Cynoglossus semilaevis (tongue sole): 103388122
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Entry
103388122 CDS
T04866
Symbol
col6a6
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04510
Focal adhesion
csem04512
ECM-receptor interaction
csem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103388122 (col6a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103388122 (col6a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
103388122 (col6a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csem04147
]
103388122 (col6a6)
00536 Glycosaminoglycan binding proteins [BR:
csem00536
]
103388122 (col6a6)
Exosome [BR:
csem04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
103388122 (col6a6)
Glycosaminoglycan binding proteins [BR:
csem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103388122 (col6a6)
Hyaluronan
Extracellular matrix or blood plasma proteins
103388122 (col6a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_CoxE
VWA_4
Motif
Other DBs
NCBI-GeneID:
103388122
NCBI-ProteinID:
XP_016893128
LinkDB
All DBs
Position
13:complement(3471929..3503067)
Genome browser
AA seq
2717 aa
AA seq
DB search
MEGGQSLLLILMVGLCFHSITAQRTVCTQEGVADIVFMVDGSWSIGTKNFEQIRQFLYTL
VNSFDVGPDRVRIGLVQYSTTPRTEFLLNTYQNKSDILDYISKLPYMGGGTETGQGLDFM
MREHFIDAAGSRAKQNVPQIAVVITDGKSQDNVESHANELKKKGIVIYAIGIKEADEEQL
REIANLPHSQHVYSVSDFTALQGISLSVVQTLCTTVEEAKRQLLQLSTECAAATKADIVF
LVDGSSSIGSKNFADAQNFLRSAVEGLDIGPDKVRIGLXXXXXXXXXXXXXXDHMDKQSL
LTQISSFPYLTGGTQTGEAIKFINQTYFTEEAGSRANQRVPQIAVVITDGESTDDVIEPA
KSLREKGVMVFAIGVGQANIKELQSMANKPSEHFVFHLDNYQALLAKKDELLQTVCVSME
DQRQALAEKFSDIFFLLDGGLSSTEFGQVRNILVRLSNQLKVGASAHRLGLAFYGQDTRV
EFFLNSYQTKEDIQSKIKKVRIGQLQPNEKRNLGNALEQARTRFLIKEAGSRADQGYQQY
LVVFSGQDSNDDVDRFSHLIKSEGVTVAGVSLGVSSSQMKDISTPGYYFQSNTNLVPSLK
SVFEGQEQAFSQTQDCRAAFLADIVFIVDESGSIGTKNFQLVRTFLHTVISGIEVGSNRV
RLGIVTYSAKATAHVYLDSFDNKKDLLNFVKILPYRKGGTQTGAALNFTRENVFVKNRGS
RKDXGFQQVAVVITDGKSDDDVSRAAAELRRTGVTIYSVGIKNATKEELVKIVSHPPNKH
IFMVNDFTKLRSVEQTLQKILCQDIVHQAITVQTRRTNIKEECLQTDEADIFFLIDQSGS
IHPPDFYDMKKFIFEFLNNFRIGPQHIRVGIVKYADDPVLEFDLTTYSDVKTMKKAVEDM
LQVGGGTETGKAITFMGPQFDRAEVTRGYKVSEYLVVITDGQSTDDVKVPAKKLQSQGVT
VYAIGVQNADQEQLREIAGDPKRTFFVNDFDALNPIKDNIITDICSTDACKDIPGDLVFL
IDSSGSIDSLDYEKMKEFMKTIISRSAIGIDDVHIGVMQYSTKPRLEFSLSFTYNKDEMN
TAVDKMQQIGGGTHTGQAITAVSQLFDGGRSKLRQRLVVITDGESQDAVAAPAEALRAKG
VAIYAIGVVNANTTQLLEISGSSDKMYSGRDFDALKDLENQISLDLCAKEGECRKTQQAD
VIFLVDGSTSISLPKFRSMQKFMSAMVNQTTVGKDLTRFGVILYSTYPKNNFTLETYGSK
KEVLQAIQDLTPPRGDTYTGLALEYSLDFFSAANGGRAALKVPQVLMVITDGEATDPHHL
