Cynoglossus semilaevis (tongue sole): 103390414
Help
Entry
103390414 CDS
T04866
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X6
KO
K24356
collagen type XXV alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
csem00536
]
103390414 (col25a1)
Glycosaminoglycan binding proteins [BR:
csem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103390414 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
103390414
NCBI-ProteinID:
XP_008324484
LinkDB
All DBs
Position
1:complement(30932017..31061650)
Genome browser
AA seq
696 aa
AA seq
DB search
METAQARGASRCVEKMDKVTPEKRHRCRATVLNIISSLCSVASIAFCVLLSINAADLQNR
VVGLESGNGEHPIVRAPGYSMGDFNSLIQQRVDELLSQRSYENYVKIRTARQASPECNCP
PGPPGKRGRRGRNGEPGPPGPPGPQGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLI
KGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGQPGETGLMGPEGPPGL
KGSLGPPGVPGLDGLKGEMGERGEKGDLGEEGPKGDMGEKGDAGSSAAGIKGEPGEPGRS
GHKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGDHGPPGKGERGEIGPVG
PKGSQGEAGTPGLKGSKGETGDKGDLGHSGPKGPPGQKGDQGVTEIIDYNGNIQEALQKI
TTITVTGPPGPAGPVGPQGVKGDRGMPGLPGLDGERGYKGSKGDMGMPGASGEKGTTGLP
GLPRVNGMKGEKGDLGLPGPQGPSIIGPPGPPGPHGQSGPMGPHGFPGPKGEPGLHGVKG
MRGEQGHKGDRGPLGLPGASGLDGKPGIRGTDGPPGPAGPAGPKGDLGEKGAQGEPGPRG
PYGLPGAPGTPGLDGTQGLMGEKGDVGERGEKGFRGFKGEKGEPGQPGLDGLDAPCQLVQ
YLSFSFTVYSCMPTPPITAEMNPCMTPDHNTSMNAF
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggagactgcgcaggcgagaggagcatcaaggtgcgtggagaaaatggacaaagtaacg
cctgagaagcgacaccgttgtcgcgcaacagtgctgaacatcatctcgtcgctgtgttcc
gtggcttccatcgcgttctgcgttctcctcagcattaacgcagctgatcttcagaaccgg
gttgtgggtttggagagtgggaatggcgagcacccgattgtccgagccccgggttactcc
atgggtgattttaactcactgatccaacaaagagtggatgagctgctctcacagcgctcc
tatgagaattacgtcaagatccgcactgccagacaggcatcacctgagtgcaactgcccc
ccaggacctccgggaaagcgaggaagacgaggccgtaacggagaacctggacctcctggc
cctccaggtccacaaggtgaaaagggggatcaaggcgaccagggaccacggatggtcttc
cctaagatcaatcatggctttctttccgctgaccagcagctcattaagcgccggctcatt
aagggagatcaaggacaggcgggaccacctgggcctccaggtccaccgggtcccccgggg
ccaagaggacctcctggggacactggcaaagatgggcctagaggtgtgcctggtttacca
ggtgatccagggcagcctggtgaaacaggacttatggggcctgaggggccaccagggcta
aagggttcccttgggcctcctggcgttccaggtcttgatggactgaagggtgaaatggga
gagcgaggtgaaaagggtgacttgggcgaagaggggccgaaaggtgatatgggagagaag
ggagacgcaggctcctccgcagctggcattaagggtgaacctggagagcctggacgaagt
ggacataagggagagccaggacttccagggctgcctggactcccggggataaagggtgag
cctgggtttctaggcccccagggagaaccaggacttccaggcctccccggtaccaagggt
gaaaggggtgaccatggcccaccaggaaagggtgaaaggggggaaattggacctgttgga
ccaaagggttcacagggagaggctggaacccctggtctcaaagggtcaaagggcgagaca
ggagataaaggtgatttgggacacagtggcccgaagggacctcctgggcagaaaggagac
caaggagttactgaaatcattgattacaatggaaacattcaggaggctctacagaagatt
accactattacagtcacgggtcctcctgggcctgcagggccagtggggccacagggtgta
aagggggatcgtggcatgcctggtcttcctggactcgatggagagagaggttacaaaggt
tcaaaaggagacatggggatgcctggggcttctggggaaaagggcactactggtttaccg
ggtctacctcgcgtcaatggaatgaaaggagaaaaaggagatctaggtcttcctggtcct
cagggtccctccatcataggtcctccagggccaccaggtcctcatgggcaatcaggacct
atgggaccccacggttttcctggaccaaagggagaacctggactacatggggtgaagggt
atgcgaggggaacaagggcacaaaggcgatcgtggaccgttgggtctccccggagcctcc
ggcttggacggcaagcctgggattaggggcaccgatggtcctccaggtccagctggtcct
gctgggccaaagggtgacctaggtgagaagggtgcccaaggtgagccaggaccaagagga
ccctatggacttcctggtgctccgggaacaccaggcctggatgggacacaaggcttaatg
ggagaaaaaggcgacgttggtgaaagaggagaaaagggtttccggggatttaagggtgaa
aagggggaaccagggcaacccggtctggacgggctggatgccccatgccaattggtacag
tatttatctttttccttcaccgtgtactcatgcatgcctacacctccaatcactgctgaa
atgaatccatgcatgactccagaccacaacacgagcatgaatgcattttag
DBGET
integrated database retrieval system
