Cynoglossus semilaevis (tongue sole): 103387710
Help
Entry
103387710 CDS
T04866
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103387710 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csem04131
]
103387710 (vps8)
Membrane trafficking [BR:
csem04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
103387710 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_Vps41
WD40_CDC20-Fz
Clathrin
TPR_VPS8_2
zf-RING_Vps41
zf-RING_5
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_UBOX
ANAPC4_WD40
zf-RING_2
zf-C3HC4
Beta-prop_EML_2
Beta-prop_HPS5
WDR55
zf-C3H2C3
EIF3I
zf-rbx1
PHD
Motif
Other DBs
NCBI-GeneID:
103387710
NCBI-ProteinID:
XP_008320689
LinkDB
All DBs
Position
12:complement(16167891..16195194)
Genome browser
AA seq
1400 aa
AA seq
DB search
MSESPDTRSLVSASSQLNLMEVGTIDDKEFDIPQVDTPPTLESILNELDDEEEPFVLEDT
CVMSTDNMDTHSCDTSSLASSDSGDPAHLKRRRRTVDANTSVHGSVLRRSLLKGISAQIV
SAADKVDAGLPTAITVSAVIAVGTSHGLALVFGKDTNQALRLCLGTKTTGAEFGAVSALS
INHDCSRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGG
SVFELAFRRVMGMRSCDSRCLFSGSKGEVCCIEPLRAPLDFRDHPITQYSLLAMASLTKI
LVIGLKPSLKVWMTFPYHQSDPASVPQLAWQFVAVQKAVNPILAFCKGDTVHFLLVKKEE
TGTIHVIKQRQLHLSCDIISLCWINSRTLVLVDSHEKLHVVDRPSQEVLETLDLEQVQLV
YNSRHFKSLATGGNVSQALALVGEKACYQSVSSQGGQIVYLGTKSAHIMTLRVWRERIDC
LLKQEHFVEALSLAWSFHEGTAKAVVGLFGDPVKRKSVVGDKMVEILFQFAEYALKKCPE
HGKIQVMEQHFHDVVPVLVDYCLLLQRADLLFNQLYSRLLENTVAKGVFLESLESYIVAD
RVGHLTTPIMKDLLAHYHGNGMMDSLERCIVHLDVTSLDIQQVVQVCWTNHLYDAMIYVF
NSGMNDYVTPMEKLFAVIGPPLREGRSLTDHQVVMGNKLLVYISCCLAGRAYPLGDIPED
LVVQVKNQVFDFLIRLHSADSTDEEEVFPFIRTLLHFDTREFLNVLAMTFEDFKNDKQAL
EYQQRTVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCCP
DDDSRHTERQQVLLELLQVGGVVQFNEERLLALAEKAKFYQICEFLYEKKHLYDRIIDCY
LRDPLRKREIFSYVHNLLSMPSYSVEERQSVREKALQHMKDLVDIDPSKSADVVMFHFAD
NVQEIIAELNNDELIFKFLSSLLEPREGRRFQNTLPLQLELHELLLDLMCRFAPEGLLSF
LQNSQHYRLEEAIQITQKRHRSEATAYLLEQKGDVHGAFSVLLEMLKDRLCLFTAEGGTG
GGAEGQRCGGDDLPLTRVKESLDDIISLCVRSSHSLDEEQRQVLWFPLLEAMMASQKLVK
EPNAKHTSEVLKELTMKVLNSMSSFIPLPAIIQRILQDPVYGKGKLAEIQGLILGMLDTF
NYEQTLLETTTNLLNYDLHWSLAHLRATVMRGLHPRQDHCNICLQQYKRRQDSAEEIIVF
SCGHLYHIQCLQQKESGCGPASERQQQWSCYKCSSSHGGKGGTCIELKRGRTTSLAQTRI
ASAQKDKGAESHRKVLVEATLDPQQEQAWDQLRCLYRGQSKLSLLTELSHCYNEKAGPLF
PAQGLDQFQLKLAPPPVLED
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtctccggacacccggagccttgtttccgcctcctcacagctcaacctgatg
gaggttggcacgatcgatgataaagagtttgatattccccaggtggacacgccccccacg
ctggagagcatcctcaatgagctggacgatgaggaggaaccatttgtcctagaggacacg
tgtgtgatgagcaccgacaacatggacactcattcctgtgacacgtcctctttggccagc
tcggatagtggagaccccgctcaccttaaaagaagacgcagaacggtggacgcaaacacg
tcagtgcacggatctgttcttcgacgcagtctgttgaagggcatctccgcgcagatcgtc
tctgcagctgataaagtggatgctggattgccgaccgctataacagtgtcagctgtgatt
gctgtgggaacatctcatggactggccctggtttttggaaaagacaccaaccaggctcta
cggctctgcctgggtaccaagacgaccggtgcggaattcggagcggtctccgccctcagc
atcaaccatgattgctcgagacttctctgcgggtttgccaaaggacagattacaatgtgg
gatttggccaacgggaaacttttgaggacgatcactgatgcccatcctcctggaacagct
atactacatgtgaagttcacggatgatccgactctcgcggtgtgcaacgacagcggagga
tccgttttcgaacttgccttcaggagggtcatgggaatgcgctcctgcgactctcgctgt
ctcttcagcggctctaaaggagaggtctgctgtatcgagccgctccgcgcccccctagat
ttcagggaccatcccatcacacaatactctctgctggctatggcgtccctcactaaaatt
ctggtaattggactgaagccctccctcaaagtctggatgacctttccctatcatcagtcc
gatccggccagcgttcctcagctggcctggcagtttgtcgctgttcagaaagcggtcaac
