Cynoglossus semilaevis (tongue sole): 103393952
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Entry
103393952 CDS
T04866
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103393952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csem03019
]
103393952
03036 Chromosome and associated proteins [BR:
csem03036
]
103393952
Enzymes [BR:
csem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103393952
Messenger RNA biogenesis [BR:
csem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103393952
mRNA degradation factors
5'-3' decay
Decapping complex
103393952
Chromosome and associated proteins [BR:
csem03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103393952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
103393952
NCBI-ProteinID:
XP_008329300
UniProt:
A0A3P8VM28
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All DBs
Position
18:2409189..2418647
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AA seq
489 aa
AA seq
DB search
MATARTENVGTMVMGLNKQNGQLRGQTKPASVQPAPMTQAKAMGVPAKVGGAPQDGGGIK
FGDDWKKSLKLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDYIQALVMVPTRELALQVSQICIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMSKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPGSIDKSLYVAEFHTSSGDCEVEEVEE
KAGLQQDSS
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgccagaacagaaaatgttggcacaatggtcatgggactgaacaagcaaaat
ggccaactcagaggacagaccaaaccagcttcagttcagccagcaccgatgactcaagct
aaagctatgggtgttccagcaaaagtgggcggcgcccctcaagacgggggaggcatcaag
tttggagacgattggaaaaagagcctcaagcttcctcccaaagacaacagggtcaaaacc
tcagatgtcacatcaactaaagggaatgaatttgaggattactgcctcaaacgagaactc
ctcatgggcatctttgaaatgggctgggagaaaccatcacccatccaggaggagagcatt
cccatcgccctgtccggacgggatattctggcccgtgctaaaaatggaaccggaaaaagt
ggagcttatctcatcccactgctggagaggatagacctgaaaaaggactacatacaggct
cttgtcatggtgcccactcgtgagctggcgctgcaagtgagtcaaatctgtatccagatc
agcaaacacctgggaggagttaaagtcatggcaaccaccgggggcactaatcttcgagat
gacatcatgcgcctggatgagactgtgcacgtggtcattgccacccctggcaggatcctg
gatttgattaagaagggagtggcaaaagtggatcgagtccagatgatggtgatggatgag
gcggataagctgctgtctcaggactttgtggtgctcatcgaggacatcatcagctttctg
gccaagaacagacaaattctgctctactctgcaaccttccccatcagtgtgcaaaagttc
atgagcaaacacctgcagaaaccctacgagatcaacctgatggaggagctgacgctgaag
ggcatcactcagtactacgcctacgtcaccgagaggcaaaaagttcactgcctcaacaca
ctcttctccaggcttcagatcaaccagtccatcatcttctgtaactccacacagcgggtg
gagctgttggccaagaagatcactcagctgggttactcctgcttctacatccacgctaag
atgatgcaggaatacaggaaccgtgtgttccacgacttcagaaatggactgtgcagaaac
ctggtgtgcacagatctgttcaccagaggcatagacatccaggccgtcaacgttgtcatc
aacttcgacttccccaagaacgcagagacttacctccatcgtattggaagatcagggagg
tttggtcacctgggcctggccatcaatctgatcacgtcagaagatcgattcaacctgaag
gccatcgaagaccagctggtgaccgacatcaagcccattcccggcagcattgacaagagc
ctgtacgtggccgagttccacacctccagcggtgactgcgaggtggaggaggtggaggag
aaggcaggactccaacaggacagctcctaa
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