Cynoglossus semilaevis (tongue sole): 103389488
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Entry
103389488 CDS
T04866
Symbol
rxra
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
KO
K08524
retinoid X receptor alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03320
PPAR signaling pathway
csem04148
Efferocytosis
csem04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103389488 (rxra)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
103389488 (rxra)
03320 PPAR signaling pathway
103389488 (rxra)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csem03000
]
103389488 (rxra)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
csem03310
]
103389488 (rxra)
Transcription factors [BR:
csem03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
103389488 (rxra)
Nuclear receptors [BR:
csem03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
103389488 (rxra)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
103389488
NCBI-ProteinID:
XP_008323126
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Position
14:complement(8900086..8963777)
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AA seq
503 aa
AA seq
DB search
METKPFLSLGFLKPQCSLAPPMDRGRSGEACSCFSGMCPLHQRRLSSDSSGHMTSSPLSS
PTSHRGMHPSLLSPTAMGPSGSLHSPISTLSSPMNGMTSPFSVISSPMGPHSMTSPGMGY
GSSVSPQLNSPMNSVSSTEDIKPPLGLNGVMKVPAQPSGTALSLTKHICAICGDRSSGKH
YGVYSCEGCKGFFKRTVRKDLTYTCRDNKNCVIDKRQRNRCQYCRYQKCLAMGMKREVLL
NAAVQEERQRAKEKNENEVESTTCANEDMPVEKILEAEQAVEPKTTETYITETNLGVPSN
SPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIA
VKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPD
SKGLSNPSEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF
KLIGDTPIDTFLMEMLEAPHQMT
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggagaccaaaccgttcctctcactggggttcctgaagccccagtgctcgctggctccg
cccatggatcgaggtcgttcaggtgaagcctgctcctgcttcagtggcatgtgtcctctg
caccagcgtcgtctgtcctcagactcttcaggtcacatgacctcctcgcctctcagctca
cccacatctcatcgaggaatgcacccatctctactcagcccgactgccatgggtccttct
ggctccctgcactcccccatcagcacgctcagctctcccatgaacggcatgacctcgcca
ttctctgtcatcagctcgcctatggggccgcactccatgacctctcccgggatgggctat
ggatccagcgtcagcccacagctgaactctcccatgaactcagtcagcagcacagaggac
atcaaacctccgctgggtctgaacggcgtgatgaaggttccagcccagccctcaggcacc
gcactgtcgctcaccaagcacatctgtgccatctgtggtgaccgctcctcaggtaaacac
tacggcgtgtacagctgcgagggctgcaaaggtttcttcaaacgcaccgtccgcaaagac
ctgacctacacctgcagagacaacaagaactgtgtcatcgacaaacgccagaggaaccga
tgtcagtactgtcgctaccagaagtgtctggcgatgggcatgaagagagaagtgttgtta
aatgcagccgtccaggaggagcgccagagagccaaagaaaagaacgagaatgaggtggag
tccaccacctgtgccaacgaggacatgccggtggagaagatcctggaggctgagcaggcg
gtggagcccaagaccacggagacctacatcactgagaccaacctgggggtaccgtccaac
tctcccaacgacccagtgaccaacatctgtcaggcagcagacaaacagctcttcactctg
gtggagtgggccaagaggattcctcacttctctgagctgccgctggacgaccaggtcatc
ctgctgcgagcaggttggaatgagcttctcatcgcctcattttctcatcgttccatcgcg
gttaaagatgggatcctgttggccactggtctacacgtgcacaggaacagtgcccacagt
gcaggagtgggggccatctttgacagagttctgacggagctagtgtccaagatgagggac
atgcagatggataagacggagctgggatgtttgagggccatcgtcctcttcaacccagac
tccaaaggtctgtccaaccccagtgaggtagaggctctgagggaaaaggtctacgcctct
ttagaggcctattgtaaacacaaataccctgagcagcctggaaggttcgccaagctgctc
ctgcggttaccagcgctgcgctccatcggcctcaagtgtctggaacatctgttcttcttc
aaactgatcggggacacgcccatcgacaccttcctcatggagatgctggaggcgccgcat
cagatgacgtaa
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