Cynoglossus semilaevis (tongue sole): 103393231
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Entry
103393231 CDS
T04866
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
csem01001
]
103393231 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
csem04054
]
103393231 (ciita)
Enzymes [BR:
csem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
103393231 (ciita)
Protein kinases [BR:
csem01001
]
Serine/threonine kinases: Other
TAF1 family
103393231 (ciita)
Pattern recognition receptors [BR:
csem04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
103393231 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
AAA_16
LRR_14
LRR_8
nSTAND3
DUF815
AAA_22
NB-ARC
AAA_7
nSTAND_NTPase5
Arf
TsaE
Motif
Other DBs
NCBI-GeneID:
103393231
NCBI-ProteinID:
XP_008328336
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All DBs
Position
17:complement(11648054..11659307)
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AA seq
1382 aa
AA seq
DB search
MEADTALTAAYRMLDLDIDNIKWPGSRSTEASFSLNPTGVTALSKSLGFSASENVGRTAH
VDYFNISTGSAALGPCAAADTSGSIPRTCLEGSLRVRGAPDWATLTEELVCVKGEARRSS
HAGFTDVTALFSEPTEDSLTNAHHNAFSQIKPHSMTVGAAENMELSLWATLKKSTCSFDN
VTDLQGHKDGDEEEERLDSHWDATMHEGDQDNSDYGDLPEYIVDLLHDDNQLMHLVHRTA
EQFRDSLLSGDDFLNDAAMTTELQRQENKLSARKLSRRKRQRVELQTQSQQAQVENTPFR
TKRFRATVADSESGPRPSGLSHLAAAPARILQLPPSIHFITIPDNPGCAVVQTVKLSPPV
VQLPIQNTAAPHTYILVPSTSPPSKCQLQPLSPVGGAVAPVQMSSSPPGSLSDSASRAMS
PRQIFPLPPRSETSPCKESSCPQSPTVLNVTQVVKDYIREVKAHMNRTCLCIEEGLSLTC
HCVDVPVSQREMLCSGKNTNKELRIMGDTDRQKTLLERSQIFRDIHGHNKRYILLLGNAG
MGKTTLIKKLFLDWSTDCIPQFDFVFVLDKKALFLTRPCYSLQTLLLNLSSFVPPCLDPD
AVYAQILAASKRVLLIFDGFEELRDYEILIQTQDRDLMTSLQKDSKAGMFTVRQLYSAIL
QRALLPDCTLLLTSRPRGAASQLLRRVNSILEVCGFSTSDIETYLSRYFTDPVLRASALD
CLKNSSYLHLLCWNPGLCRLVCMVLEHSKTLGAPPRTLTELCHQVLCLKLEKSKMETQVQ
TQTSLPSVKGNQSLSNIQTQIRPDARRRRQRARKNQTKEKNEMEQEERRSVGQEACGVEE
KNFMDQLSSLAWETVKANSSILPTGHTLSAKFKDFALRTRLICSHPLRKEPVVPKAKEEE
AGRDNPDKKAGDENQNKKGIRGRKAFENVNPSDDCVLFWANPFLQSYLAGVHLSLSRNVS
ERHFLQALPALSGPKGRRRHQIEEQGLTQRFAVSLLFHNRTLLQRLLSFTKTSFKNTVSK
QTLVAKQLQGLLYGDLSPAQILEVCHCMHEASTTYGEGNRGSCSAQLVSHMVENLPAFLS
FCGIPLRPPDVFTVKYILEKGGAQGRGFRLDLEDTGIQVSGLRSVVGLNNIKTYRACVAD
VIALWEQLEESGEEELLQQAVSRLELYPLKITQVCHVEHLAKLVDIHVHKRLSDSCTQSD
SILAEGVPAIRELRKLEFELGPDRGPLGLPRLWELLPGLMNLQHLDLENNKIGDGGSEML
ANTLITLPSLEILNLSQNCIGDRGVKNLAPALKSLPKLHSLSLYSNMISDEGAEKLASVL
PLMASLTDLDVKYNKLTDVGAISLGASLRNCRNIKTLRMWNQCIPYGVFERLKQQDSRIL
WH
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagacacagcgctcacggcggcgtacaggatgctggacttggacattgacaat
atcaagtggccaggatcaaggtccacggaggccagtttttccctgaacccaacaggagtc
actgccctgtcaaaaagcctcggtttttcagcatcagaaaatgtgggaaggaccgctcac
gtcgattacttcaatatatctacaggctctgcggccctcggaccctgtgctgcagcagac
acaagcggcagcatcccacgcacctgtctggagggcagtctgagagtgaggggtgcccct
gattgggccacactcacagaggaacttgtatgtgtgaaaggagaagcacgtcgcagttca
catgctggattcacagatgtgacagctttattttcagaacccacagaagactcactaact
aacgcacaccacaatgcgtttagtcaaataaaacctcacagcatgactgtgggtgctgcg
gaaaatatggaactttccttgtgggccaccttaaagaagagcacatgcagctttgacaat
gtaacagatcttcaaggtcataaagatggtgatgaagaagaagagagactggattcacac
tgggatgccacgatgcatgaaggagatcaggacaactctgactatggagatctaccagaa
tacatcgtggatctcctacatgacgacaaccagctgatgcatttagtgcatcggaccgca
gaacaattcagggactcactgttgagcggtgacgacttcttaaatgatgctgccatgaca
acagaactacagagacaggaaaacaaactcagtgccagaaaactgagcaggagaaaaaga
caaagagtagaactgcagacacagtcacaacaggcacaagttgaaaacacacctttcagg