EKPSMALRNNGISVFSIGVEEANKEELEIMAGHDASKIFYVDNFDALETLYKNLSLVLCN
STKPVCEKQKADLVFLLDQSGSITTNDYTIMKKFTTDLIKSFKVGEDLVRVGLAQFSDTF
QHEFYLDKFYSEQEVTKHIMGTVQTGGGTKIGKALDSIRDYFQASRGGRRSSGISQNLVL
ITDGDSQDEVLAAAERLRALKVEVFVIGIGHVQVMELLQITGTPDRLFTVQNFGSLEKIK
DKVVDTICKSKPIENPSGCTIDVAMGFDISRRSGTPGEMLVSGHTKLQALLPEIGHYASS
VSELCCSKPDLIRTNVGYRVVGRNGQQIDDFKFEAYSEEVLRKVMTLNLKEPTYFNSALL
KSFGQKFKAESGAGVKVLIIFSDGLDEDVMRLEQESELLRKSNINALLVVALEGARNPAE
LQMVEFGRGFGYKLPLSIGMPSVGSTILKQIDAVSNRECCSVMCKCSGHEGVHGSRGHPG
SKGVTGQKGYPGFPGEEGVAGERGFPGPSGPQGLQGCSGNRGTKGNRGLRGNRGDDGEDG
LDGVNGEQGMTGKDGVGGERGRRGDPGIPGIRGEAGLKGQRGLRGDPGEPGADKNSPGAK
GESGNPGLPGPPGSNGQPGESGVVGNQGPDGRRGAAGEKGAVGPPGDKGQPGIDGPSGSR
GPQGIRGQPGPKGIFGLPGPQGAPGAPGEVGGAGRRGAVGQKGQPGDPGVQGGPGQQGAR
GPPGQDGRDGYGPPGAKGAKGDHGFPGYPGLVGETGPDGSKGFPGPKGNRGRNGNSGPSG
ETGLPGAGGNPGHTGSRGPPGVRGMTECQLITYIRDNCACSFDRTDCPAFPTELVIGLDM
SEDVAPAVFERQRSAALALLEDVGIAESNCPTGARVAVVGYSAYTRYLVRFQDYRHKKQL
IEFVKNIAPERTTNQRHLAAAMRFVAHNVFKRVRSGMMMRKVAVFFSSGPSQDVSDLVTA
VMEYRGLNIVPAIVSTRNAPGMRKAMELDDSGNSIFTVLGRDMAADLRKVKNCAICYDPC
RRSEECGFIQGTAPPQDVDVDLAMVVDSSREVQGDQYTGFQELLGSIVEQLAVSSQPRRA
GTQARVAVVQQSGTKTPKVEFSLQTYQDQQVMRTHLLQKMHQLGGASYLGLTLNYTLTEV
LKKATNARRKKLLLVVVGTQTAHEDHALLQYVSNKVKCEGVAVFVLTVGDRYSRVQVEEL
ASVPVHQHLIHLDRLKAEEQTYTQRFFRVFLNALNRGVNTYSTASIKQACERVEAQEREQ
SSTYSQSQVGQWAELETVMAEEPREQFQQQTRGRTQTGQIDVMDTLLPGDAGFSSIIWFS
PTDAEQFLSRTVENNFPSKEACFLRQDPGGCQSYNMMWFFDPEQSECSRFWYGGCGGNGN
RFTTQDECESLCLSKSR
NT seq
8154 nt
NT seq
+upstream
nt +downstream
nt
atggagggggggcagagcctactcctcatcctcatggtaggattgtgtttccacagcatc
actgctcagagaacagtctgtacgcaagagggcgtcgccgacattgtcttcatggttgac
gggtcgtggagcatcggtacaaaaaactttgagcagatccgccagttcctctacacactg
gtcaacagcttcgacgtcggtcctgatcgagtccgcattggattggtccagtacagcacc
acaccgcgcacagagttcctgctaaacacctaccagaacaagtctgacattctggactac
atcagcaagttgccctacatgggcggtggcactgagacgggccagggcctggacttcatg
atgagggaacatttcatcgatgccgccggaagcagagccaaacagaacgtccctcagatc
gccgtggtcatcacagacgggaagtcacaagacaacgtagagtctcacgctaatgagctg
aagaagaagggtatcgttatttacgccattggaatcaaagaagccgatgaagagcagctc
agggaaattgccaacctcccccacagccagcacgtttacagcgtgtctgacttcactgct
cttcagggaatctccctgagcgtggttcagacgctgtgcaccacagtggaggaggccaaa
cgacagctcctgcaactgtccacagaatgtgccgcagccactaaggctgacattgtcttc
ctggttgacggttcctccagcattggcagcaagaactttgccgacgctcagaatttcctc
cgcagcgcggtcgaaggccttgacattggccctgataaagtccggattggactnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaccacatggacaagcagtcactg
ctaacacagatcagctcgttcccctatctaacaggaggaacacagacgggagaagcgatt
