Cynoglossus semilaevis (tongue sole): 103392158
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Entry
103392158 CDS
T04866
Symbol
ifih1
Name
(RefSeq) LOW QUALITY PROTEIN: interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04622
RIG-I-like receptor signaling pathway
csem05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
103392158 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
103392158 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
csem04054
]
103392158 (ifih1)
Enzymes [BR:
csem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103392158 (ifih1)
Pattern recognition receptors [BR:
csem04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
103392158 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
Helicase_C
DEAD
ResIII
CARD
SWI2_SNF2
AAA_22
Yippee-Mis18
C1_4
Zn_ribbon_TFIIS
Motif
Other DBs
NCBI-GeneID:
103392158
NCBI-ProteinID:
XP_008326929
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All DBs
Position
16:11973118..11984417
Genome browser
AA seq
961 aa
AA seq
DB search
MASGTDETRENLIEDLRARLKVCIVVDRLLDQLQFIPVDTKELIRQRARTDGNIVAADLL
IDAVIRKHPAEGWXFLDGLENSGCKHAADYLQDKRPDPAEEEDNDQYVRLIELLSPSLVE
MKTQEVYVHCLSKELITREDSEIIRTDIANRGPRSGARELLRCIVRGQHGWFSQFLDILR
ETEHHELYELTGGSPDSGKQDGPKEGKAGTEKISFAADESQDLYRGADVLSKELPNSHKP
PLTDGAEPAAAAGGPESADISLRDYQMDVARPALEGKNIIVCLPTGSGKTRVAVYITKKH
LDSRRAEGMSGKVVVLVNKIPLVEQHYSAEFLPLLKSTYKVERVSGDCQLKISFTEIIKK
NDVVICTAQILENSLELSNKGEDEGVNLSDLSLLVIDECHHTQKGDVYNSIMMRYLRKKH
TNIRKKKEGKEPVPLPQILSLTASPGVGKATKTKQAEEYILQICANLDASRIMTATPESL
KKEQRKLVLKIEDRKEDPFGDVIKNIMNSIHTHAQLTPSCDLGSQNYEQWIVETERKAAM
EEDHKVQACAEHLRHYNEGLNLSNTIRMCDALVFLNEFHVEEIRKKTTPNDDGQTIQITE
TERFLFHLFKENKEELEKLAKNQQYENDSLCNLRHSILREFSTREKARGIIFTKTRRSTI
ALSQWIQENPKFADIGVKASYIIGGGGQSVVKPMTSTERSAMLKKFDKGDINLLVATSVL
EEGLDIPDCNFVIRYGLVTNEISMIQAKGRGRADDSSYTVVEVKNSCVTEKEHVNEHRLI
LMEKAIKNIKALDPKEYDRQIRDFQAQALMEEKVKKIKKKQKSMKNEKPSQVMFSCRGCS
TQVCTGEDIQVIENAHKVNVTTQFSELYVKRENTSLQERRLDFESIAFIACKTCGRSWGT
MMNYRSIECPCLLVKNFVVTLNGKKIPNCTRWADLPVKFPSFDYSEYAMRLAEGSDDEDT
E
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggcatctggtactgatgaaacaagggagaacctcattgaagacttgagagccagactg
aaggtgtgcattgtggtcgaccggctcctggatcagttacagtttatcccagttgacaca
aaggagctgattcgccaaagagcgaggacagatggtaatatagtagctgcggatctcctc
attgacgcggtcattaggaaacacccggccgaagggtggngattcctggatggactggaa
aactcaggttgtaaacatgcagcggactatttgcaggataaacgcccggatcccgcagaa
gaggaagataatgatcagtatgtccgacttattgagttactgtccccgagtcttgtggaa
atgaagacccaagaggtgtatgttcattgtctttcaaaagagctgatcacgagagaagac
tcagagattattagaacagatatagcaaacagaggaccgaggagtggcgcccgtgaactt
