Cynoglossus semilaevis (tongue sole): 103388460
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Entry
103388460 CDS
T04866
Symbol
arid1a
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103388460 (arid1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csem03000
]
103388460 (arid1a)
03021 Transcription machinery [BR:
csem03021
]
103388460 (arid1a)
03036 Chromosome and associated proteins [BR:
csem03036
]
103388460 (arid1a)
Transcription factors [BR:
csem03000
]
Eukaryotic type
Helix-turn-helix
ARID
103388460 (arid1a)
Transcription machinery [BR:
csem03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103388460 (arid1a)
Chromosome and associated proteins [BR:
csem03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103388460 (arid1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
103388460
NCBI-ProteinID:
XP_008321661
LinkDB
All DBs
Position
13:9734482..9749875
Genome browser
AA seq
2311 aa
AA seq
DB search
MAAQVASAAALNTSPPSELKKPDREPKEDSVTGEKQSDKKQPSLDSGSPGRGDLQDGAEA
GNAGGGGEPEMKNGNGNPPRANNNNQNDSVGPEGNNHPGLAHHHGTAFPPPSYGYGQPYG
RAPFHQHGGQQSPGMAAAAGPVVQSSNMMDPYQTNSHDHGFSNHQFNNYNPFPNRTPYPG
QGYAMNSPRSSQAPTAGGQPAKQQPPTGGPTAMAPSYSNQRYNIGNPQPTSTPTLNKLLT
SPSSTRGYPNYPSGDYGSQEGASKGPADMGSSGQYGGSNPGWQQRGHHPSSMSPGSAGQP
LGRNQPPGPMDPMGKIRGQLYGAGSPYGQQSQQGPPTGPQQGPGYPGQGYGPPGPQRYPV
GMQGRTPGGMGGMPYGPQMGSYGQQGPGGYGSQGQAPYYGQPGQGPHPSQQQGPYSQPPP
GQPGSQTSYPGQPHPPPTSAPHSQGGPPYQQPHMPQQPQGPLPGPPQGPPQSQPPYSQAS
APQSGQSPYAQQQGPPSQAPQQPSSQPPPGSQGQPNYPGSSQGPQQPPSQQQQAQSQPQQ
QPPGHGQHPQGQPTVYPQNPQQAQQSPYQRFPPPQQQEVSQDSFQSNAPPSTQNKPGPED
GQGRPSSLPVSHSPYFTADLSGSIDDLPTGAEGALSPGVSTSGVSSSQGEQSNPAQSPFS
PHTSPHLSGIRGPSPSPAGSPASASTPRTGPLSPATMPGTQMPPRPSSVQSDGSLHPTMN
QSPMTQDRGFMQRNPQMPAYGSPQSASALSPRQSSGGQMHPGMAPYPQNNSMGGYGQQGG
QYGPQGYPRQPGYGNMPNANYPGPGMGPMNPMAGQGGGPPYGGMPPGRMPPNQMGARPYG
PNMGPTMGPNMGPNMPPNMGNIPPQVGSGMCPPPGMNRKPQDPAAMQHPPTNSMHNRMSG
YPNMGPGMMGSGPPYGPSMNSMSGMMNTQGGSPYPMGPNMANNSSGMAPSPEMNNKMNNK
VDGSGTPKPEPKSKVRSKSNSSTTTNEMITRLYELGPEPDRKMWVDRYLAFIEEKAMGMT
NLPAVGRKPLDLFRLYMSVKEIGGMTQVNKSKKWRDLATSLNVGTSSSAASSLKKQYIQC
LYAFECKIERGEDPPPEIFTDNKKSQAAKVQPPSPASLCSTAGSGSLQGPQTPQSTSSSM
AEGGDLKPPTPASTPHSQMPPMPPMSRSSVNLQDPFSEGNDPGFPRKNMTPNSAYQSSIN
APDMQGRMGPYEPNKDPFSNIRKVGEQFLPASQGPNSGMGDQSQQQPPQQQPPFNRGPPG
GMGTLPMGPRQQYPYGPGYDRRSEQGMGPDGSMGSGAPQPNPMMPANTDTGMYSPNRFPP
QQPRHDSYGNQFPGQGTPPTGSYPNQQPGMYPQQQQSYKRHGEGAYPPSKRHESEYSGPF
PGGQQPPQQQPQQVGTPAPSSGQQESYNQYGSSGPYPGSDRRPPGPGNQFPYSFSRDRMQ
GGSGPNAQPTMPPQMMQSEGPQGSMWQGPRDMNYQNFTSRQSGPGGPPQGPGYPGMNRSE
EMMSSEQRMNHDGQWGGQMGPRQPPYGPAGPGQPMPRSVQSNYQPPQGVQNHIPQVSSPA
SMPRPMESRTSPSKSPYIHGVMKMQKAGPPVPASHIVPPPVQSPLIRRDMPFPPGSVEAT
HPILKPRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDGSISTFDLNTL
PGFLELVVEYFRRCLIEIFGILQEYEVGDPGQRTLLDPDALKQDWDITEEEETQPEDMEQ
QEDDDDEEEEEEQETDGPVHVKEEEDQEQCTTASQGPDESTEDEERKAKGPASDQAGLQL
LPAQDRPKQASKFDKFPLKVVRKKDPFVAGQSSNYGKIQEFDSGLLHWSAGGGDSTEHIQ
THFEPRKDFLEPRERIPVPSALLKRRVPEEETREHYLPTLEEISKDQDKEESPKESSSSE
NATVSEKASPPHSTEEEEEEKEKKTLSEIIDKAALSHQENNRAVTSTGSVLSLRVQQTGT
ILEDEPHSKDEGPLITLANWQDSLARRCICVSNIIRSLSFVPGNDHEMSKHPGLLLLLGR
LILLHHRHPERKQAPLTYEKDEETDEGVGQKDEWWWDCLELLRENTLVTLANISGQLDLS
IYPESICLPLLDGLLHWAVCPSAEAQDPFPTLGPHSALSPQRLVLETLSKLSIQDNNVDL
ILATPPFSRLEKLYGNLVRLIGDRKIAVCREMAVVLLANLAQGDTLAARAIAVQKGSVGN
LLGFLEDSLAATQLQQSQSSLLHLQGMHFEPTSPDMMRRAARALHALAKVEENHSEFTLH
ESRLLDLSVSPLMNSLVSHVICDVLFLIGQS
NT seq
6936 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgccgccgctcttaacaccagcccgccttccgaattaaaa
aagccggatcgagaacctaaggaggattcggttacgggggagaaacagtcggacaaaaaa
cagccgagtttggacagcggatcaccgggccggggggatctgcaggacggggccgaggct
ggaaatgcagggggaggaggggaacctgagatgaagaacgggaatgggaacccgcccagg
gctaacaataataatcagaatgactctgttggaccggagggaaataaccatccaggtcta
gcgcatcaccacggaaccgcttttcccccaccttcgtacggatacggccagccctacggt
cgggccccttttcatcaacatggcggacaacaaagccctggcatggcagctgctgcgggt
ccggttgtgcagtcgagcaacatgatggacccgtatcaaaccaattcacacgaccatggg
ttttcgaaccaccaatttaacaactacaacccattcccgaacaggactccatatccaggc
caaggctacgccatgaactcgcctcgcagtagccaggcgccgacagctggggggcagcca
gctaagcaacagccaccaacaggaggacctacggcgatggctccctcgtacagtaaccag
agatataatattgggaatcctcagcctacatccacaccgacactgaacaagctcctaacg
tcccccagctcaacgcggggttatccaaactatccgtctggtgactacggtagccaagaa
ggagctagtaagggaccagcagacatgggcagtagcggtcagtatggagggagcaatccg
ggctggcaacaaaggggccatcacccgtcgtctatgagcccgggaagtgccgggcagccg
ttgggcagaaatcagccacctggacccatggatccaatgggtaaaataagaggccagcta
tatggagcaggtagtccatacggccaacagtcacagcaggggcctcctacaggtccacaa
caggggcctgggtaccctggacagggatatggccccccaggtccacagcgatatccagtg
ggaatgcaaggacgcacccctggaggaatgggtggcatgccatacggtccacagatgggc
tcctatggacagcagggaccaggaggatatggttctcaaggtcaggccccatactatggt
cagccaggccagggtcctcatccaagtcaacagcaagggccatactctcagccccctcct
ggacagccaggtagccaaacatcttacccagggcagccccatcctccaccaacttctgct
cctcacagccagggaggaccaccttatcagcagcctcacatgccccaacagccccagggg
ccactgccaggcccacctcaagggcccccacaatctcagccaccatactctcaagcctca
gccccccagtcgggccagtctccctatgcccagcaacagggtcctcccagtcaggcccca
cagcagccaagttcccaaccaccccctggatcacagggccagcccaattacccaggatca
tcacaggggccacagcagcctccctcgcagcaacagcaggcacagtctcagcctcaacag
caaccgccagggcacggccaacacccacagggccagcccacagtataccctcagaacccg
cagcaagcacaacagtcaccttatcagcgatttccccctcctcaacagcaggaggtatcc
caggactcatttcagtccaatgctccaccatcaactcagaataaacctggtccagaggac
ggccaaggccgcccttcaagcctcccagtcagtcattctccttacttcacagctgacctg