acgaaacgattcagagcaacagtcgctgactcagaatcagggcctcgaccttcaggttta
tcccacctcgcagcagctccagccagaattctccagcttcctccttccattcacttcatc
accatcccagacaatcccggctgtgctgtggtccagactgtgaaactttcacctccggtt
gttcagcttccaatccagaacacagctgctccacacacgtacattttagttccatctacc
tcacccccaagtaaatgccaactgcagccactttcaccagtgggtggtgctgtagcaccg
gtccagatgagttcatcaccaccaggatctctgtcggactctgctagcagagcaatgtct
ccccggcagatatttccactcccacccagaagtgagacgtcaccgtgtaaagagtcaagt
tgtcctcagtctcccactgtcctcaatgttacgcaagttgtaaaggattacatcagagaa
gtcaaagcccacatgaatcgcacctgcctgtgtatcgaggaaggcctctcgttgacctgt
cactgtgtggatgtgccagtgagccagagagagatgctctgctctgggaaaaacaccaac
aaagagctaaggatcatgggagacacagatcggcaaaaaaccttgttggaacgcagtcag
atttttagagacatccatggacacaacaaacgatacatcctgctacttgggaacgcagga
atgggaaaaaccaccctgataaagaaactgtttcttgactggtccacagactgcatccca
cagtttgactttgtcttcgttctcgacaagaaagctctttttttaaccagaccctgctac
agtcttcagaccctccttttgaacctttcctctttcgtccctccctgcctggacccagat
gctgtttatgctcaaatccttgcagcctcgaagcgtgtgctcctcatcttcgatgggttt
gaggagctacgggactatgagattcttattcaaactcaggacagagacttgatgacgtcg
ctgcagaaggacagtaaagcagggatgttcaccgtgaggcaactttactctgccatcctt
caaagggctcttcttccagactgcactcttctcctcacatcacgaccaagaggtgctgct
agccaactcttgcggagggtgaatagcatcctggaggtgtgtggcttttccacctcagac
atagagacatatctgtccaggtacttcactgatcctgtccttcgagcttctgctttggac
tgcctgaaaaactccagttacctacatttactctgctggaaccctgggctttgtcgtttg
gtgtgcatggtgttggaacactcaaagactttgggtgctccaccaagaactttaacagag
ctgtgccatcaagtcctgtgtttaaaattggagaagagtaaaatggaaactcaagttcag
acacaaacatctctgccgtctgtgaaaggaaatcagagtttgagtaatattcagactcag
atacgccctgacgcccgccgtcgcagacagagagcaagaaaaaatcagacgaaagagaaa
aatgagatggaacaggaggagcgaaggagtgtcgggcaggaggcctgtggagtagaggag
aagaactttatggaccaacttagctctttagcctgggagacggtcaaggccaactcctcc
attcttcccactggacacaccttatctgccaaattcaaggattttgctctcagaacaagg
cttatctgctcgcaccctctgagaaaggagccagttgttccaaaagccaaggaggaggag
gcaggaagagataacccagacaaaaaagcaggagatgagaaccaaaacaagaagggaatc
agaggcaggaaagcttttgagaacgtcaaccccagcgatgactgtgtcctgttctgggcc
aacccctttctccagagttacctggcaggtgttcatctgtctttgtcaaggaatgtgtcg
gagcgtcacttcctccaggctctgcctgctctgtctggaccaaagggccgtcggcgacat
caaatagaggagcaggggttgactcagcgcttcgccgtcagtctgctgttccacaacaga
acactgctgcagagactcctctccttcaccaaaacgtctttcaaaaacaccgtcagtaag
cagactctcgtggccaaacaactccaaggtctattatatggtgacctgagtccagcccag
atcctggaggtttgtcactgtatgcatgaagccagtaccacatatggggagggcaaccga
ggcagctgcagcgctcaactggtttctcacatggtggagaatcttccagcattcttatct
ttctgtggaattccactaagaccaccagatgtgttcactgtgaaatacatacttgaaaag
ggtggagctcaaggtcgagggttccgcctggatctggaggatactgggatccaggtttct
gggctgaggtctgtggtggggctcaacaacatcaaaacgtacagggcttgcgttgctgat
gtgattgcgctctgggagcagctggaggagtctggtgaggaggagctcctccaacaggca
gtgtccaggttggagctgtaccctctgaaaatcacacaggtgtgtcacgtggagcacctg
gcaaagctggtggatattcatgtgcataaaaggctgtcggacagttgcacccaatcagat
tccatcttggcagaaggggtaccagccatcagggaactacgcaagctggaatttgaactt
ggcccagacagaggtcccctgggtcttcccaggctctgggagctcctgccaggcctaatg
aacctgcagcacctggatcttgagaacaacaagataggagatggtggatcagagatgttg
gctaacactctgataaccctcccttccttggaaatactcaatctttctcagaattgtata
ggagaccgaggagtgaagaacctggcaccagccctgaagtctctacccaaactgcacagt
ttaagtctctacagcaatatgatttctgatgaaggtgcagagaagctggcatctgttctc
ccactcatggcttctctcactgacctggacgtgaagtataacaagctgactgatgtcgga
gcaatcagtcttggagccagtctaagaaactgtcgaaacataaaaaccttaaggatgtgg
aaccaatgtattccctatggagtatttgagcggcttaagcagcaggacagtcgcatcctg
tggcattaa
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