ctgaggtgcatcgtgaggggtcaacatgggtggttttcacagttcctcgacattttgaga
gaaaccgagcaccatgagctgtatgagctcactggagggtcacctgactctggcaagcaa
gatggacccaaagaaggcaaagccggcacagagaagatttcattcgcagctgatgagagc
caagatctgtatagaggagcagatgttttatccaaagaactgccaaatagccacaagccc
ccactcacagatggagccgagccagcggctgcagccggaggcccggagagtgcagatatt
agtcttcgggattatcagatggacgtcgcaagacctgccttagaggggaaaaacatcatc
gtatgcctcccgacaggaagtggtaaaaccagagtggcagtttatattaccaaaaaacat
ctggacagcaggagggcagaggggatgtctggaaaggttgtcgtcctagtgaacaagatt
cctctggtggagcagcattattccgctgagttcctgccgttactgaagtccacatataaa
gtggagagagtcagcggagactgccagctgaaaatctcttttacagagatcattaagaaa
aacgacgtcgtcatttgcacagcccagatcctggaaaactccctggaactgtcaaacaaa
ggagaagacgaaggcgtgaacttaagcgatctgagtctgcttgtaatagacgagtgtcat
cacactcagaagggcgacgtctacaacagcattatgatgcgctacctgcggaagaagcac
accaacatacggaagaagaaggagggcaaagaacccgtgcccctgcctcagatactgagt
ctgaccgcttcacccggggtcgggaaagcaaccaagacaaagcaggcagaggagtacatc
ctgcagatctgtgcaaacttagatgcttccagaataatgacggcgacaccagagagtctt
aaaaaggagcagagaaagttggttttgaagattgaagatagaaaagaggacccgtttggt
gatgtcattaaaaacatcatgaacagcattcatactcatgcccagctgacccccagctgt
gaccttggttctcagaattatgaacaatggattgttgaaactgagagaaaagctgctatg
gaggaagatcacaaagtccaggcttgtgcagaacaccttcgtcattacaacgagggcctg
aacctcagcaacaccatacgcatgtgcgatgctctggtgtttctgaatgaattccatgtg
gaagagattaggaagaaaacaactcctaatgacgatgggcagaccatacagatcacagag
accgaaaggttcctcttccatttgtttaaagagaacaaggaagagttggagaagttggcg
aagaatcagcagtatgaaaatgacagcctttgtaacctaaggcactcaattctgcgagag
ttcagcaccagggagaaggccagaggaatcattttcactaaaacacgccgcagtaccatt
gctctcagccagtggattcaggaaaaccccaagtttgccgacattggtgtgaaggcctca
tatatcattggaggaggaggccagagtgttgttaaaccaatgacctccactgagaggtca
gccatgttgaagaagttcgacaaaggtgacataaacctgctggttgctacgtccgtacta
gaggaaggtctggatataccagactgtaattttgttatccggtacggccttgtcaccaat
gaaatctctatgattcaggctaaaggccgaggaagagctgacgacagcagttacactgtg
gtggaggtaaaaaactcctgtgtgactgaaaaggaacatgtgaatgaacaccgcctgatc
ttgatggagaaagctatcaaaaatataaaagccttagatccaaaggaatatgacaggcag
atcagagactttcaggctcaagcattaatggaggagaaggttaagaagataaagaagaaa
cagaaaagcatgaagaacgagaaaccatctcaggtgatgttcagctgtcgaggctgcagc
acccaggtctgcaccggtgaagacatccaggtcatcgaaaatgcacacaaagtcaatgta
acaacgcagtttagtgaactctacgtaaaaagagaaaacacttctttgcaagaaagacgt
cttgattttgagagtattgccttcatagcctgcaagacctgcgggaggagttggggtaca
atgatgaactatcgctcaatcgagtgtccctgcctccttgtgaaaaactttgttgtaacg
ttgaatggaaagaagattcccaactgcaccaggtgggccgaccttcctgtcaaatttccc
tccttcgactacagcgaatatgcaatgaggctggccgagggctcggatgatgaagacaca
gaatga
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