Cynoglossus semilaevis (tongue sole): 103389148
Help
Entry
103389148 CDS
T04866
Symbol
ythdc2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csem03041
]
103389148 (ythdc2)
Enzymes [BR:
csem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103389148 (ythdc2)
Spliceosome [BR:
csem03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103389148 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
Helicase_C
OB_NTP_bind
Ank_2
DEAD
Ank
R3H
Ank_3
Ank_5
Ank_4
AAA_19
ATPase
nSTAND3
AAA_23
NACHT
PhoH
AAA_7
AAA_29
ABC_tran
AAA_22
Motif
Other DBs
NCBI-GeneID:
103389148
NCBI-ProteinID:
XP_008322665
UniProt:
A0A3P8WTQ3
LinkDB
All DBs
Position
14:complement(3255961..3270507)
Genome browser
AA seq
1219 aa
AA seq
DB search
MSPNTAQLNDSHVEEEFKMAVELCLERFQYSEQKELEFPSCFSGAERAYIHRMAQSLGYI
SRSRERGLERFITVWKKQSEGKSLTTAPITVSHKSVHLIVSLLEKFPVRYREDTDGQFSP
ENCTVPVQTDNSREKFKPTGFLHNSTPLVPNKRSPSELESFRCSLPIHKYQDEIVNLIKT
NKVVLVVGENGSGKTTQIPQFILDDCFNRGETCRMFCSQPRRLAVSSVAERVAAERGETV
GQTVGYHIRLENRISPKTLLTFCTHGVLLRTLMTGDASLKTVTHVILDDVDDRDDMTDFL
LTKMRTMLQKIPTLKLILSSAAVNVDLLRQYFGTCQVLNVTGRQFEVKEIFLEDILKLTS
FNPPAIQKHKDEKMRREKQSTCFIDSTEGVKYGGIDRKQNRTANGNTLDRENSTTTKHTS
LPPSLQTEVTPEQLMQEMDYCISNCFFSEDLDSFNHLFDLICNKNANVDYKHSDMGATPL
MVAASRGLLSQIEQLLNMGADVNIKATNGWTALDFARSCQHPDAVDLLQASFPLSEVNVF
EGESGESEVFSEDQELDLIMNLLHYICSNTCEGAVLIFVAEYSEILALRYRILYDDQRFA
AHSERFQVFALYSDTQTVDQKTVMGASTPGVRRIILSTNIAESSITISDVVFVIDTGKVK
EISFDSVSHLSVFKKGWISKASALQRKGRAGRCRPGICFHLFSLSTFSNMEEFKASRLLQ
IPLQGLCLQAKLLVPSSCSVADFLSKAPEPPPADAISKAVQRLMVIDAMDQDEELTFLGC
YLADVSIKPHLGKMVLCAVVLKCLDPVLTIACILAYRDPFILPTEGTQRRKALLCRKHFS
SSSFSDHMALLRAFQAWQRARRDGCERSFCERNFLSQATMEMIFDLRVQLLGQLRAIGFV
RPRGSSNIHELNQNSENWAVVKAALVCGMYPNMFYVDQKTLQPLSHTDRKIYFHPTSVLN
LFKEIKPAKSAEILPTSWFIYDEICRGERRSTVRCCSLVTSFTVAIFGGRAMLPGSPLQE
YSIPRPVGLSCPDSQLEDSDSDTEDMAEIKVDKSFSFQANTEAAGLLNKLKQMWQSLFIK
RIRFPSRSYTQREEVILQILVSVLTEEEQRAGLQQPSGIGQRPWPMAVGDFPQTSVKNSE
SSSPQTAAGSDPDREASGLFQAKAYSRDVASLCRGQLSADLWMSCTLTPRSSPNSSPQET
KQGLEADLQEPTRISSWIL
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgagcccaaacacagctcagctgaatgacagtcatgtggaagaagagtttaagatggca
gtggagctttgtttggagaggtttcagtacagtgagcagaaagaacttgagtttccctcc
tgcttcagcggtgctgagagggcctatattcatcgaatggctcagtccttaggttatatt
tctagaagtagagagaggggattggaacgcttcattactgtttggaagaagcagagtgaa
gggaaatcactgaccactgctccaatcacagtctctcacaaatctgtacatttaattgtt
tctctccttgagaaatttcctgtcagatatagggaggatactgatggtcagtttagtcct
gaaaattgcacagtacctgtacagactgacaacagccgggaaaaattcaaaccaacagga
tttttacacaacagtactcccttggtgcccaataagaggagtccgtcagaactggaaagc
tttcgatgctccttgccgatccataaatatcaggatgaaattgtcaatctcataaaaaca
aacaaagtggtgctcgtggttggagagaacggctctgggaaaactacacagattccacag
ttcatcctggacgactgctttaacagaggtgagacctgcaggatgttctgttctcagccc
agacgtctggctgttagttcggtggctgagagggtggcagcagagaggggagagactgtg
ggccagactgtgggctatcatatcagactggaaaacagaatttcacccaagacacttcta
acattttgcacccatggggttttgctgagaacactgatgactggagatgccagcctgaaa
