Cynoglossus semilaevis (tongue sole): 103387681
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Entry
103387681 CDS
T04866
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103387681
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
103387681
NCBI-ProteinID:
XP_016892545
LinkDB
All DBs
Position
12:15295774..15326660
Genome browser
AA seq
2163 aa
AA seq
DB search
MDELTRQMDFLEDLSGERVVTESVTTSTRLSSLPPKGTSGSNHRIMSSSAGGLGLEKNVL
TQNSGATYFSSSSVGNFSSSSGVYLTGDSSGGGDGLGGYLEGDGYGSGGGTAGGGSSYHV
TSVSKVRSSSSGGGRRVQTAGSSGGLSPGFRERKIVSSRSAGYDGSSSANSSPEFTRKDY
GIYCSSGSRGRSESRESEIRARLQSASPTACRWTELDDVKKLLKGRSSSVSPTRSSSASI
TLPVPKKASSDVKTVSVATQSVSTLGSGVRTGAFNAVGTSGLYDTGLGSGQFDTGTKSSQ
YDVTVVSGQYDTGVKSGQYDAGLRSGQYDTGVSSIKHGQYDTSSSMRSGQYDTSRSGQYD
LLDAALPAFTWSTTTLPAAGTVATGGTSSYSYQVSTNNRSGAAVAVSPTSPSSLSVYGFQ
NNLAPTSVSVLTTSGANVNANLGGYGVQKNVSGSGVVSSGVSTTTRSQAEETYKNRYVIS
DKENVSAKREAEMLILAKDSGKQFTTGGSSVHIGGGSISGDSIKKEKILSSYSETAPLKT
ETHGPYYGSGVVMKDKATYAEIHRDSGIFGGGGFCCCSDACCSWWKWLLGLLLLGLLLLG
LLFGLIALAEDVRKLKNRVSTLEAESSVAAARTSRLSGSSSTINIAGAGAGAGAAGGGGS
HTDNTLLYAGGGGAGSGTSSRIGIAAGTGSSSGSNGNEIGVGVGVGAGAGGTAGGAVLGL
EPEPVAQQAVLVGPVVLEVLEFPVVLEVPVAPEFPVAQVFPVEPVLEQEPWVVLVLVLVV
VLGPALAYVYGFQNNLAPTSVSVLTTSGANVNANLGGYGVQKNVSGSGVVSSGVSTTTRS
QAEETYKNRYVISDKENVSAKREAEMLILAKDSGKQFTTGGSSVHIGGGSISGDSIKKEK
ILSSYSETAPLKTETHGPYYGSGVVMKDKATYAEIHRDSGIFGGGGFCCCSDACCSWWKW
LLGLLLLGLLLLGLLFGLIALAEDVRKLKNRVSTLEAESSVAAARTSRLSGSSSTINIAG
AGAGAGAAGGGGSHTDNTLLYAGGGGAGSGTSSRIGIAAGTGSSSGSNGNEIGVGVGVGV
GAGAGGTAGGAGGSSGSGSTGVSGGSGGTSGSRVSSGTSVSSGTSVGAGTLGGAGAGTGG
GTGTSSGGAVLSGRAGSTGSGYGGGTGFGTIVLSGGQVDTAALHMMIQHMLRTEMQSATF
RAFVANSAQGERGLPGPKGESGYPGIPGPPGHEGPKGQKGSQGEAGEQGLRGREGQTGPR
GEPGPPGFGMKGDRGSPGDLGPVGPAGPKGPAGTPGLAGQPGSQGFRGEAGPPGPKGDRG
LPGFQGAKGDPGDKGIRGMQGDPGLPGLVGPAGEKGAKGSAGVSGQDGAKGSRGDQGHSG
PPGLRGPAGPPGDSGIPGTPGLQGPPGIPGNPGQPGSKGETGPPGRIINAAGSSSVGIPG
PPGPAGPPGPAGPPGLSGPIGPAGLPGQPGPKGDRGYKGDQGEAGVTARLTESVSSSRTE
SQFGASGSSRLSGQPGPPGPPGPPGRPGDSRPGPPGPPGPPGPTGYGRPGPKGEKGDPGF
SSSSGTGTYYTGQPGPPGPPGLPGTKGSTGSPGPRGYQGEPGLPGRPGTSERVSTHTGGH
AIPGPPGPPGPPGRPGPQGFKGEPGIPGSSGAISVTSGPPGPPGPPGPPGSFSSSSEMRQ
YIVDYLSRSRQSGIPGPPGPPGPPGVPGTFTGSIEDISARIIAYLQRSGSSSGLSIGVQG
PPGPPGPPGPASGFQSVNDLIIMLQREDVRRYLSGPPGPQGPPGPPGASVGLSSSYSVEE
VATYIFNIMNDRGIARGPPGPPGPAGPPGPTSARGTGYSSITIDYSALMKNSDFRSWITS
AVQQGAPGSPGLPGQPGPPGPQGPPGVSTATVIGAGNRGYSLEDIQRYLQGSGFRGLPGP
