KEGG   Cynoglossus semilaevis (tongue sole): 103392140
Entry
103392140         CDS       T04866                                 
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
csem  Cynoglossus semilaevis (tongue sole)
Pathway
csem04510  Focal adhesion
csem04512  ECM-receptor interaction
csem04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:csem00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    103392140
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    103392140
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    103392140
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:csem04147]
    103392140
   00536 Glycosaminoglycan binding proteins [BR:csem00536]
    103392140
Exosome [BR:csem04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   103392140
Glycosaminoglycan binding proteins [BR:csem00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   103392140
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 103392140
NCBI-ProteinID: XP_008326908
LinkDB
Position
16:10793865..10828464
AA seq 1638 aa
MILPSATLLLLAVLSSSLDLTEAEGCGASCGKCDCSGVKGTKGERGLPGLQGNMGFPGMQ
GPEGPSGPIGFKGDKGDSGAPGLKGVRGPHGQPGFPGTPGLPGINGNDGPSGLPGIPGCN
GTKGDRGKDGAAGFPGLQGPPGIPGINGMKGDPGGVIGIIPLKGDRGFPGSPGFPGGTGP
VGPVGPQGPRGYPGPKGDPGPPGLPGEEGDKLSFESEKGEKGDAGFRGPPGPPGPSLGVD
GSTTLFVPGRPGDRGLTGDKGEKGYCISHLNGIKGEIGQPGQRGKPGKDGDAGPKGDKGF
PGAPGYPGLTGEKGERGPPGYGTGAVGSPGPPGRQGLQGEKGFPGPTGETGPPGLNLEGP
RGEKGLKGEPGVKGDMGVEGASLAGPPGQPGVTGPPGPPGLPIDKECDIEKGAPGPPGPP
GLQGEVGQKGDQGDTCVQCEAFGPPGLPGAAGEKGELGPPGLVGGKGEKGDPGSPGQSGL
PGNPGIPGLVGAPGAVGEPGDIFVAPGLKGDAGLPGLDGSPGLPGLDGLPGRDGFPGAPG
IKGEPAKEGIKGERGPDGDPGLIGVPGERGPPGVPGVGQPGQPGDKGNPGRPGSPGEPGI
PGVKGEPGVGMSSPGPQGIPGPRGETGRPGFPGDRGLPGESGLPGFPGQKGEPGASGIGF
PGPTGPKGTSGIPGAPGLPGEPGKQGQDGNAGQPGSPGQKGEPGRGLPGPKGLQGVPGLP
GFQGDRGETGXXXIPGREGQTGPPGPQGIKGDVGRPGPAGQTGLPGPPGKGLPGVPGPQG
PPGEPGPVGGIGVKGDKGYPGVPGLDMPGPQGEKGSQGFPGPPGPKGYQGSPGLPGRDGV
IGTQGSKGEMGIMGTPGVPGFPGPPGTPGNPGLRGDPGIIGLRGEVGQTGDKGERGEPGI
QGPPGNMTEVEMEHMKGEKGQIGDKGDAGYTGIKGHPGLPGNPGMPGKDGEPGLPGQPGE
KGDPGFPGDPGYTGNPGQKGSVGEMGIPGPVGPKGSRGDTGTPGHRGFKGTDGVKGEIGA
PGDPGIGLPGFPGEKGQPGQPGFPGVPGERGDKGQEGMPGKPGLQGPKGDKGLFGFPGQP
GIPGEKGTPGLPGFAGEPGRDGRQGENGLQGPPGTPGEKGEPGVDGIPGSSGERGDPGLP
GRGFPGPPGTFGSKGEKGSSGIPGTPGHPGVPGIKGDKGLPGPNGPHGEPGERGLPGLSL
EGPKGERGLTGQPGEQGTPGGPGPAGVPGRHGEKGEKGDLGLPGFPGETGQKGDPGTPGF
HGQPGLPGLDGQKGERGLQGVPGFPGTQGNIGDQGFKGELGDRGFPGEKGNVGPPGPPGP
HTIIKGDPGFQGIQGFPGPQGPPGFPGAKGQQGITGFSGPKGEDGLPGYPGQPGAKGEPG
PQGPQGPRGHPGPQGPDGVPGQLGPPGPSSMDHGFLVTRHSQNVEVPFCPEGTSLIYDGY
SLLYVQGNERAHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPM
