KEGG   Cynoglossus semilaevis (tongue sole): 103392158
Entry
103392158         CDS       T04866                                 
Symbol
ifih1
Name
(RefSeq) LOW QUALITY PROTEIN: interferon-induced helicase C domain-containing protein 1
  KO
K12647  interferon-induced helicase C domain-containing protein 1 [EC:5.6.2.6]
Organism
csem  Cynoglossus semilaevis (tongue sole)
Pathway
csem04622  RIG-I-like receptor signaling pathway
csem05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:csem00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    103392158 (ifih1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    103392158 (ifih1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:csem04054]
    103392158 (ifih1)
Enzymes [BR:csem01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103392158 (ifih1)
Pattern recognition receptors [BR:csem04054]
 Cytoplasmic pattern recognition receptors
  RIG-I-like receptors
   103392158 (ifih1)
SSDB
Motif
Pfam: CARD_2 RIG-I_C-RD RIG-I_C Helicase_C DEAD ResIII CARD SWI2_SNF2 AAA_22 Yippee-Mis18 C1_4 Zn_ribbon_TFIIS
Other DBs
NCBI-GeneID: 103392158
NCBI-ProteinID: XP_008326929
LinkDB
Position
16:11973118..11984417
AA seq 961 aa
MASGTDETRENLIEDLRARLKVCIVVDRLLDQLQFIPVDTKELIRQRARTDGNIVAADLL
IDAVIRKHPAEGWXFLDGLENSGCKHAADYLQDKRPDPAEEEDNDQYVRLIELLSPSLVE
MKTQEVYVHCLSKELITREDSEIIRTDIANRGPRSGARELLRCIVRGQHGWFSQFLDILR
ETEHHELYELTGGSPDSGKQDGPKEGKAGTEKISFAADESQDLYRGADVLSKELPNSHKP
PLTDGAEPAAAAGGPESADISLRDYQMDVARPALEGKNIIVCLPTGSGKTRVAVYITKKH
LDSRRAEGMSGKVVVLVNKIPLVEQHYSAEFLPLLKSTYKVERVSGDCQLKISFTEIIKK
NDVVICTAQILENSLELSNKGEDEGVNLSDLSLLVIDECHHTQKGDVYNSIMMRYLRKKH
TNIRKKKEGKEPVPLPQILSLTASPGVGKATKTKQAEEYILQICANLDASRIMTATPESL
KKEQRKLVLKIEDRKEDPFGDVIKNIMNSIHTHAQLTPSCDLGSQNYEQWIVETERKAAM
EEDHKVQACAEHLRHYNEGLNLSNTIRMCDALVFLNEFHVEEIRKKTTPNDDGQTIQITE
TERFLFHLFKENKEELEKLAKNQQYENDSLCNLRHSILREFSTREKARGIIFTKTRRSTI
ALSQWIQENPKFADIGVKASYIIGGGGQSVVKPMTSTERSAMLKKFDKGDINLLVATSVL
EEGLDIPDCNFVIRYGLVTNEISMIQAKGRGRADDSSYTVVEVKNSCVTEKEHVNEHRLI
LMEKAIKNIKALDPKEYDRQIRDFQAQALMEEKVKKIKKKQKSMKNEKPSQVMFSCRGCS
TQVCTGEDIQVIENAHKVNVTTQFSELYVKRENTSLQERRLDFESIAFIACKTCGRSWGT
MMNYRSIECPCLLVKNFVVTLNGKKIPNCTRWADLPVKFPSFDYSEYAMRLAEGSDDEDT
E
NT seq 2886 nt   +upstreamnt  +downstreamnt
atggcatctggtactgatgaaacaagggagaacctcattgaagacttgagagccagactg
aaggtgtgcattgtggtcgaccggctcctggatcagttacagtttatcccagttgacaca
aaggagctgattcgccaaagagcgaggacagatggtaatatagtagctgcggatctcctc
attgacgcggtcattaggaaacacccggccgaagggtggngattcctggatggactggaa
aactcaggttgtaaacatgcagcggactatttgcaggataaacgcccggatcccgcagaa
gaggaagataatgatcagtatgtccgacttattgagttactgtccccgagtcttgtggaa