PGPQGPQGPQGPPGGSSGSVTYTGSFPRESIRAEVQEYLTSDNVRRYITGPPGPQGPRGQ
KGERGDPGHVQGYAQSQSYTHGDSRQTSDQRAFISRLTENLDYSNVALKVTDYIKNQGLL
QEYRIDGNSKTNVRAIQGPPGPPGPPGPPGYSRVIGSYGNITADLMDFFRIHGTIPGPPG
SAGPKGDRGYPGPRGEKGDPGQPGLPGLPGAYTIQIPHGVQKRDSGTELNVRHRRHHRQA
GGA
NT seq
6492 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacgagacagatggacttcttagaagacttgtctggagagagggttgtg
acagaatccgttacgacctcgaccagactgtcttccctgcctccaaagggaaccagcggc
tcaaatcacagaattatgtccagcagtgctggagggctgggcctggagaaaaatgtctta
acccagaacagcggtgcgacctacttctcctcctcctccgttggcaatttcagctcctcc
tcgggagtttacctaacgggagactcctcagggggaggtgatggtctggggggttactta
gaaggtgatggctacggaagtggaggaggaaccgcaggaggaggaagcagttatcatgtg
acgtcagtgtcaaaggtcaggtccagttcgtctggcgggggcaggagagtgcaaactgct
ggctcgtcaggcggtctgtcaccaggcttcagggagaggaagatcgtatccagccgctcc
gcaggttatgatggaagctcaagtgctaattcttctccagaattcacgcgcaaggattat
ggaatctactgctccagcggtagcagagggaggagcgaaagccgagagagcgagatcaga
gccagattacaaagtgcttcgcccacggcctgcagatggaccgagctggacgatgtgaag
aagctgctgaagggacgttccagcagcgtcagccccactcgctcctccagtgcctccatc
acacttcctgttcctaaaaaggccagctcagacgtcaagaccgtctccgtggccacacag
tctgtttcaacattgggctctggtgtgagaaccggtgccttcaacgccgtcggtacctca
ggcctgtacgataccggtctagggtctgggcagtttgatactggaaccaaatcaagccag
tatgatgtcactgtggtatcaggccaatatgacactggtgtaaaatcaggccagtatgat
gccggtctcaggtcaggacagtacgatactggcgtcagtagtataaaacacggccagtat
gacaccagcagcagcatgcgatcagggcagtatgacaccagcaggtcaggccagtacgac
ctgctggacgctgcactaccagctttcacttggtccaccaccacgctgcctgccgccggc
acagtggccactgggggtactagcagctacagctaccaggtcagcaccaacaacaggtca
ggagcagctgtggcagtctccccaacctcaccctcctctctgtcagtttatggcttccag
aataatctggcacccacatctgtcagtgtgctgaccaccagcggagccaacgtcaatgct
aacctgggaggatatggtgttcagaagaacgtgtctggcagtggtgttgtcagctcaggg
gtgtcaacaaccaccaggtctcaggcagaggaaacgtacaagaataggtacgtgatctct
gataaggagaacgtttcagccaagagggaagcagagatgctgattctggccaaagacagt
ggcaaacagttcaccaccggtggcagcagtgttcacataggaggaggctcaatttctgga
gattccataaaaaaagagaagatcctttccagctatagtgagacggctcctctgaagacg
gagacacacggtccctactacggatctggagttgtgatgaaagacaaagctacctatgca
gagattcacagagacagcggtattttcggaggcgggggattctgctgctgctctgatgct
tgttgctcctggtggaaatggctgctgggacttctccttcttggccttctcctgctggga
ctcctgtttggactcattgcactggctgaggacgtgaggaagctaaagaatcgagtgtcg
actttggaggctgagtcttctgtcgctgctgcacgtaccagtcgactgtcaggatcttct
tcaaccattaacatcgcaggagcaggagcaggagcaggagcagcaggtggaggtggttcc
