Cynoglossus semilaevis (tongue sole): 103387561
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Entry
103387561 CDS
T04866
Symbol
msh6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103387561 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csem03400
]
103387561 (msh6)
DNA repair and recombination proteins [BR:
csem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
103387561 (msh6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
103387561
NCBI-ProteinID:
XP_008320483
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Position
12:13042556..13050199
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AA seq
1379 aa
AA seq
DB search
MAKQRSLFSFFTKSPPPVSKPKTSPSPTETDMPSSVEKSNSSPKEQAKQTQQQPTRIKCD
NAKPKCDNAKPKCDSKKSANGGFSKLFSKKAASPAKSPTCPFSAGALVWAKMEGHPWWPC
MVVPQPLTGQQMRARGQAQRIHVHFFDEPPTRGWVHVKYIREYQGSDSSDAKVGGVFFSS
KPVIRHAVELADKVLFDTPEKRLKMPMCTDPSDEEEEEEEMELEQSTLTDEKFTEEDSPK
TEERSARRRSSRAVTEKSNKAKRRRIIVVSDSDDSGDEFKPEHAASSSEEDEEEETVSSE
EEKSAHESEPESPVKPVKRKRPAEKPANEKPKVSPPPVAAPKRAPAAVAADTKSRLSAYS
APDNFDSQTNDSGSNGGTTVWDHDKLEWLQDGRRKDGRRRRQTEEDYDPTTLYVPEDFLN
RNTPGMRRWWQLKSEMFDTVIFYKVGKFYELYHMDAVIGVNELGLTFMKGNWAHSGFPEI
GFGRFSDVLVQKGYKVARVEQTETPEMMEARCKSMAKPTKFDRVVRREVCRIITRGTQTY
SVLDGASSESQSKFLLSFKEKSEDESTGRCRTYGVCFVDTSVGHFNIGQFQDDRNCSRMR
TLIAHFTPVEVLFEKGNPSAETRKILKASLSSALQEGLNSGTQFWDAQKTLKTLSEEEYF
KDAACKNEEMKTKNNFLPAVLKQMTSESDSLCLTPKDGYELALSALGGCIYYLKKCLVDL
ELLSMANFEEYVPVDVEMEKAAGDVSFFAQTRQRMVLDGVTLANLEIFQNASGGTEGTLM
ERLDTCSTPFGKRLLKQWLCAPLCNPSSITDRLDAVEDLMGAQAQASEATDLLKKLPDLE
RLLSKIHSIGTPXXYEEVTYSKRKIADFLSTLDGFKTMQEIISIFASVSDEFKSAMLRQV
VSLKSKKSGLFPDLSAELKRWDTSFDHQKARSTGVISPKAGFDPEYDQALTGIKNCEREL
QEYLHRQKKRLGCKSMAYWGTGKNRFQMEVPDSVSERNIPEEYEVKSTKKGWKRYVTRKT
EKMFSELQGYEEKRDGALKDCMRRLFYNFDKNYKQWQASVECMAVLDLLLALTRYSQGGD
GQMVRPQVVLPGGKNQITPFIDLVGSRHPCVTKTFFGDDFIPNDIFIGCPGSGGTEEEEE
VKRDQALCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYAPAESLRFTPVDRVFTRLGASD
HIMAGESTFFVELSETASILHHATNHSLVLLDELGRGTATYDGTAIASAVVKELAEKICC
RTLFSTHYHSLVEDYASSPAVRLGHMACMVENECEDPSQETITFLYKFITGACPKSYGFN
AARLANLPEEVIQSGHRKARDFEKSTISLRLFRKLCQFADGASRSNTHFTSLFQLLNNL
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggctaaacaaagatcacttttcagttttttcacgaagtctccaccaccggtttccaag
ccgaagactagcccttctccgaccgagacagacatgccttcctcggtggaaaagtccaac
tcctctccaaaggaacaggctaagcaaacgcaacaacaaccgaccagaataaaatgtgac
aacgccaaaccgaaatgtgacaacgccaaaccgaaatgtgactctaaaaagtctgccaat
ggaggatttagtaaactatttagcaaaaaggccgcttcacccgcaaaaagccccacatgt
ccattcagtgctggtgcactagtgtgggcaaaaatggagggacacccctggtggccgtgc
atggtggtaccgcaacctctgactggacagcagatgagggctcgtggccaagcccaacgc
atccatgttcatttctttgatgaacctccaacaaggggttgggtccatgtcaaatatatc
agagaataccaaggctctgacagcagtgatgctaaagtcggaggggtcttcttcagtagc
aagcctgtgatccgacatgccgtggagcttgctgataaagttttgtttgacactcctgaa
aaaagattaaagatgcccatgtgcactgatccatcagatgaagaagaggaggaggaagag
atggagcttgagcagtccactttaactgatgagaagtttactgaagaggatagtcccaaa
actgaggaaaggtccgcccgtcgccgttcatcccgtgctgtcacagaaaagagcaacaaa
gccaagcggcgtcgcattattgttgtgtctgacagtgatgactctggagatgagtttaaa
ccagaacatgctgcttccagcagtgaggaggatgaggaagaggaaacagtgagtagtgaa
gaggagaagagtgcacacgaatcagaacctgaaagccctgttaaacctgtgaagcgcaaa
cgtcctgcagaaaagcctgcaaatgaaaaaccaaaagtatcacctcctccagttgctgca