SMAPITGESIKPFISRCAVCEAPAMVIAVHSQSIMIPPCPHGWDSLWIGYSFVMHTSSGA
EGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIESITSSRKPVPTTLK
AGSLRTHISRCQVCMKRT
NT seq 4917 nt   +upstreamnt  +downstreamnt
atgatcttaccgtccgctactctcttactgctggcggttctgtcctccagcctggacctg
acagaggctgagggttgtggagcatcatgtgggaaatgtgactgcagtggcgtaaaagga
accaagggtgaacgtgggcttcctggactccaaggtaatatgggctttccagggatgcag
ggacctgaggggccttctgggccaatcggcttcaagggagataaaggtgattctggggct
cctggactgaaaggtgtgcgaggtcctcatggtcagcctggtttcccaggaactccaggt
ctaccaggcatcaatggaaacgacggcccatctggtctaccaggtatcccaggatgcaac
gggactaaaggagatagaggaaaagatggagctgctggttttcctggtcttcaaggacct
cctggtatcccaggaattaatggaatgaagggtgaccctggtggtgttattggtatcatt
cctttaaaaggagacagaggattccctggctcacctggatttcctggaggaaccggacct
gtaggacctgtcggccctcaaggtccccgtggttatccagggcctaaaggtgaccctggt
cctcctggacttcctggagaggagggggacaagttgtcttttgagagtgaaaagggagaa
aagggtgacgcaggatttcgaggcccacctggtcctccaggaccgtcactgggagtcgat
ggaagtacaacactgtttgtacctggacgaccgggagacagaggactcacaggagataaa
ggagagaaaggctattgcatttctcatttaaacggtattaaaggtgaaattggtcagcct
ggccaaaggggtaaaccaggcaaagatggagatgctggaccaaaaggagataaaggtttt
ccaggtgctccaggatatccaggtcttacgggtgaaaaaggagagagaggaccaccaggt
tacggcactggtgccgttggttcacctggtcctcccggtcgtcaagggttacaaggagaa
aaaggttttccagggcctacgggagaaacaggtccaccaggactaaacttggaagggccc
cgaggagagaagggtttgaagggagaacctggggttaaaggagacatgggtgtagaagga
gcctcactggcaggacctcccggacaaccaggagttactggacctcctggcccaccagga
ctcccaattgacaaagaatgtgacattgagaaaggggctcctggcccacctggacctcct
gggttacaaggagaagtgggacagaaaggtgaccaaggagatacatgcgttcagtgtgaa
gcttttggcccacctggattacccggggctgcgggggaaaagggcgagctcggacctcct
gggttggttggagggaagggagaaaagggtgaccctgggtctcctggacaatctggacta
cctggcaacccaggcatacctgggttggtgggagctcctggtgctgttggtgaacctggt
gacatttttgtcgcacctggtctaaagggagacgcaggtctacctggtcttgatggatct
ccaggattgccaggattggatgggctgccaggaagagatggctttccaggtgcacctgga
attaaaggagaacctgccaaagaaggcattaaaggtgagagaggacctgacggtgaccct
ggtcttattggtgtcccaggagagagaggaccccctggggtgccgggcgtcggccaacca
ggacagcctggggataagggtaacccaggaagaccaggaagccctggagagcctggaatt
ccaggtgttaaaggtgagccaggtgtaggtatgagttctccaggaccccagggtattcca
ggaccaaggggagaaactggcagacctgggtttccaggtgacaggggcttgcctggagaa
tctgggttgccaggttttcctggacagaagggtgaaccaggtgcatcaggaattggcttt
cctgggccaactggtccaaaaggtaccagtggaattccaggagctccaggattaccagga
gagcctggaaaacaagggcaagatggaaatgcaggacagccaggttcacctggacagaaa
ggtgaaccgggacgcgggcttccaggtcctaaaggtttgcaaggtgttcctggactccct
ggtttccagggggacaggggtgaaacaggnnnnnnnnnnattcctggaagagagggtcaa
acaggaccaccaggtcctcaaggaatcaaaggtgatgtgggacgtccaggacctgctgga
caaacgggtctaccaggtccaccaggaaaaggcttacctggcgttcctgggccccaagga
ccccctggagagcctggacctgttggagggataggtgtgaagggagacaagggttatcct