cacactgacaacacattactttatgctggaggtggaggtgcaggttcgggcaccagttca
cgcattggaatagctgcaggaactggcagctcctcaggtagcaatggcaacgaaatcggt
gttggtgttggggttggagctggagccggtggcacagcaggcggtgctgtgttggggttg
gagccggagccggtggcacagcaggcggtgctggtgggtccagtggttctggaagtactg
gagtttccggtggttctggaggtaccagtggctccagagtttccagtggcacaagtgttt
ccagtggaaccagtgttggagcaggaaccttgggtggtgctggtgctggtactggtggtg
gtactgggaccagctctggcgtacgtttatggcttccagaataatctggcacccacatct
gtcagtgtgctgaccaccagcggagccaacgtcaatgctaacctgggaggatatggtgtt
cagaagaacgtgtctggcagtggtgttgtcagctcaggggtgtcaacaaccaccaggtct
caggcagaggaaacgtacaagaataggtacgtgatctctgataaggagaacgtttcagcc
aagagggaagcagagatgctgattctggccaaagacagtggcaaacagttcaccaccggt
ggcagcagtgttcacataggaggaggctcaatttctggagattccataaaaaaagagaag
atcctttccagctatagtgagacggctcctctgaagacggagacacacggtccctactac
ggatctggagttgtgatgaaagacaaagctacctatgcagagattcacagagacagcggt
attttcggaggcgggggattctgctgctgctctgatgcttgttgctcctggtggaaatgg
ctgctgggacttctccttcttggccttctcctgctgggactcctgtttggactcattgca
ctggctgaggacgtgaggaagctaaagaatcgagtgtcgactttggaggctgagtcttct
gtcgctgctgcacgtaccagtcgactgtcaggatcttcttcaaccattaacatcgcagga
gcaggagcaggagcaggagcagcaggtggaggtggttcccacactgacaacacattactt
tatgctggaggtggaggtgcagggtcgggcaccagttcacgcattggaatagctgcagga
actggcagctcctcaggtagcaatggcaacgaaatcggtgttggtgttggtgttggggtt
ggagccggagccggtggcacagcaggcggtgctggtgggtccagtggttctggaagtact
ggagtttccggtggttctggaggtaccagtggctccagagtttccagtggcacaagtgtt
tccagtggaaccagtgttggagcaggaaccttgggtggtgctggtgctggtactggtggt
ggtactgggaccagctctggcggtgccgtcttgagtggaagggcgggcagtactggctct
ggttacggcggaggaaccggctttgggactattgttttgagtggaggacaggtcgatact
gctgctctccacatgatgattcagcacatgctcagaacagagatgcagtcagcaacattc
agagctttcgtagctaactcagctcagggcgagcgaggacttcctggtcctaaaggtgaa
agtggatatcctggaattccaggtcctccaggccatgaagggcctaaagggcagaaggga
agccaaggtgaagctggtgaacaaggcctgagaggtcgtgaaggtcagactggcccccga
ggtgagccaggtcctccaggatttggaatgaaaggagacagaggttctcctggagatctc
ggacctgtcggcccagctggaccaaaaggcccagcaggaactcctggccttgcaggacaa
cctggttctcagggtttccgtggcgaggcaggaccacctggacctaaaggagacagagga
cttcctggattccaaggagctaaaggtgacccaggtgacaagggtatccggggtatgcaa
ggtgaccctggtttacctggtcttgttggaccagctggagaaaaaggagccaaaggatca
gcaggagtgtctggacaagatggagcgaaaggatcaagaggtgaccaaggacattctggt
ccccctggactcagaggtcctgctggtcccccaggagattctggaattccaggaacacct
ggattacaaggaccaccaggaataccaggaaacccaggacaaccaggaagcaaaggcgag