aaattcattaatcaaacctacttcaccgaggaggccgggagccgagccaaccagcgggtg
cctcagatcgccgtggtcatcacagacggtgaatccacagatgatgtaatcgagcctgct
aagagtctacgggagaaaggcgttatggtgttcgctatcggtgtcggacaggctaacatc
aaggagctccagtccatggccaacaagccttcagagcactttgtgttccacctagataac
taccaggctctgctggccaagaaggacgagctgttgcagaccgtctgcgtctccatggag
gatcagagacaagcgttggctgaaaaattttcggacattttcttcctgttggacggcggc
ttaagttccacagagttcgggcaagtccggaacatcctggttcgactgtccaaccagctg
aaggtgggggcgtctgcccatcgcttgggcctagccttctacggacaagacaccagggtg
gagttctttctcaacagctaccagaccaaagaagacatacagagtaaaatcaagaaggtc
cgcatcggtcaactgcaacccaacgaaaagcgcaacctagggaatgccctggaacaagca
aggactcgcttcttaatcaaagaggctgggagtcgtgcagaccaagggtaccaacagtac
ctggtcgtgtttagtggacaagattctaatgatgacgtggacaggttttcacaccttatt
aaatctgaaggagtgacggtggcgggcgtatctctgggtgtgtcctctagtcaaatgaaa
gacatttccacaccgggctattattttcaatccaacaccaacttagtgccgtcgctgaag
tctgtgtttgagggacaggaacaagcattttctcagactcaagattgtagagcggccttc
ctagccgacatcgtcttcatcgttgacgagtccggaagcatcggaactaaaaatttccag
ctggtgcgtacattcctacacactgtgattagcggcattgaggtcggttcgaacagagtg
cggcttggaattgtaacgtacagcgctaaggccacagcacatgtctacctcgacagcttc
gataacaagaaggatctgttaaactttgttaaaatcctgccttatcgcaagggaggaacc
caaacaggagccgccctgaatttcaccagggaaaatgtttttgttaaaaatagaggaagc
aggaaagactaaggttttcagcaggtggcagtagttatcactgatggcaaatccgatgat
gacgtgagccgagcagcagcagaacttcgtagaaccggcgtcaccatttactctgttgga
attaaaaacgctaccaaggaagagctggtgaaaatagtctcgcatcctccaaataaacac
atttttatggtgaacgacttcaccaaactcaggtctgtagagcagactcttcaaaagatt
ctctgtcaggacatcgtgcaccaggctattaccgtccagaccagaagaactaacatcaaa
gaagaatgcttgcaaacagatgaagctgatattttcttcctcatcgaccaatcggggagt
atccaccctccagatttctacgatatgaagaagttcatctttgagtttctcaacaatttc
cgtattgggccacagcatatccgtgtgggtattgtgaaatatgcagacgaccctgtcctg
gagtttgacctgacgacctattctgatgtcaagacaatgaagaaagccgtggaggacatg
ctccaggtgggaggaggcaccgagactggaaaagcaattacttttatgggcccacagttt
gacagagcagaggtaacacgtggctacaaagtctcagagtacctggtcgtcatcactgat
ggacagtcaaccgacgatgtcaaggttcctgccaaaaaactccagtcccagggtgtcacg
gtttacgccatcggggtgcaaaacgcagaccaggaacagttgagagaaattgcgggcgac
cccaaaagaacattctttgtgaatgactttgacgccttaaatcccatcaaggataacatc
atcacagatatctgttctacagatgcctgtaaagacataccaggagacctggtctttttg
attgacagctcaggaagcattgactcattagactacgagaaaatgaaggagttcatgaaa
accatcatcagtaggtccgccattgggatcgacgacgtgcacattggtgtcatgcagtac
agcaccaagccgaggctggagttctctctcagcttcacttacaacaaagatgagatgaac
acggccgttgacaaaatgcagcaaatcggaggaggtacgcacaccggccaggccatcact
gccgtgtctcagctctttgacggagggcgttccaaactgaggcagaggttggtggtgatc
