
DBGET
integrated database retrieval system