cccatcttggctttttgcaaaggcgacacggtccacttcctgctggtcaaaaaggaggag
acggggacaattcatgtcatcaaacaacgacaactgcacctgagctgtgacattattagc
ctctgttggatcaacagtcgtacactggtcctggtcgacagccatgaaaagcttcatgtt
gtggaccggcccagtcaggaggtgctggagactctggacctggagcaggtgcagctggtt
tacaacagcagacatttcaaatcgctggctactggaggcaacgtctctcaggctctggct
ttagtcggagagaaggcctgctaccaatctgtttccagccaaggagggcagattgtgtat
ttgggcaccaagtcggctcacattatgaccttacgagtttggagagagcgcatcgactgc
ctgctgaaacaggagcattttgtcgaggcgctctccttggcctggtccttccacgaaggg
acggcaaaggccgtagtcggcctttttggagatccggtgaaaaggaaatcagtggtgggt
gacaagatggttgaaatccttttccagtttgctgagtacgccttaaagaagtgtccagaa
catggcaagattcaagtaatggaacagcattttcatgacgtggttccagtcctcgtggat
tactgcctgcttttacaaagagccgacctgctgtttaaccagctctattcccgcctgttg
gagaacacggttgctaaaggggttttcctggagtccctggagtcgtacattgtcgccgac
cgcgtcggtcacctcacaacccccatcatgaaggacctcctggctcattaccacggaaac
ggtatgatggacagtctggagaggtgcatcgttcatctggacgtcaccagccttgacata
cagcaggtggtccaggtgtgttggaccaaccatctctacgatgccatgatctacgttttc
aacagtggcatgaatgactatgtcacacctatggagaaactgtttgccgtcattgggcca
ccacttagagagggcagaagcctaacagatcaccaggtggtgatgggaaacaaacttctc
gtctatattagttgttgcctcgcaggacgtgcatacccactgggggacatcccagaagac
ctcgtggttcaagtcaagaatcaggtgttcgacttcctaatccgcctgcactcagccgac
tccaccgacgaagaggaggtgtttccgtttattcgtacgctccttcatttcgacacccgt
gagttcctgaacgtcctggccatgacgtttgaagactttaagaatgacaaacaggccctc
gagtaccagcagaggacagtggacattttactacaggtgatggtggacaacccggacttt
actccctcccaggtgggcggactcttcacctttttggctcgtcaactggccaaaccggac
aacacgctttttgtgaacaggaagctttttgatcaggttttggagttcctgtgttgccca
gacgatgattcccgacacacagagaggcagcaggtcctgctggagctgctgcaggtcggc
ggtgtggtccagtttaatgaagagcgactgttggccttagccgaaaaggctaagttctac
caaatctgtgaatttctgtatgagaagaaacatctttatgacaggatcattgactgctac
ctcagggaccccctcagaaagagggagatcttcagctacgtacacaatctgctgtctatg
cccagctacagcgtcgaggagaggcaaagtgtcagggagaaagctctacagcacatgaag
gatctggtggacattgacccgagcaaatcagccgatgtggtcatgtttcactttgccgac
aatgtgcaagaaatcatcgctgagcttaacaatgatgagctgattttcaagttcctcagc
agcctcctggaaccaagggagggacgtcgattccagaacactctgcctctgcagcttgag
ctccatgagcttctactggacctgatgtgccgatttgcacccgaggggttactgagcttc
ctgcagaactctcagcactacagactggaggaggccattcaaattacgcagaagcgtcac
cgtagtgaggccacagcctatctgctggagcagaagggagacgttcacggagccttttct
gtcctgttggagatgttaaaggacagactgtgtctcttcaccgccgaggggggaactggt
ggtggagcggaaggtcagcggtgcggtggggatgatttaccgctgaccagagtgaaggag
tcacttgatgacatcatctccctgtgtgtacggagctcacacagcctggacgaggaacaa
agacaggttctttggtttccacttctggaggccatgatggcttcccagaaactagtgaag
gagcccaacgccaaacacacctctgaggttctgaaggagctgaccatgaaggttctcaat
agcatgagcagtttcattcctttgcctgccatcattcaacgaatcctacaggaccccgtt
tacggaaaagggaaactagcagaaatccagggcctgattctgggaatgctggacactttt
aactatgaacagactttgctcgaaacaaccactaatctcttgaactacgacctccactgg
tccctggctcacctgcgtgctaccgtcatgagggggcttcacccacggcaggaccactgt
aacatctgcctgcagcagtacaagaggaggcaggactcagccgaggaaatcatcgtgttc
agctgtggccacctctaccacatccagtgtctgcagcagaaggaaagcggttgcggcccc
gcttcggagcgacagcagcaatggagctgctacaagtgttcttccagccacggtgggaag
ggaggaacgtgtattgaacttaaaaggggtcgcaccacatccctggcacagactcgtatt
gcttctgcgcagaaggacaaaggagcggaatctcaccggaaggttttggttgaagcaaca
ctggacccacagcaggaacaggcatgggaccagctgcgctgtttatatcgaggacagtcc
aagttgtccttacttacggaactctcccactgttataacgagaaggcaggacctctgttc
ccagcccaaggattagatcaattccagctgaagctcgcgccgccgcccgtgctggaggat
taa
DBGET
integrated database retrieval system