tctggttccatcgatgacctgcccactggtgcggaaggtgcgctcagtccaggtgtgagc
acttcaggagtgtcaagcagccagggtgagcagagtaacccggcacagtcgcccttctct
cctcatacgtctccccacctgtcaggcatacgagggccttcaccttccccagctggctct
cctgccagtgccagcacaccccgtacaggaccactgtcacccgccaccatgccagggacc
cagatgcctccaaggccctcaagtgtgcagtcagatgggagcctacacccaacaatgaac
cagtctcctatgacccaggacagaggttttatgcagagaaaccctcagatgccagcgtac
ggctctccccagtcggcgtcagcactgtcgccgcgccagtcttcaggggggcagatgcat
cctgggatggccccatatccgcagaacaactccatgggtggctatgggcaacaaggaggg
caatatggccctcaaggctaccctcgccaacctggctatggcaacatgccaaatgccaac
tacccagggcctggaatgggtccaatgaacccaatggcagggcaaggtggtgggccaccg
tatggaggcatgcctccaggtaggatgccccccaatcaaatgggggcacgtccttatggc
cccaatatgggtccaactatgggccccaacatgggtccaaacatgccacctaacatgggc
aacataccacctcaggtgggctcaggaatgtgcccacctccaggcatgaacagaaaaccc
caggatcctgcagccatgcagcaccctcccaccaactccatgcacaacaggatgtctggt
taccctaacatgggtccagggatgatgggatctggaccaccttatggcccttccatgaac
agcatgtctggaatgatgaacactcagggtggatcaccttatcctatggggcccaacatg
gccaataactccagtggtatggccccaagtccagagatgaacaacaaaatgaataacaaa
gtggatgggagtggaacgcccaagccagaacctaagtctaaggtccgcagtaagtccaat
tcttccacaacaaccaatgaaatgataacacgactgtacgagttaggacctgagccagac
aggaagatgtgggtggaccgttacctggccttcattgaagagaaggctatgggcatgacc
aacctacctgctgtagggcgcaagccccttgacctcttccggctctatatgtcagtgaaa
gaaatcggaggaatgacacaggtgaataagagcaagaaatggcgtgacctggccacttct
cttaatgtgggcacatccagcagtgcagccagctctctgaagaaacagtatatccaatgt
ttgtatgcatttgagtgcaaaattgagcgtggtgaggatccgccaccagaaatcttcaca
gacaacaaaaagagccaggctgctaaggtccaaccaccgtctccagcgtccctctgctcc
acagctgggtcaggctctctgcagggtccgcagacaccacagtccaccagcagctccatg
gctgagggtggagacttgaaacctccgactccagcatccactcctcattctcagatgccc
ccgatgcctccaatgtccaggagtagcgtcaacctgcaggacccgttttctgaaggaaat
gaccctggtttcccaagaaagaacatgacgcccaactcggcctaccaatccagcattaac
gccccagacatgcaggggcgcatgggtccctacgaaccaaacaaagatccgttcagtaac
atacgcaaagttggggagcagttcttacctgctagccaagggcctaacagtgggatgggt
gaccagtcacagcagcaaccaccacaacagcagcccccatttaacagaggaccacctgga
ggaatgggcaccctgccaatgggacccaggcagcagtatccttatggacccggctatgac
aggagatcggagcaaggcatgggcccagatggaagcatgggatctggtgcccctcagcca
aacccaatgatgcctgccaataccgatacagggatgtattcgccaaatcgtttcccacca
cagcagccacgacatgattcctatggtaatcagtttcctggacagggaacgccccctact
ggctcatacccaaatcaacagcctggaatgtacccccagcaacagcagagttataagcgc
catggagaaggtgcttatcctccatcaaaacgtcatgagagtgagtacagtgggcctttc
cctggtggacaacaaccaccgcagcagcagccacagcaagtaggcaccccagcaccctct
tcaggacaacaggagtcctacaatcagtacggcagcagcggaccctatcctggctctgat
cgccgccctcctggtccaggcaatcagttcccctactcctttagtcgtgatcggatgcag
ggaggttcaggtcccaacgcgcagcccaccatgccccctcagatgatgcagtcagagggt
cctcaggggagcatgtggcaaggaccacgagacatgaactatcagaacttcaccagtaga