atgaagacccaagaggtgtatgttcattgtctttcaaaagagctgatcacgagagaagac
tcagagattattagaacagatatagcaaacagaggaccgaggagtggcgcccgtgaactt
ctgaggtgcatcgtgaggggtcaacatgggtggttttcacagttcctcgacattttgaga
gaaaccgagcaccatgagctgtatgagctcactggagggtcacctgactctggcaagcaa
gatggacccaaagaaggcaaagccggcacagagaagatttcattcgcagctgatgagagc
caagatctgtatagaggagcagatgttttatccaaagaactgccaaatagccacaagccc
ccactcacagatggagccgagccagcggctgcagccggaggcccggagagtgcagatatt
agtcttcgggattatcagatggacgtcgcaagacctgccttagaggggaaaaacatcatc
gtatgcctcccgacaggaagtggtaaaaccagagtggcagtttatattaccaaaaaacat
ctggacagcaggagggcagaggggatgtctggaaaggttgtcgtcctagtgaacaagatt
cctctggtggagcagcattattccgctgagttcctgccgttactgaagtccacatataaa
gtggagagagtcagcggagactgccagctgaaaatctcttttacagagatcattaagaaa
aacgacgtcgtcatttgcacagcccagatcctggaaaactccctggaactgtcaaacaaa
ggagaagacgaaggcgtgaacttaagcgatctgagtctgcttgtaatagacgagtgtcat
cacactcagaagggcgacgtctacaacagcattatgatgcgctacctgcggaagaagcac
accaacatacggaagaagaaggagggcaaagaacccgtgcccctgcctcagatactgagt
ctgaccgcttcacccggggtcgggaaagcaaccaagacaaagcaggcagaggagtacatc
ctgcagatctgtgcaaacttagatgcttccagaataatgacggcgacaccagagagtctt
aaaaaggagcagagaaagttggttttgaagattgaagatagaaaagaggacccgtttggt
gatgtcattaaaaacatcatgaacagcattcatactcatgcccagctgacccccagctgt
gaccttggttctcagaattatgaacaatggattgttgaaactgagagaaaagctgctatg
gaggaagatcacaaagtccaggcttgtgcagaacaccttcgtcattacaacgagggcctg
aacctcagcaacaccatacgcatgtgcgatgctctggtgtttctgaatgaattccatgtg
gaagagattaggaagaaaacaactcctaatgacgatgggcagaccatacagatcacagag
accgaaaggttcctcttccatttgtttaaagagaacaaggaagagttggagaagttggcg
aagaatcagcagtatgaaaatgacagcctttgtaacctaaggcactcaattctgcgagag
ttcagcaccagggagaaggccagaggaatcattttcactaaaacacgccgcagtaccatt
gctctcagccagtggattcaggaaaaccccaagtttgccgacattggtgtgaaggcctca
tatatcattggaggaggaggccagagtgttgttaaaccaatgacctccactgagaggtca
gccatgttgaagaagttcgacaaaggtgacataaacctgctggttgctacgtccgtacta
gaggaaggtctggatataccagactgtaattttgttatccggtacggccttgtcaccaat
gaaatctctatgattcaggctaaaggccgaggaagagctgacgacagcagttacactgtg
gtggaggtaaaaaactcctgtgtgactgaaaaggaacatgtgaatgaacaccgcctgatc
ttgatggagaaagctatcaaaaatataaaagccttagatccaaaggaatatgacaggcag
atcagagactttcaggctcaagcattaatggaggagaaggttaagaagataaagaagaaa
cagaaaagcatgaagaacgagaaaccatctcaggtgatgttcagctgtcgaggctgcagc
acccaggtctgcaccggtgaagacatccaggtcatcgaaaatgcacacaaagtcaatgta
acaacgcagtttagtgaactctacgtaaaaagagaaaacacttctttgcaagaaagacgt
cttgattttgagagtattgccttcatagcctgcaagacctgcgggaggagttggggtaca
atgatgaactatcgctcaatcgagtgtccctgcctccttgtgaaaaactttgttgtaacg
ttgaatggaaagaagattcccaactgcaccaggtgggccgaccttcctgtcaaatttccc
tccttcgactacagcgaatatgcaatgaggctggccgagggctcggatgatgaagacaca
gaatga

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