acaggtccaccagggagaatcatcaacgcagccggttcctcatctgttggcatccccgga
ccacctgggcctgctggtcctcctggtcctgctggacctcctggtttatcaggtcccatt
ggtcctgcaggtctgccaggtcagcctggtcctaaaggtgacagaggatataagggagac
cagggtgaagctggcgtgacagcgagattgactgagtctgtttcatccagcaggactgag
agtcagtttggagccagtggatcctccagactatctggacaacctggcccaccaggtcca
cctggacctcctggacgtccaggtgattccaggccaggacctccaggaccacctggacct
ccaggtccaacaggttatggtagaccagggcctaaaggagaaaagggagacccaggtttt
tcatccagctctggaacaggaacatattacaccggacaaccaggtccacctggtccacct
ggactgcctgggactaaaggatcaacaggttctcctggaccaagaggctatcaaggtgaa
ccaggtctgccaggaagaccaggaacctctgagagagtatctacccatactggaggacat
gcaatccctggacctcctggtccaccagggccccccggacgtccaggaccacaaggattc
aagggtgaacctggaattccaggctcttcaggtgccatttctgtcacttcaggacctcca
ggtcctccaggtccccctggacctcctggatctttctcaagttctagtgaaatgcggcag
tatattgtggactacctcagcagaagcaggcagtccggtattccaggacctccaggtcca
cctgggcctccaggagtacctggaactttcactggctccattgaggacatctctgctcgt
atcattgcatacctacagaggtcaggatcaagttcaggccttagcattggagtccagggt
cctccaggaccacctggacccccaggacctgcctctggattccagtcagtcaatgacctc
attatcatgcttcagagggaagatgtgaggaggtatttgtcaggaccaccagggccgcag
ggaccaccaggaccaccaggggcatcagttggactttctagcagttacagtgtagaagag
gtggccacttacatcttcaatatcatgaatgacagaggaattgctagaggaccacctgga
ccccctggccccgctggtcctccaggaccaactagtgcaagaggcaccggctacagcagc
ataacaatcgactattcggcactgatgaaaaattcagacttccgttcctggattacatct
gctgtgcaacaaggtgctcctggttctccaggcctcccaggtcaacctggtcctcctggg
cctcaggggcctcctggagtctccactgccaccgttattggagcaggaaatcgtggctat
agcctggaggacattcagcgttatctgcaaggttctggcttcagaggtcttcctggtcct
cctggtcctcagggcccccagggaccacagggtccaccgggcggttccagcggctcagtc
acatacactggaagcttcccaagggagagcatccgtgctgaggttcaggagtacctgacc
agtgacaatgttcgtcgttacatcactggaccaccaggacctcaaggaccaaggggtcag
aaaggagagcgtggagatccaggtcacgttcagggctacgcacagagtcagagctacact
cacggtgactctcgccaaacctctgaccaaagagcgttcatcagcaggctcactgagaat
ctggactactccaatgtcgctctgaaggtcaccgactacatcaagaatcaagggttgttg
caggaatatcgtatcgatggcaattctaaaaccaatgtgagagccattcagggcccaccc
ggtccccccggtcctccaggaccacctgggtacagccgcgtcatcggttcctacggcaac
atcacagctgatctcatggacttcttcagaatccatggcaccatccctggacccccagga
agcgccggaccaaagggagacagagggtacccaggacccagaggagaaaagggtgaccct
gggcagccaggtttaccaggattaccaggggcgtacaccatccagattccacacggagtg
cagaagagagactcaggcaccgagttgaatgtccgtcacagacgccatcatcgtcaggcc
ggcggagcttaa
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