Cynoglossus semilaevis (tongue sole): 103392193
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Entry
103392193 CDS
T04866
Symbol
prpf40a
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103392193 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csem03041
]
103392193 (prpf40a)
Spliceosome [BR:
csem03041
]
Complex A
U1 snRNP components
U1 related factors
103392193 (prpf40a)
Complex B
103392193 (prpf40a)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
103392193
NCBI-ProteinID:
XP_016895617
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All DBs
Position
16:12665495..12675673
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AA seq
890 aa
AA seq
DB search
MVICLKCVNSLLTESSSEANNGPSQASPYAGVPPSGIPPPFMGPPGIPPHFPPMGMPPMG
QRPPTMNPLPPGIMPPGMMPPMGAPPMGQMPGMMPPMMPGMMLPPRIPAASVQPTGPPGV
DTPTAAPGTTSATNGSPQEEQAKKKSVWTEHKSLDGKTYYYNTETKQSTWEKPDDLKSPV
EQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEPLAPAVT
TAPAVQAEATVTVAPVTETEPAKAVPEEQPAQTAAQPTPEVKTADVAVASSESPVAPEVA
KARXTKIHWPEIQKKIYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSAL
PKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFN
EQEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWS
EAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNR
ESFQKFLDELHDHGQLHSMSAWMEMYPTLSSDIRFVNMLGQPGSTPLDLFKFYVEDLKAR
YHDEKRIIKDILKDKSFLVEVNTSFDDFGSIISSDKRATTLDAGNIKLAFNSLLEKAEAR
EREREKEEARKMKRKEAAFKNMLKQATPPLEPEAAWEGVRDRFLKEPAFEDVTLESERKR
IFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSQSKSP
SEHSSSGESERSYKKSKKHKKKAKKRRHKSASPESDGEKKGRDRDGKRDKDLDKDKENDK
SRGKSHSDKQKSPKRKAAREEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggtaatttgtttgaaatgtgtcaacagtctgctgacagagtcttcatcggaggctaat
aatggcccgagccaagcgtcaccgtatgcaggtgtaccgccctcagggatacctccccca
tttatgggacctccaggaataccacctcatttccctcccatgggaatgcccccaatggga
caacggccacccactatgaatccattgcctcctggaataatgcccccaggcatgatgcca
ccaatgggagcacctccaatgggacagatgccaggcatgatgccacctatgatgcctggg
atgatgttgccccctcgcatcccagctgcgtctgtgcagccaacaggaccgcctggtgtt
gacactccaactgcagcacctggaacaaccagtgctacaaatggatctccacaggaggaa
caggcaaaaaagaagtctgtttggacagaacacaaatcactggatgggaaaacctattac
tacaatacagagaccaagcagtccacatgggagaaaccagatgatctcaaatcacctgtt
gagcaaatgctgtctaaatgcccatggaaggagtacaagtcagacacagggaagccttat
tattacaactctcagacaaaggagtctagatggactaaacccaaagagctggaagatctg
gaagccatgatcaaagcagaggaaaatggaacggcagagccactggcccccgctgtcacc
acagctcctgcggtgcaagcagaggcaacagtcaccgtagcacctgtaacggaaacggaa
cctgcaaaagcagtcccagaggaacagcccgctcagacagcagcgcagcccacacctgag
gtcaagacagcagatgtagcggttgcctcctcagagagcccagttgccccagaggtggcc
aaggccaggtaaacaaagattcattggccagagatccagaagaaaatatacaaatggaac
acaaaggaagaggccaagcaggcgttcaaagagctgctgaaggagaagggcgtgtcctcg
aactcctcctgggaacaggccatgaaaatgatcatcaacgaccctcgctacagcgcgctt
cccaaactgagtgaaaagaagcaggcctttaatgcttacaaagtccagacggagaaggaa
gaaaaggaggaggccagaattaaatacaaggagtccaaggaaaccttccagaggttcttg
gagaaccacgagaagatgacatccaccaccagatacaagaaagcagaacaaatgttcaat
gaacaagaggtttggagctgtgttccagagagagaccgactggagatctatgaagacgtc
ttgttctatctggccaagaaggagaaggagcaagccaagcaactcagaaagagaaactgg
gaagctctgaagaacattctggacaacatggccaatgtcacctatcgcaccacctggtct
gaggcccagcagtacctgctggacaaccccaccttcgccgaagatgaagagctgcagaat
atggacaaggaggacgccctcatttgttttgaggagcacatcagagccctggagaaggag
gaggaagaagagaagcagaaaactcttctgagggagaggagacgacagcgcaagaacaga
gagtccttccagaaatttctggatgaactccatgaccacggccagctccactccatgtct
gcctggatggagatgtatccaactctgagctcagacattcgctttgtaaacatgctggga
cagccaggttccactcctctggacttgttcaaattctatgtggaggatttgaaggctcgc
taccacgacgaaaagagaatcatcaaagatatcctgaaggacaaaagcttcctggtggaa
gtgaacaccagctttgatgactttggctccatcatcagctcagacaagagagcaactaca
ctggacgcaggaaacattaaactggcctttaacagtttgctggagaaggcagaagccaga
gagagggaacgggagaaagaagaggccagaaaaatgaaaaggaaagaagccgcctttaag
aacatgctgaaacaggccacgcccccactggaaccagaggccgcatgggagggagtcaga
gataggttcttgaaagaacccgcctttgaagacgtgactctggagtcggagaggaagagg
atatttaaagatttcatgcacgtcttggagcacgagtgccagcatcaccactccaagacg
aagaagcactccaagaagtccaagaaacaccacaggaaacgttcccgctctcgatcgggt
tcagagtctgaggacgaggaataccacaagaagaagaagaggtcgcagtccaagtcgccc
tctgaacactcctccagcggagagtccgagagaagctataagaagtccaagaagcacaag
aagaaggcgaagaagaggcgtcataagtctgcatcaccagagtctgacggtgagaagaaa
ggaagagaccgcgacgggaagcgcgacaaagacctggacaaagacaaggagaatgacaaa
tccagagggaagtctcactctgacaaacagaagtctcctaaaagaaaagctgccagagag
gagggcggctgggatacatctggcagcgagctgagcgaaggagagctggagaaaaggaga
agaactttactggagcagctggacgcaccgtga
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