KEGG   Cynoglossus semilaevis (tongue sole): 103389148
Entry
103389148         CDS       T04866                                 
Symbol
ythdc2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
  KO
K20099  ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6]
Organism
csem  Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:csem00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csem03041]
    103389148 (ythdc2)
Enzymes [BR:csem01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103389148 (ythdc2)
Spliceosome [BR:csem03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    103389148 (ythdc2)
SSDB
Motif
Pfam: HA2_C Helicase_C OB_NTP_bind Ank_2 DEAD Ank R3H Ank_3 Ank_5 Ank_4 AAA_19 ATPase nSTAND3 AAA_23 NACHT PhoH AAA_7 AAA_29 ABC_tran AAA_22
Other DBs
NCBI-GeneID: 103389148
NCBI-ProteinID: XP_008322665
UniProt: A0A3P8WTQ3
LinkDB
Position
14:complement(3255961..3270507)
AA seq 1219 aa
MSPNTAQLNDSHVEEEFKMAVELCLERFQYSEQKELEFPSCFSGAERAYIHRMAQSLGYI
SRSRERGLERFITVWKKQSEGKSLTTAPITVSHKSVHLIVSLLEKFPVRYREDTDGQFSP
ENCTVPVQTDNSREKFKPTGFLHNSTPLVPNKRSPSELESFRCSLPIHKYQDEIVNLIKT
NKVVLVVGENGSGKTTQIPQFILDDCFNRGETCRMFCSQPRRLAVSSVAERVAAERGETV
GQTVGYHIRLENRISPKTLLTFCTHGVLLRTLMTGDASLKTVTHVILDDVDDRDDMTDFL
LTKMRTMLQKIPTLKLILSSAAVNVDLLRQYFGTCQVLNVTGRQFEVKEIFLEDILKLTS
FNPPAIQKHKDEKMRREKQSTCFIDSTEGVKYGGIDRKQNRTANGNTLDRENSTTTKHTS
LPPSLQTEVTPEQLMQEMDYCISNCFFSEDLDSFNHLFDLICNKNANVDYKHSDMGATPL
MVAASRGLLSQIEQLLNMGADVNIKATNGWTALDFARSCQHPDAVDLLQASFPLSEVNVF
EGESGESEVFSEDQELDLIMNLLHYICSNTCEGAVLIFVAEYSEILALRYRILYDDQRFA
AHSERFQVFALYSDTQTVDQKTVMGASTPGVRRIILSTNIAESSITISDVVFVIDTGKVK
EISFDSVSHLSVFKKGWISKASALQRKGRAGRCRPGICFHLFSLSTFSNMEEFKASRLLQ
IPLQGLCLQAKLLVPSSCSVADFLSKAPEPPPADAISKAVQRLMVIDAMDQDEELTFLGC
YLADVSIKPHLGKMVLCAVVLKCLDPVLTIACILAYRDPFILPTEGTQRRKALLCRKHFS
SSSFSDHMALLRAFQAWQRARRDGCERSFCERNFLSQATMEMIFDLRVQLLGQLRAIGFV
RPRGSSNIHELNQNSENWAVVKAALVCGMYPNMFYVDQKTLQPLSHTDRKIYFHPTSVLN
LFKEIKPAKSAEILPTSWFIYDEICRGERRSTVRCCSLVTSFTVAIFGGRAMLPGSPLQE
YSIPRPVGLSCPDSQLEDSDSDTEDMAEIKVDKSFSFQANTEAAGLLNKLKQMWQSLFIK
RIRFPSRSYTQREEVILQILVSVLTEEEQRAGLQQPSGIGQRPWPMAVGDFPQTSVKNSE
SSSPQTAAGSDPDREASGLFQAKAYSRDVASLCRGQLSADLWMSCTLTPRSSPNSSPQET
KQGLEADLQEPTRISSWIL
NT seq 3660 nt   +upstreamnt  +downstreamnt
atgagcccaaacacagctcagctgaatgacagtcatgtggaagaagagtttaagatggca
gtggagctttgtttggagaggtttcagtacagtgagcagaaagaacttgagtttccctcc
tgcttcagcggtgctgagagggcctatattcatcgaatggctcagtccttaggttatatt
tctagaagtagagagaggggattggaacgcttcattactgtttggaagaagcagagtgaa
gggaaatcactgaccactgctccaatcacagtctctcacaaatctgtacatttaattgtt
tctctccttgagaaatttcctgtcagatatagggaggatactgatggtcagtttagtcct
gaaaattgcacagtacctgtacagactgacaacagccgggaaaaattcaaaccaacagga
tttttacacaacagtactcccttggtgcccaataagaggagtccgtcagaactggaaagc
tttcgatgctccttgccgatccataaatatcaggatgaaattgtcaatctcataaaaaca
aacaaagtggtgctcgtggttggagagaacggctctgggaaaactacacagattccacag
ttcatcctggacgactgctttaacagaggtgagacctgcaggatgttctgttctcagccc
agacgtctggctgttagttcggtggctgagagggtggcagcagagaggggagagactgtg
ggccagactgtgggctatcatatcagactggaaaacagaatttcacccaagacacttcta