ggtgttcctggactggacatgccagggcctcagggagaaaagggaagtcaaggatttcca
ggacctccaggccctaaaggatatcaaggttctcccggattaccaggcagggatggagtg
attggaactcaaggttctaaaggtgaaatgggaatcatgggaacaccaggtgttccagga
ttccctggtccacctggtacacctggaaatccaggtctgagaggtgatcctggtatcatt
ggactaaggggtgaggttggacagactggagataaaggagaaagaggagaacccggtatt
caggggcctccagggaacatgactgaagtggaaatggagcacatgaagggagagaaagga
caaattggagacaaaggtgacgccgggtatactggaataaagggccaccccggacttcct
gggaaccctggaatgcctggcaaagatggagaaccgggattacctggacagccaggtgag
aaaggagatccaggttttccaggagaccctggttacacggggaatcctggacagaaaggc
agtgtcggagaaatgggaataccaggtccggttggtccgaaaggctctagaggagataca
ggaacaccgggacaccgcggttttaaaggaacagatggggtgaagggagaaataggtgca
cctggtgatccaggtattggtctccctggattcccaggagaaaagggccagccaggtcag
ccaggattccctggagtacctggagaaaggggagacaaaggccaagagggaatgcccgga
aaaccagggctccaaggacccaaaggagataaaggactttttggatttccaggtcagcca
ggtataccaggtgagaagggtactcctggacttccaggctttgcaggagaacccggacgt
gatggtcgacaaggtgaaaatggccttcagggaccgcctggaactcctggagagaagggt
gaacctggagtggatggcatccctggatcttctggagagagaggagacccaggtttacct
ggccggggtttccctgggcctcctggaacttttggtagtaaaggtgaaaagggtagctct
ggcatccctggcactccaggtcacccaggtgttcctggtatcaaaggagataagggtctt
ccaggcccaaatggaccacatggtgagccaggcgagaggggactcccaggtctttctcta
gagggccccaaaggagagaggggattaacaggacaacctggagaacaaggaaccccagga
ggaccaggtcctgctggtgtaccaggccgtcatggagaaaagggcgagaaaggagatctg
ggtctgcctggtttcccgggagagacgggacaaaagggtgaccctggaactccaggattc
cacggacaacctggtcttccaggtctagatggacaaaaaggagaaagaggcttacaaggt
gtcccaggatttccaggtacacagggtaacattggagaccagggcttcaaaggagagctt
ggagacagaggattcccaggagaaaagggtaatgtaggccctccaggacctcctgggccc
cacaccataataaaaggagatcctggatttcaaggaattcaaggctttccagggccacaa
ggtccacctggatttccaggagcaaaaggacagcaaggtatcactggcttctcaggacca
aaaggtgaagatggacttcctggatatcctggtcaacctggagccaaaggagagcctggt
ccacaagggccacagggaccaagaggacatcctggtccacaaggacctgatggtgtccca
ggtcaactgggcccaccaggcccatcgtccatggaccacggattcctggtgacgcgtcac
agccaaaatgtggaggttccattttgccctgagggaacgtcgctgatttatgatggttac
tccctgctctatgtacaaggcaacgaacgagcacatgggcaggacttaggtacagcaggc
agttgtttaaggaagttcagccccatgcctttcctgttctgtaacatcaacaacgtctgc
aacttcgcttctcgtaatgactactcctactggctcacctcccctgagcccatgccaatg
agcatggcaccaatcaccggtgaaagcatcaaacccttcattagtcggtgtgctgtgtgt
gaagccccagctatggtgattgcagtgcacagtcagtccatcatgattcctccctgccca
catggctgggactctctgtggattggttactcctttgtcatgcacaccagctctggagct
gagggttcaggtcaggctctggcctctcccggttcctgtctggaggaattccgcagcgct
ccattcattgaatgtcacggccggggaacatgcaactattacgctaactcttacagcttc
tggctcgccaccattgaatccattacttcttccaggaaacctgttccaacaacacttaaa
gctggcagcctcagaacacacataagccgctgtcaggtgtgcatgaagcggacataa

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