Cynoglossus semilaevis (tongue sole): 103392424
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Entry
103392424 CDS
T04866
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csem04147
]
103392424
00535 Proteoglycans [BR:
csem00535
]
103392424
00536 Glycosaminoglycan binding proteins [BR:
csem00536
]
103392424
Exosome [BR:
csem04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
103392424
Proteoglycans [BR:
csem00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
103392424
Glycosaminoglycan binding proteins [BR:
csem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103392424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
DAG1
Motif
Other DBs
NCBI-GeneID:
103392424
NCBI-ProteinID:
XP_008327251
LinkDB
All DBs
Position
16:complement(16729822..16760966)
Genome browser
AA seq
1428 aa
AA seq
DB search
MPRMRTQVSGVLFLLLQSLVFSDAWFWSWTGTTALAPTVDPEGSGSPAGSGEQPTEDTVA
ARVTEERPGIRVTEQNWVQSTGAPQQTTLVPPTAHLENDMASEKGTDPPSQISEPEDSGV
SLLQLIGDPPPSEITQVYGPDNSPGYVFGPDANTGQLARAHLPSPFYRHFSLIFNVKPTS
DRGGVLFSVTDVPQQIMYVGVKLSAVQGNHQNVILYYTEPGSERSYEAASFRVHSMRDTW
TRFAIAVRDDKVMFYLNCDTDPQVSRIERSPDEMELDAGAGVFVGQAGGADPDKFLGVIG
ELRVVGDPRAAERHCEEDEDDSDMASGDGSGYGEPRPTEPAVENQRWTTAPPSSRPIQEP
PVIRKEEGSVSRGTATENHQVSVESRPGLPGSPGQAGAKGEKGDRGDKGERGDRGPIGAK
GESGSSSRGGGHGEKGEPGEKGSKGSAGFGYQGTKGDRGLPGPPGLPGPPGPTPDYLLTN
DGTVVPAGPRGPPGPPGPQGPVGADGEPGDPGEDGKLGPDGPPGFPGTPGDPGPKGEKVG
SSDGHPGARGPPGPPGPPGPGYRSTFVDMEASGFPDLESVRGLPGPPGPPGPPGLPGIST
ASTVLSSGAFGPPGKDGAPGQPGLPGLPGTDGSPGVPGAKGEKGDSGELGLPGPVGEKGS
RGDPGLSGPSGQSGLAGLPGPMGPVGPPGPPGPPGPSYRVGFDDMEGSSGGYSNGLPGRE
GQQGSPGFPGLPGKPGFPGLPGQKGSEGPVGKDGQPGLDGFPGPQGPRGERGDKGETGEP
GRDGSGFPGPPGPPGPPGQVVYSTSGNDRASLPGHPGLPGPVGPKGDSGEPGSPGYGIKG
EKGEPGLVIAPDGNLLEGLRGAKGDTGPSGPVGPPGHYGPPGIKGEIGMPGRPGRPGVNG
YKGEKGESGGGAGYSFPGPPGPPGMPGPPGPPVPLDRFNRYDDNSRNYPVVKGEKGERGF
PGLPGTTSNIDIYAFKNELKGESGDPGVKGEKGEPGGGYFDPLFGGAQGPQGPPGQPGLP
GPKGDYVIGPPGPQGPPGTPGVGYDGRPGAPGPPGPPGPPGSYPGAYRPNHAINIPGPPG
PPGPPGLPAHSSSVTVLKSYDTMIATARRQTEGSLIYIIDKADLYLRVRDGLRQVMLGQY
QPFYRDLENEVAEVQPPPVILYPQSQDQSHNNGAGHYSQSSPVIRPLEPPLHLPEDPKPP
PHYDPRFPDPRHTGHTDQTLVTQRVESRYPVTPQRRPSPPLPHPGGHGHTGSGLHLIALN
APQSGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRGSDRDHLPILNLKD
QVLFSSWSSVFGDRADRMRENVPIYSFDGRDIIRDSAWPEKMVWHGSDVHGQRQTDHYCE
TWRAGDRAVTGLASSLQSGLLLQQTSSSCSGSYVVLCIENALISQSKK
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgcccaggatgaggactcaggtctcaggagttttgtttttgttgctccagtctttggtt
ttctctgacgcttggttctggtcctggaccggcaccacggctttggcccccacagtggac
cccgaggggtcgggcagtccagcaggcagtggagagcagccaacagaggacacagtcgca
gcacgggtcactgaggaacgacctgggatccgggtcacggagcagaactgggttcagagc
actggagcccctcaacagaccactctagtgcctcctacagcccacctggagaatgacatg
gcgtctgagaaaggcacagaccctccgtcacaaataagtgaacctgaagacagtggagtt
tctctgctgcagctgattggagatcctcctcccagcgagatcacccaggtctacggaccc
gacaacagcccaggatacgtcttcggcccagatgcaaacacgggccaactggcccgggcc
cacctgccgagccccttctaccgtcacttctccctaatctttaatgtgaagcccacctcc
gaccgggggggcgttctcttctccgtcacagacgttccccagcagatcatgtatgtgggg
gtgaaactgtcagctgtgcaggggaaccaccagaacgtcatcctctactacacggaaccc
ggctcggagcgctcgtacgaagcggccagcttccgcgtccactcgatgagggacacctgg
acccggttcgccattgctgtgagggacgacaaggtgatgttctacctcaactgtgacaca
gatcctcaggtgtcccgcatcgagaggtcgcccgacgagatggagctggatgctggtgcc
ggggtctttgtcggtcaagccggaggagccgatccagacaagttcctgggggtcatcggc
gaactgagggtggtgggagacccccgtgctgccgagagacattgtgaggaggacgaagac
gactcagacatggcctcaggagacggcagtggctacggagaaccgaggccaacagaacca