acattttgcacccatggggttttgctgagaacactgatgactggagatgccagcctgaaa
actgtcacacatgtcatcctggatgatgtggatgaccgtgatgatatgacagactttctg
ctcactaagatgcgaactatgcttcagaagatcccaacactgaaactgatcctgtccagt
gcagcagtgaatgtagacctgttacgtcagtactttggcacatgccaagttcttaatgtc
acaggaaggcagtttgaagtaaaggaaatttttctggaggacattctgaagctgacatcc
ttcaaccccccagccatacaaaaacacaaggatgaaaaaatgagaagggagaagcagtca
acatgtttcattgactctactgagggagtaaagtatggtggcattgacagaaaacagaac
aggactgccaatggaaatacactggacagagagaatagcaccaccaccaagcatacaagc
ttaccaccaagcttacagacagaggtgacaccagagcaactgatgcaggagatggactac
tgcatctccaactgtttcttcagtgaagacctggattcttttaatcatctgtttgacctc
atctgtaataaaaatgctaacgtggactacaaacacagtgacatgggagccacacctctg
atggtagcagccagtcgggggctcctcagtcagatagagcagctgctcaatatgggtgct
gatgtcaacatcaaggcaactaatggatggacggctttggattttgccagaagctgccaa
catccagatgcagtggatcttctccaagcctcatttcctttgagcgaggtgaatgttttt
gaaggggagtctggagagtcagaggtttttagtgaagaccaggagttggacctcatcatg
aatcttctccactacatttgctccaacacctgcgagggagcagtgctaatatttgtagcc
gaatactctgagatactggccctaagatatcggattctatatgatgaccaaagatttgct
gcccacagtgagagattccaggtgttcgctttatattcagacacacagactgtggatcag
aagacggtcatgggtgcttcaacgcctggagtcagaagaattattctttctactaacatt
gctgagagcagcatcaccattagtgatgtggtgtttgttattgacacaggaaaagtcaaa
gagatatcttttgacagtgtgagtcatctttcagttttcaagaagggttggatttcaaaa
gccagtgccctgcaaaggaagggaagagccgggcgctgtagaccaggaatctgcttccat
ctctttagtctctccaccttcagcaacatggaagaatttaaggcatctcgactgctgcag
ataccactgcagggactgtgtcttcaggccaaattgctggttccctcgtcctgttcagtg
gctgactttctgtccaaggctcccgagcctcctccagcagatgccatcagtaaagctgtg
caaaggctaatggtgatagatgctatggaccaggatgaagagctgactttcttaggctgt
tacctggctgatgtatccatcaaaccccacctggggaagatggtgctgtgcgctgtggtg
ctcaaatgtctggacccagtgctaaccattgcatgtatactagcctaccgagaccccttc
atccttccgaccgagggaactcagagaagaaaggccctgctctgtcgcaaacatttctct
tccagcagctttagtgatcacatggccctgctgagagcatttcaggcctggcagagggct
cgccgtgatggatgtgagagatcgttttgtgagaggaacttcctgtctcaggccaccatg
gagatgatatttgacctgagagttcagttgctgggacaactgcgtgccattgggtttgtg
cgacctcgaggaagcagcaatatccatgaattaaatcagaactcggagaactgggccgtc
gtgaaggcagctcttgtgtgtggcatgtatccaaacatgttctatgtggaccaaaagacc
ttgcaacctttgagccacacagacagaaaaatctactttcatcccacatcagtcctcaac
ctgttcaaagagatcaagcctgcaaagtctgctgagatcttgcccaccagctggttcata
tatgatgagatttgtcgaggagagaggaggtccaccgtccgctgctgctctttggtgact
tcctttaccgtggccatatttggaggtcgtgccatgttgcctggttctcctctacaggaa
tattctatacccagaccagttggtctgtcttgtccagacagtcagctggaggacagtgac
agtgacacagaggacatggctgaaatcaaagtagacaagagtttctccttccaggctaac
acagaagctgcaggactcttgaacaaactgaagcagatgtggcagagtttatttatcaaa
aggatacgctttccctcaaggtcatatactcaaagagaagaagttatactgcagatcctg
gtgtcggtgttaactgaagaggagcagagagctggtctgcagcagccttctgggattggc
caacggccatggccaatggctgtaggagatttccctcagacctctgtgaaaaactcagag
agcagcagccctcagactgcagctggctctgacccggacagggaagcctcaggtttgttt
caggcgaaagcctacagcagagatgttgcttcactgtgtagaggtcaactctctgctgac
ctgtggatgtcctgcactctgacccccagaagttcccccaatagcagtccacaggagaca
aaacagggactagaagctgacctgcaggaacccacaaggatcagctcctggatcctgtga

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