actgtcacacatgtcatcctggatgatgtggatgaccgtgatgatatgacagactttctg
ctcactaagatgcgaactatgcttcagaagatcccaacactgaaactgatcctgtccagt
gcagcagtgaatgtagacctgttacgtcagtactttggcacatgccaagttcttaatgtc
acaggaaggcagtttgaagtaaaggaaatttttctggaggacattctgaagctgacatcc
ttcaaccccccagccatacaaaaacacaaggatgaaaaaatgagaagggagaagcagtca
acatgtttcattgactctactgagggagtaaagtatggtggcattgacagaaaacagaac
aggactgccaatggaaatacactggacagagagaatagcaccaccaccaagcatacaagc
ttaccaccaagcttacagacagaggtgacaccagagcaactgatgcaggagatggactac
tgcatctccaactgtttcttcagtgaagacctggattcttttaatcatctgtttgacctc
atctgtaataaaaatgctaacgtggactacaaacacagtgacatgggagccacacctctg
atggtagcagccagtcgggggctcctcagtcagatagagcagctgctcaatatgggtgct
gatgtcaacatcaaggcaactaatggatggacggctttggattttgccagaagctgccaa
catccagatgcagtggatcttctccaagcctcatttcctttgagcgaggtgaatgttttt
gaaggggagtctggagagtcagaggtttttagtgaagaccaggagttggacctcatcatg
aatcttctccactacatttgctccaacacctgcgagggagcagtgctaatatttgtagcc
gaatactctgagatactggccctaagatatcggattctatatgatgaccaaagatttgct
gcccacagtgagagattccaggtgttcgctttatattcagacacacagactgtggatcag
aagacggtcatgggtgcttcaacgcctggagtcagaagaattattctttctactaacatt
gctgagagcagcatcaccattagtgatgtggtgtttgttattgacacaggaaaagtcaaa
gagatatcttttgacagtgtgagtcatctttcagttttcaagaagggttggatttcaaaa
gccagtgccctgcaaaggaagggaagagccgggcgctgtagaccaggaatctgcttccat
ctctttagtctctccaccttcagcaacatggaagaatttaaggcatctcgactgctgcag
ataccactgcagggactgtgtcttcaggccaaattgctggttccctcgtcctgttcagtg
gctgactttctgtccaaggctcccgagcctcctccagcagatgccatcagtaaagctgtg
caaaggctaatggtgatagatgctatggaccaggatgaagagctgactttcttaggctgt
tacctggctgatgtatccatcaaaccccacctggggaagatggtgctgtgcgctgtggtg
ctcaaatgtctggacccagtgctaaccattgcatgtatactagcctaccgagaccccttc
atccttccgaccgagggaactcagagaagaaaggccctgctctgtcgcaaacatttctct
tccagcagctttagtgatcacatggccctgctgagagcatttcaggcctggcagagggct
cgccgtgatggatgtgagagatcgttttgtgagaggaacttcctgtctcaggccaccatg
gagatgatatttgacctgagagttcagttgctgggacaactgcgtgccattgggtttgtg
cgacctcgaggaagcagcaatatccatgaattaaatcagaactcggagaactgggccgtc
gtgaaggcagctcttgtgtgtggcatgtatccaaacatgttctatgtggaccaaaagacc
ttgcaacctttgagccacacagacagaaaaatctactttcatcccacatcagtcctcaac
ctgttcaaagagatcaagcctgcaaagtctgctgagatcttgcccaccagctggttcata
tatgatgagatttgtcgaggagagaggaggtccaccgtccgctgctgctctttggtgact
tcctttaccgtggccatatttggaggtcgtgccatgttgcctggttctcctctacaggaa
tattctatacccagaccagttggtctgtcttgtccagacagtcagctggaggacagtgac
agtgacacagaggacatggctgaaatcaaagtagacaagagtttctccttccaggctaac
acagaagctgcaggactcttgaacaaactgaagcagatgtggcagagtttatttatcaaa
aggatacgctttccctcaaggtcatatactcaaagagaagaagttatactgcagatcctg
gtgtcggtgttaactgaagaggagcagagagctggtctgcagcagccttctgggattggc
caacggccatggccaatggctgtaggagatttccctcagacctctgtgaaaaactcagag
agcagcagccctcagactgcagctggctctgacccggacagggaagcctcaggtttgttt
caggcgaaagcctacagcagagatgttgcttcactgtgtagaggtcaactctctgctgac
ctgtggatgtcctgcactctgacccccagaagttcccccaatagcagtccacaggagaca
aaacagggactagaagctgacctgcaggaacccacaaggatcagctcctggatcctgtga
DBGET
integrated database retrieval system