ccaaaacgagctccagcggctgtcgcagctgacactaagtcacgtctctcagcctactct
gcccctgacaactttgacagccagacaaacgattcaggctccaatggaggtaccacggtt
tgggatcatgacaaactggaatggctgcaagatggccggaggaaagatggccgaaggcgg
cgtcaaacagaagaggactatgaccccacaaccctgtatgtccctgaagactttcttaac
agaaacacccctggtatgcggcgatggtggcagctcaaatcagagatgttcgatactgtg
atcttttataaggtgggaaagttctatgagctctaccacatggatgctgttattggagtc
aatgagcttggactgaccttcatgaaggggaattgggcacattcaggattcccagagatt
ggttttggacgtttctcagatgtactggtccaaaaaggttacaaggtggctcgagtggag
cagacagaaacaccagaaatgatggaagctcgttgtaagagcatggccaaacccacaaaa
ttcgaccgcgtggtcagaagagaagtgtgtcggatcatcactcgtggcactcaaacctac
agtgtgctggatggtgcatcttcagagagtcagagcaagtttctcctcagttttaaggag
aagagtgaagatgaaagcacagggcgctgtcgcacttatggagtctgctttgtggacacc
tcagtgggtcatttcaacataggacagttccaagatgatcgtaactgctcccgcatgcgc
actctgatagcacactttactcccgttgaggtgctgtttgaaaagggaaatccatctgct
gaaactcgcaaaatcttgaaggcatctctgtcctctgctctgcaggaaggacttaattca
ggaacacagttctgggatgcacagaaaactctgaaaaccctgtcggaagaagaatacttc
aaagatgctgcttgtaagaatgaagagatgaagactaaaaacaattttcttcctgctgtt
ctgaagcagatgacatctgagagtgattctctctgcctcactccaaaggatggatatgag
ctagccctctctgcacttggtggctgcatctattaccttaagaaatgtctggtggacctt
gagctgctctctatggctaattttgaagaatatgtcccagttgatgttgagatggaaaaa
gctgctggagatgtcagtttctttgcccagactcgtcagcgaatggtccttgatggagtg
acactggcaaacttggaaatctttcaaaacgcatcaggaggaactgaagggacgctcatg
gagcgcttggacacatgctccacaccatttggaaagcggttgttgaagcaatggctctgc
gctcctctctgcaatccttcatctataacagacagactggatgcagtcgaggacttgatg
ggagctcaggcccaggcttcagaggctacagacctgctgaagaagcttccagatcttgaa
cgcctcctgagtaaaatccacagtatcggcactccnnnnnnctatgaggaggtcacgtac
agcaagcgcaagatcgccgatttcctctccacgctagatggtttcaaaacaatgcaggaa
attatttccatttttgcttcagtttcagatgaattcaaatctgcaatgctccgtcaagtg
gtcagcctaaaaagtaagaagagcggcctctttcctgacctctctgctgagctgaaacgc
tgggacacgtcgttcgatcaccagaaagcccgcagtactggtgtcataagcccaaaagct
ggctttgaccctgagtacgaccaggcactgactgggataaagaactgtgaacgggagctg
caggaatatctccaccgacagaagaagaggcttggctgtaaaagcatggcttactggggc
acaggcaagaaccgcttccagatggaagtgccggacagtgtctcagagagaaatattcct
gaagagtacgaggtgaaatctaccaagaagggctggaaacgatatgtcacacggaagacg
gaaaaaatgttctcagagctgcagggatatgaggagaagagagatggtgctctgaaggac
tgcatgagaagacttttctacaactttgacaagaactacaaacagtggcaggctagtgtg
gagtgcatggcagtgctggatcttctactggccctgacccgttacagtcagggtggagat
ggacaaatggtcagaccacaagtggtgctccctggtggtaaaaaccaaatcacgcccttc
attgatctggttggatcacgccacccgtgtgtcactaagactttctttggtgatgacttc
atccctaatgacatcttcatcggctgccctggcagtggtggaactgaagaggaggaggaa
gtgaagagggatcaagccttgtgtgtccttgtcacaggacccaacatggggggcaaatcc
accctcatgagacagtgtgggctggtgatcatcctggcccagctgggctgctatgctcct
gctgagagtctgcgctttactccagttgacagggtcttcactcgactgggagcctcagat
cacattatggctggtgagagtaccttctttgtggagctgagtgaaactgccagcatcctg
catcacgctaccaaccactcactggtgctcttggatgaattaggaaggggaacggccaca
tatgacggcacagctatcgccagtgctgttgtgaaggagctggctgagaagatctgctgc
cgtactctcttctcaacacactaccactccctggtggaggactatgccagcagccctgct
gtgcggttgggtcacatggcctgtatggtggagaatgaatgtgaggatccaagtcaagaa
accatcacattcctctacaagttcatcactggtgcttgtccaaagagctatggtttcaac
gctgctcgacttgccaacctgccagaggaggtcatccaatcaggacacaggaaggccagg
gatttcgagaagagcaccatcagcctcagactcttcaggaagctctgccagtttgctgac
ggtgcttcacggagcaacacacactttacttcattgtttcagttgctcaacaatctgtag
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