acagacggggagtcccaagacgccgtcgcagccccggctgaagctctgagagccaagggt
gtggccatctatgccattggagttgtgaacgccaacacgactcagctgctggagatcagc
ggctcctccgacaagatgtattctgggagagactttgatgctttaaaggacctggagaac
caaatttctttggacctgtgtgcaaaagagggagagtgtaggaagacacagcaggctgac
gtcattttcctggtggacggttccaccagcatcagccttcccaagttcaggagcatgcag
aagtttatgtcggccatggtcaaccaaaccacggtgggtaaagacctgacccgcttcggt
gtcatcctctactccacctaccccaaaaataacttcaccctggagacgtacggctccaaa
aaagaggtgcttcaagccattcaagacctaacgccgccaagaggagacacctacaccggc
ctggccctggagtactccttagacttcttcagtgctgccaatggaggtcgggctgctctc
aaggtgcctcaggttctcatggtgatcacagacggtgaagccactgaccctcaccatctc
gaaaagccttcgatggcactgagaaacaacgggatcagcgtcttcagcattggtgtggaa
gaagccaacaaggaagagctggagatcatggcaggtcacgacgcttccaaaattttctac
gtggacaattttgatgctctggaaactctgtacaagaacctttctctggttctctgcaac
tccaccaaaccagtttgtgagaagcagaaggccgacctggtcttcctcctggatcagtct
ggaagcatcacgaccaacgattacaccatcatgaagaaattcaccactgacctgatcaag
agcttcaaagtcggtgaagatctggtccgtgtgggcctggcccagttcagcgacactttc
caacacgagttctacctcgacaaattctacagcgagcaggaagtcaccaaacatattatg
ggcactgtgcaaacgggaggaggaaccaaaatagggaaagcactggattccatcagggat
tattttcaggcgtcacgcggcggccgcagatcttcagggatttctcagaatctggtactg
atcactgacggagattcacaggacgaagttctagcggctgccgagcgtctcagagccctg
aaagtcgaggtgtttgtcatcggcatcggacacgttcaggtcatggagctcctgcagatc
actggcaccccagacagactgttcactgtgcagaactttggcagcttggaaaagatcaag
gacaaggtggtggataccatctgcaagtccaaacccatagaaaatccaagtggctgcacc
atcgatgttgccatgggctttgatatctctcgacgaagcggaacgcctggtgagatgttg
gtcagcggccacaccaagctccaggccctccttccagagatcggacattacgcttcctcg
gtatcagagctgtgctgctccaaacccgacctcatcaggaccaacgtgggctacagagtg
gtgggccggaacggacaacaaatcgatgacttcaaatttgaggcctacagtgaggaggtg
ctgaggaaggtcatgacccttaatctgaaggaacccacttacttcaactccgctctgctc
aagtcctttggtcagaagttcaaagccgagtccggggctggtgtgaaggtgctgatcatc
ttctcagatggactggatgaagacgtgatgagactggaacaggagtcggagctcctgcgg
aagtccaatatcaacgctctgctggtggtggctctagagggcgctcgtaaccccgccgag
ctgcagatggtggagtttggacgtggctttggctacaaactcccgctgagcatcggcatg
ccgagtgtgggcagcaccatcctcaaacagattgacgccgtgtcgaacagggaatgctgc
agcgtcatgtgcaagtgctccggacacgaaggcgtccacggatctcgcggacaccctgga
tcaaagggtgtgacgggtcagaagggatacccaggattccctggagaggagggcgtggct
ggagaacgaggatttccaggacccagtggacctcaggggctgcagggctgctccggtaac
agaggaacaaagggaaaccgaggtctgcgtggcaacaggggagacgatggagaggacgga
ctggacggagtgaacggagaacagggaatgacgggaaaagacggcgtcggaggagagaga
ggacgaagaggagacccaggaattccgggaatccgaggagaggcggggctgaaaggacag
cgaggactgcgaggtgatccgggtgaacctggagccgacaagaacagccccggagccaag
