Cynoglossus semilaevis (tongue sole): 103392140
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Entry
103392140 CDS
T04866
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04510
Focal adhesion
csem04512
ECM-receptor interaction
csem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103392140
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103392140
09142 Cell motility
04820 Cytoskeleton in muscle cells
103392140
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csem04147
]
103392140
00536 Glycosaminoglycan binding proteins [BR:
csem00536
]
103392140
Exosome [BR:
csem04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103392140
Glycosaminoglycan binding proteins [BR:
csem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103392140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103392140
NCBI-ProteinID:
XP_008326908
LinkDB
All DBs
Position
16:10793865..10828464
Genome browser
AA seq
1638 aa
AA seq
DB search
MILPSATLLLLAVLSSSLDLTEAEGCGASCGKCDCSGVKGTKGERGLPGLQGNMGFPGMQ
GPEGPSGPIGFKGDKGDSGAPGLKGVRGPHGQPGFPGTPGLPGINGNDGPSGLPGIPGCN
GTKGDRGKDGAAGFPGLQGPPGIPGINGMKGDPGGVIGIIPLKGDRGFPGSPGFPGGTGP
VGPVGPQGPRGYPGPKGDPGPPGLPGEEGDKLSFESEKGEKGDAGFRGPPGPPGPSLGVD
GSTTLFVPGRPGDRGLTGDKGEKGYCISHLNGIKGEIGQPGQRGKPGKDGDAGPKGDKGF
PGAPGYPGLTGEKGERGPPGYGTGAVGSPGPPGRQGLQGEKGFPGPTGETGPPGLNLEGP
RGEKGLKGEPGVKGDMGVEGASLAGPPGQPGVTGPPGPPGLPIDKECDIEKGAPGPPGPP
GLQGEVGQKGDQGDTCVQCEAFGPPGLPGAAGEKGELGPPGLVGGKGEKGDPGSPGQSGL
PGNPGIPGLVGAPGAVGEPGDIFVAPGLKGDAGLPGLDGSPGLPGLDGLPGRDGFPGAPG
IKGEPAKEGIKGERGPDGDPGLIGVPGERGPPGVPGVGQPGQPGDKGNPGRPGSPGEPGI
PGVKGEPGVGMSSPGPQGIPGPRGETGRPGFPGDRGLPGESGLPGFPGQKGEPGASGIGF
PGPTGPKGTSGIPGAPGLPGEPGKQGQDGNAGQPGSPGQKGEPGRGLPGPKGLQGVPGLP
GFQGDRGETGXXXIPGREGQTGPPGPQGIKGDVGRPGPAGQTGLPGPPGKGLPGVPGPQG
PPGEPGPVGGIGVKGDKGYPGVPGLDMPGPQGEKGSQGFPGPPGPKGYQGSPGLPGRDGV
IGTQGSKGEMGIMGTPGVPGFPGPPGTPGNPGLRGDPGIIGLRGEVGQTGDKGERGEPGI
QGPPGNMTEVEMEHMKGEKGQIGDKGDAGYTGIKGHPGLPGNPGMPGKDGEPGLPGQPGE
KGDPGFPGDPGYTGNPGQKGSVGEMGIPGPVGPKGSRGDTGTPGHRGFKGTDGVKGEIGA
PGDPGIGLPGFPGEKGQPGQPGFPGVPGERGDKGQEGMPGKPGLQGPKGDKGLFGFPGQP
GIPGEKGTPGLPGFAGEPGRDGRQGENGLQGPPGTPGEKGEPGVDGIPGSSGERGDPGLP
GRGFPGPPGTFGSKGEKGSSGIPGTPGHPGVPGIKGDKGLPGPNGPHGEPGERGLPGLSL
EGPKGERGLTGQPGEQGTPGGPGPAGVPGRHGEKGEKGDLGLPGFPGETGQKGDPGTPGF
HGQPGLPGLDGQKGERGLQGVPGFPGTQGNIGDQGFKGELGDRGFPGEKGNVGPPGPPGP
HTIIKGDPGFQGIQGFPGPQGPPGFPGAKGQQGITGFSGPKGEDGLPGYPGQPGAKGEPG
PQGPQGPRGHPGPQGPDGVPGQLGPPGPSSMDHGFLVTRHSQNVEVPFCPEGTSLIYDGY
SLLYVQGNERAHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPM
SMAPITGESIKPFISRCAVCEAPAMVIAVHSQSIMIPPCPHGWDSLWIGYSFVMHTSSGA
EGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIESITSSRKPVPTTLK
AGSLRTHISRCQVCMKRT
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atgatcttaccgtccgctactctcttactgctggcggttctgtcctccagcctggacctg
acagaggctgagggttgtggagcatcatgtgggaaatgtgactgcagtggcgtaaaagga
accaagggtgaacgtgggcttcctggactccaaggtaatatgggctttccagggatgcag
ggacctgaggggccttctgggccaatcggcttcaagggagataaaggtgattctggggct
cctggactgaaaggtgtgcgaggtcctcatggtcagcctggtttcccaggaactccaggt
ctaccaggcatcaatggaaacgacggcccatctggtctaccaggtatcccaggatgcaac
gggactaaaggagatagaggaaaagatggagctgctggttttcctggtcttcaaggacct
cctggtatcccaggaattaatggaatgaagggtgaccctggtggtgttattggtatcatt
cctttaaaaggagacagaggattccctggctcacctggatttcctggaggaaccggacct
gtaggacctgtcggccctcaaggtccccgtggttatccagggcctaaaggtgaccctggt
cctcctggacttcctggagaggagggggacaagttgtcttttgagagtgaaaagggagaa
aagggtgacgcaggatttcgaggcccacctggtcctccaggaccgtcactgggagtcgat
ggaagtacaacactgtttgtacctggacgaccgggagacagaggactcacaggagataaa
ggagagaaaggctattgcatttctcatttaaacggtattaaaggtgaaattggtcagcct
ggccaaaggggtaaaccaggcaaagatggagatgctggaccaaaaggagataaaggtttt
ccaggtgctccaggatatccaggtcttacgggtgaaaaaggagagagaggaccaccaggt
tacggcactggtgccgttggttcacctggtcctcccggtcgtcaagggttacaaggagaa
aaaggttttccagggcctacgggagaaacaggtccaccaggactaaacttggaagggccc
cgaggagagaagggtttgaagggagaacctggggttaaaggagacatgggtgtagaagga
gcctcactggcaggacctcccggacaaccaggagttactggacctcctggcccaccagga
ctcccaattgacaaagaatgtgacattgagaaaggggctcctggcccacctggacctcct
gggttacaaggagaagtgggacagaaaggtgaccaaggagatacatgcgttcagtgtgaa
gcttttggcccacctggattacccggggctgcgggggaaaagggcgagctcggacctcct
gggttggttggagggaagggagaaaagggtgaccctgggtctcctggacaatctggacta
cctggcaacccaggcatacctgggttggtgggagctcctggtgctgttggtgaacctggt
gacatttttgtcgcacctggtctaaagggagacgcaggtctacctggtcttgatggatct
ccaggattgccaggattggatgggctgccaggaagagatggctttccaggtgcacctgga
attaaaggagaacctgccaaagaaggcattaaaggtgagagaggacctgacggtgaccct
ggtcttattggtgtcccaggagagagaggaccccctggggtgccgggcgtcggccaacca
ggacagcctggggataagggtaacccaggaagaccaggaagccctggagagcctggaatt
ccaggtgttaaaggtgagccaggtgtaggtatgagttctccaggaccccagggtattcca
ggaccaaggggagaaactggcagacctgggtttccaggtgacaggggcttgcctggagaa
tctgggttgccaggttttcctggacagaagggtgaaccaggtgcatcaggaattggcttt
cctgggccaactggtccaaaaggtaccagtggaattccaggagctccaggattaccagga
gagcctggaaaacaagggcaagatggaaatgcaggacagccaggttcacctggacagaaa
ggtgaaccgggacgcgggcttccaggtcctaaaggtttgcaaggtgttcctggactccct
ggtttccagggggacaggggtgaaacaggnnnnnnnnnnattcctggaagagagggtcaa
acaggaccaccaggtcctcaaggaatcaaaggtgatgtgggacgtccaggacctgctgga
caaacgggtctaccaggtccaccaggaaaaggcttacctggcgttcctgggccccaagga
ccccctggagagcctggacctgttggagggataggtgtgaagggagacaagggttatcct
ggtgttcctggactggacatgccagggcctcagggagaaaagggaagtcaaggatttcca
