Cynoglossus semilaevis (tongue sole): 103388837
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Entry
103388837 CDS
T04866
Symbol
dhx16
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103388837 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csem03041
]
103388837 (dhx16)
Enzymes [BR:
csem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103388837 (dhx16)
Spliceosome [BR:
csem03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103388837 (dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
103388837 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
Flavi_DEAD
Cas3-like_C_2
nSTAND3
PWI
Motif
Other DBs
NCBI-GeneID:
103388837
NCBI-ProteinID:
XP_008322252
UniProt:
A0A3P8VX99
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All DBs
Position
13:17932023..17949574
Genome browser
AA seq
1048 aa
AA seq
DB search
MANLEQWVNDRLHDILGLSDRYVSQFMIGTARKAQSAEDFVSRIQQTGTIDINPSVIVFA
QDLFNKIPRKLVVEKESRVAERQAIEMDRKNRTYTLLEDSDSDQGDVREKQKVKKKSKDK
PNKRSHIRLKKESQSSSEDETTKSASISDLKNEEEEEEEEWEKEERERLQDIKERDAFAE
RVRQKDKEKTRNISERTDRKAYEEAQKRLKMAEEDQNNMLPELRKQSRREYLKKREAEKM
EDLEAEIIDEEYLFATDELTEREKKDLEYKRTLRDLAKDYKKAGVKEQEERKNRYYIPEE
KRNKEVPQRDLELEETTMELGGEQGRWEEERLKTASLSFGAKKEREQGMKYEREKYQLVL
EEDEMIDFVSTAITMKGTRTVKDEEEPALSQAEMKKQSMQEVRRSLPIYPYRDDLLKAIQ
EHQILVIEGETGSGKTTQIPQYLVEDGYTKGGMKIGCTQPRRVAAMSVASRVAQEMGVKL
GNDVGYCIRFEDCTTEKTILKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDILF
GLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEADYLE
ACVVSVLQIHLTQDPGDILVFLTGQEEIEACCELLQERCRRLGSKIAELLVLPIYANLPS
EMQTKIFEPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIVTP
CSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLKSLGIN
DLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILASEQ
YNCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQWVESNY
STQWCYENFIQFRSMKRARDVRDQLEGLMSRIEVEVVTCNGDSGPVRKAVTAGYFYHTAR
LSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSSWLLEVAP
HYYKSKELEDSSSKKMPRTQGKTKEELG
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctagaacagtgggtcaacgaccgcctccatgacatcctgggtttaagtgac
cgatatgtttctcagttcatgattggaactgcaaggaaagcgcagagtgccgaagatttt
gtgtctcgcatacagcagactgggaccattgacatcaacccaagtgtgattgtgtttgct
caggacctcttcaacaagatacctcgcaagctggttgttgagaaagaatcccgggtggct
gaacgtcaagccattgaaatggacaggaagaatcgcacctacacattattggaagacagt
gatagtgatcaaggtgatgtgagagagaaacagaaagtaaagaagaaaagtaaagacaaa
ccgaataagaggagtcacatcagactgaagaaagagagtcaatcctctagtgaagatgaa
acaaccaaaagcgcgagcattagtgatttgaaaaatgaagaggaggaggaggaggaggaa
tgggagaaagaagagcgtgaacgattgcaagacatcaaagagagggatgcgttcgccgag
cgagtgaggcaaaaagacaaagagaagacccgcaacatatcagagaggactgacagaaag
gcctatgaggaggctcaaaagcggctcaagatggcagaagaggatcagaacaacatgttg
ccagaattaagaaagcagtctagaagggaatacctaaagaagagggaggcggaaaagatg
gaggatctggaagccgaaatcatcgatgaagagtaccttttcgctactgacgagttgact
gagagggagaagaaagacttggaatacaaacgtacccttcgtgatctcgctaaggattac
aaaaaggcaggggtgaaggagcaggaggagaggaagaatcgatactacattccagaagaa
aagagaaacaaggaggtgccacagagagacctggaactggaggaaacgaccatggagctg
ggaggggagcaaggtcgctgggaggaagagaggcttaagaccgcgtccctgagttttggg
gccaaaaaagaacgagagcaggggatgaagtatgagagagagaagtaccagctggtcctg
gaggaggatgagatgattgattttgtcagcaccgccattaccatgaagggaacaaggact
gtaaaggatgaagaggaaccagctttgtcgcaggctgagatgaaaaaacagtccatgcag
gaggtgagacgttctcttcccatctacccctacagagatgaccttctaaaagccatccag
gagcaccagatcttggtcattgaaggggaaacgggctctggaaaaaccacacagattcca
cagtacctagtagaagatggctacacaaaaggaggcatgaaaattggatgcacacagcct
cgcagggtggcagcaatgtcagtcgcatccagagtggcacaggaaatgggtgtcaagctg
gggaatgacgttggttactgcattcgtttcgaggactgcacaacggagaaaacaattctc
aagtacatgaccgatggcatgcttctacgagaattcctcactgagcctgatcttgcaagc
tacagcgtgatcatcatagatgaagcccatgagcgaacgctccacactgacatcttgttt
gggctgattaaggacattgctcggttcagaccagacttgaaggtgctagttgcaagtgcc
acgttggacaccgagcgcttctcctgcttttttgatgacgctcctgtcttcaggatccca
ggcaggaggttccctgttgatatcttctatacaaaagctccagaggcagactatctggaa
gcatgtgtggtgtcagtgctacagattcacctaacccaggatccaggagatattctggtc
ttcctcaccggacaggaggagattgaagcctgctgtgagcttctccaggagcgatgtcga
cggctcggctcaaagatagccgagctgctagttcttcctatttacgccaatctgccatcg
gaaatgcagacgaagatatttgaacctacaccaccgggagcccgtaaggtggtggtggcc
acaaacattgcagaaacctccctgaccatagatggaattatctacgtcattgatccgggt
ttctgtaaacaaaagagttacaatgcccgcactggcatggagtcactaattgtcacaccc
tgctctcgtgcttcagccaatcagagggctggccgtgcaggcagagtggctgctgggaaa
tgttttaggctttacacagcctgggcatttaaacatgaaatggaggaaacaactgtgcct
gaaattcaaaggaccaacttgggaaatgttgttctgctgctgaagagccttggtatcaat
gatctcatccactttgattttatggatccacctcctcatgagacactcgtcttggcactg
gaacaactttatgctcttggagctctcaaccacctgggggagctcaccaagctgggccgc
aggatggccgagttacctgtagaccccatgctgagcaagatgattctagcatctgagcag
tataattgttcagaggaagttctaacaatagcagcaatgttgtctgtgaacaactccatt
ttctaccgacccaaagataaagtggtgcacgcagacaatgctaggatgaactttgtggta
ccagggggagaccacttggtgctccttaacgtttatacacagtgggtggaaagcaactat
tccactcagtggtgctatgaaaacttcatccagtttcgctccatgaagagagcccgtgat
gtcagagaccagttggagggcctgatgagtcgcatcgaagtggaggtggtcacctgtaat
ggagacagtgggcctgttcgcaaggcagtgacagcaggatatttttatcatactgcacga
cttagcaaaggtggctacaagacagtgaagcaccaacagacggtgtatgtccatcccaac
agctctctgtttgaggagcagccgcgctggctcatctaccacgaactggtcttcacaacc
aaagagttcatgagacaggtgattgagatagacagcagctggctgctggaagttgcccct
cattactataagagcaaagagctggaggacagcagcagcaagaaaatgccccggacacaa
ggaaaaacaaaagaagagctgggctga
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