ggggaatctgggaatcctggtctacctggaccccctggatccaacggtcagcctggtgag
agtggagtggtgggaaaccaaggtccagatggaagaagaggagcagctggagagaagggc
gcagttggacctcctggagacaaaggacaaccaggcattgatggaccttctggttctagg
ggtccccaaggtattagaggtcaacctggacccaaaggaatatttggacttcctggacct
cagggagcaccaggagctccaggagaagtaggaggcgcagggagacgaggagctgtcgga
cagaagggtcaaccaggagatcctggagtccaaggaggtccaggacagcagggagccaga
ggacctccgggtcaggatggtcgagacggatatggacctccaggagccaagggagcaaag
ggagatcatggatttcctggatatcctggtttagtgggtgagacgggtcctgatggatct
aaaggatttccaggacctaaagggaaccgaggtcgtaacggaaactctggtccatctgga
gagacgggacttcctggagcgggggggaatcctggacacacgggatccagaggtccacct
ggagtcagaggcatgacggagtgtcagctgatcacttacatcagagacaactgtgcctgt
tccttcgatcggaccgactgtcccgccttccccactgagctggtgattggtctggacatg
tccgaggacgtggcgcctgctgtctttgagaggcagcgctccgccgctctggccctgctg
gaggacgtcggcattgcagagagcaactgtcccactggagctcgtgtggccgtggtgggt
tacagcgcctacaccaggtacctggtccgcttccaggattaccgtcataagaagcagctg
atagagtttgtgaagaacatcgccccggagaggacgaccaaccaacgccacctagctgcc
gccatgcgtttcgtggctcataacgtcttcaaacgtgtccgatcgggaatgatgatgagg
aaagtcgccgtcttcttttctagcggaccttcgcaggatgtgagtgacctggtgacggcc
gtgatggagtaccgcggcctcaacattgttccggccatcgtctccaccaggaacgctcca
ggaatgcgcaaagccatggagttggacgactcggggaactccatcttcaccgtgctgggc
agagacatggccgctgacctgaggaaggtgaagaactgcgccatctgttacgacccgtgc
cgacgctcggaggagtgcggcttcatccaggggacggcgcctcctcaggacgtggacgtg
gatctggccatggtcgtggacagctccagggaggtgcagggagaccagtacaccggcttc
caggagctgctgggttctatcgtggagcagctggccgtcagctcacagccgcgccgcgcc
ggcacccaggcccgggtcgccgtagtccagcagagcggaaccaagactcccaaagtggag
ttcagtctgcagacctaccaggaccagcaggtgatgagaactcacctcttacagaagatg
caccagctgggcggagcctcgtatttggggctgacgctgaactacaccctgacggaggtt
ctgaagaaggccaccaacgcccgcaggaagaagctgctgctggtggtggttggcacccag
acggcacacgaggaccacgccctcctgcagtacgtctccaataaggttaagtgtgagggc
gtggccgtgtttgtgctgacggtgggcgatcgctacagccgcgtgcaggtggaggagttg
gccagtgttcctgtgcaccagcacctgatccacctggaccgactgaaggctgaagagcag
acgtacacccaacgcttcttccgagtcttcctcaatgctctcaacaggggagtgaacacg
tattctactgcatcaataaaacaggcctgtgaaagggtggaagctcaggaacgagaacag
agctccacctatagtcagagtcaggtggggcagtgggcggagctagaaacagtgatggcg
gaggaaccgagggaacaattccagcaacagaccagaggacggacgcagacgggacagatc
gacgtgatggacacactactgccaggagacgcaggattctcatcaatcatatggttctca
cccacagacgcagaacagtttctcagcagaaccgttgagaacaacttcccctccaaagag
gcctgtttcctgcgtcaggaccccggaggttgtcagagctacaacatgatgtggttcttt
gacccagaacagagtgaatgttcgcgcttctggtacggaggctgcggcggaaatggaaac
agattcacgacgcaagacgagtgtgagagcctgtgtctgagcaaaagccggtga
DBGET
integrated database retrieval system