ggacctccaggccctaaaggatatcaaggttctcccggattaccaggcagggatggagtg
attggaactcaaggttctaaaggtgaaatgggaatcatgggaacaccaggtgttccagga
ttccctggtccacctggtacacctggaaatccaggtctgagaggtgatcctggtatcatt
ggactaaggggtgaggttggacagactggagataaaggagaaagaggagaacccggtatt
caggggcctccagggaacatgactgaagtggaaatggagcacatgaagggagagaaagga
caaattggagacaaaggtgacgccgggtatactggaataaagggccaccccggacttcct
gggaaccctggaatgcctggcaaagatggagaaccgggattacctggacagccaggtgag
aaaggagatccaggttttccaggagaccctggttacacggggaatcctggacagaaaggc
agtgtcggagaaatgggaataccaggtccggttggtccgaaaggctctagaggagataca
ggaacaccgggacaccgcggttttaaaggaacagatggggtgaagggagaaataggtgca
cctggtgatccaggtattggtctccctggattcccaggagaaaagggccagccaggtcag
ccaggattccctggagtacctggagaaaggggagacaaaggccaagagggaatgcccgga
aaaccagggctccaaggacccaaaggagataaaggactttttggatttccaggtcagcca
ggtataccaggtgagaagggtactcctggacttccaggctttgcaggagaacccggacgt
gatggtcgacaaggtgaaaatggccttcagggaccgcctggaactcctggagagaagggt
gaacctggagtggatggcatccctggatcttctggagagagaggagacccaggtttacct
ggccggggtttccctgggcctcctggaacttttggtagtaaaggtgaaaagggtagctct
ggcatccctggcactccaggtcacccaggtgttcctggtatcaaaggagataagggtctt
ccaggcccaaatggaccacatggtgagccaggcgagaggggactcccaggtctttctcta
gagggccccaaaggagagaggggattaacaggacaacctggagaacaaggaaccccagga
ggaccaggtcctgctggtgtaccaggccgtcatggagaaaagggcgagaaaggagatctg
ggtctgcctggtttcccgggagagacgggacaaaagggtgaccctggaactccaggattc
cacggacaacctggtcttccaggtctagatggacaaaaaggagaaagaggcttacaaggt
gtcccaggatttccaggtacacagggtaacattggagaccagggcttcaaaggagagctt
ggagacagaggattcccaggagaaaagggtaatgtaggccctccaggacctcctgggccc
cacaccataataaaaggagatcctggatttcaaggaattcaaggctttccagggccacaa
ggtccacctggatttccaggagcaaaaggacagcaaggtatcactggcttctcaggacca
aaaggtgaagatggacttcctggatatcctggtcaacctggagccaaaggagagcctggt
ccacaagggccacagggaccaagaggacatcctggtccacaaggacctgatggtgtccca
ggtcaactgggcccaccaggcccatcgtccatggaccacggattcctggtgacgcgtcac
agccaaaatgtggaggttccattttgccctgagggaacgtcgctgatttatgatggttac
tccctgctctatgtacaaggcaacgaacgagcacatgggcaggacttaggtacagcaggc
agttgtttaaggaagttcagccccatgcctttcctgttctgtaacatcaacaacgtctgc
aacttcgcttctcgtaatgactactcctactggctcacctcccctgagcccatgccaatg
agcatggcaccaatcaccggtgaaagcatcaaacccttcattagtcggtgtgctgtgtgt
gaagccccagctatggtgattgcagtgcacagtcagtccatcatgattcctccctgccca
catggctgggactctctgtggattggttactcctttgtcatgcacaccagctctggagct
gagggttcaggtcaggctctggcctctcccggttcctgtctggaggaattccgcagcgct
ccattcattgaatgtcacggccggggaacatgcaactattacgctaactcttacagcttc
tggctcgccaccattgaatccattacttcttccaggaaacctgttccaacaacacttaaa
gctggcagcctcagaacacacataagccgctgtcaggtgtgcatgaagcggacataa
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