caaagtggccctgggggcccaccccagggacctggctaccctggcatgaaccgttcagag
gagatgatgtcatcagaacagcgtatgaatcatgatggtcagtggggtggtcagatgggg
cctcgacagcccccttacggtccagcagggcctggccaaccgatgccccgatcagtacag
tccaactatcagccccctcagggtgtgcagaaccacattccacaggtgtccagcccagcc
tccatgcctcgcccaatggagagccggacatcacccagtaaatccccttacatacatgga
gtaatgaagatgcagaaggctggacctccagtgccggcatcacacatagtgccccctccg
gtacagtcacctctgataaggagagacatgccttttcccccaggctctgtagaagccact
catcctatcctgaagccacgacggagactcactatgaaagatattggaacaccagaggcc
tggagagttatgatgtctctgaaatctggtttgttggctgagagtacatgggccttagac
accattaacattctgctgtacgacgacggcagtatttcaacctttgatctcaacacgtta
cctggcttcttggagttggttgttgagtatttcagacgctgcctgattgaaatctttggc
attctccaagagtatgaggttggagatcctggccagaggacgcttcttgatcctgatgct
ctgaaacaagactgggacattactgaagaagaggagacacagcctgaggacatggaacaa
caagaagatgatgatgatgaggaggaggaggaggaacaagaaaccgatgggccagttcat
gtaaaagaggaggaagatcaggagcaatgcaccacagcatctcagggcccagatgagtca
acagaggatgaggagaggaaggctaaaggtcctgcgtccgatcaggccggcctgcagctc
ttacctgcccaagacagacccaaacaggctagcaaatttgacaagtttcctctaaaggtg
gtacgaaagaaagacccatttgtagctggccagtctagtaattatggcaaaatccaagag
tttgacagtgggctgcttcattggagtgcgggaggaggagactcaaccgaacacattcag
acccacttcgaaccacgcaaagacttcttggagcctcgagaacgaatacctgttccctca
gctttgctaaagagacgggtccctgaagaagagacacgggaacattatttaccgactttg
gaggagataagtaaggatcaagacaaagaagagagtcctaaagagtcgtcctcctcagag
aatgcaaccgtctccgaaaaggccagtcctccacacagcactgaggaggaggaggaggag
aaggagaagaaaactcttagtgagataattgataaagctgctttaagtcatcaggagaat
aacagagcggttacttccactggcagcgttttatccctgcgggtgcagcagactggcacc
atcctggaggatgagcctcacagtaaagatgaggggcccctcattacactggccaactgg
caggactccttggcccgtcgttgcatttgtgtctccaacatcattcgaagtctctctttt
gttcctggcaatgaccatgagatgtccaaacacccagggctgttgctgctacttggacgc
ctgattctgctccatcacagacaccccgaacgcaaacaggctcccctcacctacgaaaaa
gatgaagagaccgatgaaggagtaggccagaaggatgaatggtggtgggactgtttggag
ctcctgagggagaacacactggtcacattggccaacatatcaggccagcttgatctttcc
atctacccagagagcatctgcttgcccctactggatggtctcctccactgggctgtctgc
ccctcagcagaagctcaggatccattccccactctgggcccccacagtgctttgtcacct
cagagactggtcctggaaacgttaagtaaattaagcatccaagacaacaatgttgacctc
atcctggctactccaccattcagtcggttagagaagctgtacgggaacctggtgcggcta
attggagaccggaagattgcagtttgcagggagatggccgtggtcctactggccaacctg
gcccagggtgataccctggcagcccgagccattgctgttcagaagggcagtgtgggcaac
ttgctgggcttcttggaggatagtctggcagccacacagcttcagcagagccagagctct
cttcttcacctacaggggatgcattttgaacccacaagtccggacatgatgcggcgagca
gcccgggctctgcacgccttagccaaggtggaggagaaccactcagagttcacactacac
gagtcccgactcctcgacctttcggtgtctcccctaatgaactcactggtttctcatgtt
atctgtgatgtactctttttgataggccagtcatga
DBGET
integrated database retrieval system