gcggtggagaaccagaggtggacgactgcacccccatcctctcgacccattcaggagccc
ccagttatcaggaaagaggaggggtctgtttccagagggacggccactgaaaaccatcaa
gtctcagtggagtccagaccaggacttcccgggtctccaggacaagcaggagccaaagga
gagaaaggagaccgcggggataaaggggagagaggagaccgggggccgatcggagcgaag
ggagaatctggctccagctcccgaggaggaggccacggagagaagggagaacctggagag
aagggatcaaagggcagcgcaggctttggctaccagggaacgaagggtgatcgagggctc
cctggacccccaggcctccccggccccccaggacccacccctgattatttactcaccaac
gatggcaccgtggtgcctgcaggacccagaggaccaccggggcctccaggaccccaagga
ccagtaggagccgacggagaaccgggtgatcctggtgaggacgggaaactgggtcctgat
ggaccaccaggcttcccaggtacgcccggagaccccggacctaaaggagaaaaggtgggc
tcttcagatggtcaccctggggcgcgcggccccccaggcccacctggaccacctggacct
ggatacagatctacttttgtggacatggaagcctctggtttcccggacctggaatctgtc
aggggactacctgggccacctgggcctcctggtccacctgggcttcctggaatctctacg
gcgagcacggtcttgagttctggggcatttggacctccaggaaaagatggagcacctggt
caacctggtttacctggtctaccaggaactgatggaagtccaggagtaccaggtgccaaa
ggagaaaagggtgattctggagagctgggtcttccaggccctgttggagaaaagggatct
cgaggagaccctggtttatcaggaccttcaggacagtctggactcgctggtctgcccggg
ccaatgggccctgtggggccccccgggcctcctggacccccgggaccaagttatcgtgtt
ggatttgacgacatggaaggttctagtggcggatactccaacggactccctggacgggaa
ggacaacagggttctcctggttttcctggacttccgggtaaacctgggtttcctggtctg
ccgggtcagaagggcagtgagggaccagtgggaaaagacggacaaccaggactggacggg
ttcccaggacctcaggggccgaggggtgagagaggtgacaagggggagacgggtgaacca
ggtcgagacggatcaggattcccaggtccaccagggccccccggaccaccaggacaggtc
gtctactccacgtctggaaacgacagagcgtctctacctggacaccctggcctccctgga
ccagttggaccaaagggtgacagcggagagccgggttctcctggctatggaataaagggg
gagaaaggtgaaccaggtttggtgatcgctcctgatggaaaccttctggaaggattacga
ggagcaaagggggacaccggaccctcgggtccagtcggacctcctggtcattatggacct
cctggaatcaagggtgaaattggaatgcctgggagacctggtcgtcctggtgtgaatgga
tacaaaggtgaaaaaggagaatcaggagggggcgctggatacagtttcccaggtcctcca
ggaccacctggtatgcctggacccccaggacctcccgttcctctggaccgcttcaatcgc
tacgacgacaattcaaggaattacccagtagtcaaaggagagaaaggagagcgtggattc
ccaggacttccaggaaccacttctaacatcgacatctacgccttcaagaatgaactgaag
ggggagagcggtgaccctggagtgaagggtgaaaagggagagcctggtggtggatatttt
gaccccctgtttggaggagcacagggcccacaaggacctcctggacaaccaggtctacca
ggtccaaaaggagactatgtgatcggacccccggggccacagggcccaccaggaacacca
ggtgttggttatgatggacgcccaggtgcccctggtccacccggacctccaggacctcca
ggctcttaccctggagcctacaggcccaaccatgctatcaacattcctggtccacctggt
cctcctggtccacctggacttcctgctcactcgtccagtgtcacagtgttgaagtcgtac
gacaccatgatcgccacggcgcggcgtcagacggagggcagcctcatctacatcatagac
aaagctgatctttacctccgagtgagagacggactgagacaagtcatgctgggacagtac
cagccgttctacagggacctggagaacgaggtggcagaggtgcagcccccgcccgtcatc
ctgtacccccagtcccaggaccagtcccataataatggagcgggtcattactcccagagc
agcccggtcattcgacccctcgagcctccgctgcacctgcctgaagaccccaagcccccc
cctcattatgaccccaggttccccgaccccagacacacgggtcacactgaccagacgctg
gtcacccagagggttgagagcaggtatcctgtcacaccacagcgacgacccagccccccc
ctgccccatcctgggggccacgggcacacgggatcagggcttcacctcatcgccctgaac
gcccctcagtccggtaacatgcgaggaatccgcggcgccgacttcctgtgcttccaacag
gcccgcgccgtgggtctgaagggaaccttccgagcgttcctgtcctccaagcttcaggac
ctctacaccatcgtccgtggctcagacagggaccacctccccatcttgaaccttaaggac
caagtgttgttcagcagctggtcgtccgtctttggagacagggcggacagaatgagggag
aacgtccccatttactccttcgatggcagggacatcatcagggacagtgcctggccagag
aagatggtgtggcacggctcagacgtccatggacagagacagaccgaccactactgtgaa
acctggcgagccggcgaccgagcggtgaccggcctggcctcgtccctccagagtggcctc
ctcctgcagcagacctccagcagctgctccggctcctacgtcgttctctgcatcgagaac
gccctcatatcacagtccaaaaaataa
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integrated database retrieval system
