Cynoglossus semilaevis (tongue sole): 103395242
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Entry
103395242 CDS
T04866
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03030
DNA replication
csem03420
Nucleotide excision repair
csem03430
Mismatch repair
csem03440
Homologous recombination
csem03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103395242
03420 Nucleotide excision repair
103395242
03430 Mismatch repair
103395242
03440 Homologous recombination
103395242
03460 Fanconi anemia pathway
103395242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csem03000
]
103395242
03032 DNA replication proteins [BR:
csem03032
]
103395242
03400 DNA repair and recombination proteins [BR:
csem03400
]
103395242
Transcription factors [BR:
csem03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
103395242
DNA replication proteins [BR:
csem03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
103395242
DNA repair and recombination proteins [BR:
csem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
103395242
MMR (mismatch excision repair)
103395242
DSBR (double strand breaks repair)
HR (homologous recombination)
103395242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
DUF223
SNIPE
GAS
zf-C2H2_DHX34
Motif
Other DBs
NCBI-GeneID:
103395242
NCBI-ProteinID:
XP_008331121
UniProt:
A0A3P8W054
LinkDB
All DBs
Position
19:10638476..10666622
Genome browser
AA seq
633 aa
AA seq
DB search
MSVTLTDGAIQALFRGSQVKDPVLQLLNKRQVCNKGSTRVNLRMSDGQHYSNCFLLNTSL
NYLADTDLLSPKCVCKLTKTTVQAFEDGRLVVVVLELEILQSAEETNEVIGNPTPHNPQG
QSSVSEASVTDEEPGPSHGHSSVASPMKSSPMKSSPMKFSSAVSSPMKSSPMKMSPMKIS
PMKFSPSKSRDASPSPLIPISKLNPYQNKWTIKARVTNKSNIRTWSNSKGEGKLFSFEIV
DESGEIRITAFNKEVDKFFSLVEPGKVYKISNATLKLANKQYNKLRNDYEVTLHGHSLIV
LCDDGQGVPTVHCDFVSIAELENREKDTVIDVIGVCKSAEDVSRITTKAGREVSKRALVL
IDTSEKVVTVTLWGKEAEKFDGSREPVVAIKGARLSDFGGRSLSTVFSSKLMVNPDIPEA
FKLRAWYDQKGRGLQNQTLIDTWSARGAANIKWKTLSDVKSERLGHDVKADYFSCVATVV
FMRKENCLYQACPSAHCSKKVLDQRNGLYFCEKCNREFRNFNYSLILSVNLADLSDNQWV
TCFQETAETLLGLSAEELGQLKDTDEAAFDEVFQKANFKTYIFKNKVKLETYNDESRVKV
TVMEVKPIDHREYSRTLLSNIRKLSSSTRSQSY
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtaacgctgacagacggggcaattcaagccctcttcagaggctcacaggtgaaa
gatccggttctccagctactgaacaagcgtcaagtctgtaataaaggctcaaccagggtt
aatctccgaatgagcgatggtcaacactattcaaattgctttttgctgaacacctcgtta
aactatctggcagacactgacctactatcacctaaatgtgtctgtaaacttacaaaaacc
acagtccaggcttttgaggatggcagacttgtggtggttgtgttggaattggagatactg
cagtcggccgaggaaaccaatgaggttattgggaatcccactccccataatccacaaggt
cagagttcagtttcggaagcatctgttacagacgaagaaccagggccgtcacatggacac
agcagcgtagcttctccaatgaagtcttcacccatgaagtcttcacccatgaagttctca
tccgcagtcagttcacccatgaaaagttcacctatgaagatgtcacctatgaaaatttcc
ccaatgaaattttcaccttcaaaatcccgtgatgcttctccaagtccactgatccctatc
tccaagctcaatccttaccaaaacaaatggaccattaaagcccgagttaccaacaagtcc
aatatccgcacctggagcaactctaaaggagaaggaaagctcttctcctttgagatagtg
gatgagagtggagaaattaggatcacagccttcaacaaggaagttgacaagtttttctcc
ctagtggaaccaggaaaggtgtacaaaatctccaatgctacactgaagctcgccaacaaa
cagtacaacaaactgaggaacgactatgaggtgacccttcacggccactccctcattgtg
ttgtgtgacgacggccagggagttcccacagtgcactgtgactttgtgtccatagcggag
ctggagaaccgagaaaaagacaccgtcattgatgttattggtgtgtgcaagagcgcggag
gatgtatcccgaatcaccactaaggccggaagagaagtctccaagagggccctcgtcctc
atagacacgagtgaaaaagtggtgacagtcacactgtggggaaaggaggcagaaaagttc
gatggcagcagagagcccgtggttgccatcaaaggagctcgtttgtcagatttcggaggc
agatctctctcaactgtgttcagctccaagttaatggtcaacccagacatacctgaggct
ttcaaactgagggcatggtatgaccagaaaggccgtggtcttcagaaccaaaccctgatt
gacacctggtcagcgagaggtgcagcaaatattaagtggaaaactctcagtgacgttaaa
agtgaacggctgggacatgacgtgaaggctgactacttcagctgtgtggctacagtggtg
ttcatgcgtaaggagaattgtctctaccaggcctgtccgtctgcacactgcagcaagaaa
gtcctagaccaacggaacggactgtacttctgtgagaagtgcaacagagagtttcggaac
tttaactacagcctgatactttcagtaaacttggcagatttaagcgacaaccagtgggtt
acctgcttccaagagacagctgagaccttattgggtctcagtgcagaagaactaggacaa
ttaaaagacacagacgaagcagcatttgatgaagtcttccagaaggccaacttcaaaacg
tacatcttcaaaaacaaagtcaagcttgaaacatacaatgatgagagtcgagtcaaggta
acagtaatggaagtgaaacccattgaccacagggaatacagcaggacactcctcagcaac
atccgcaaattgtccagctctactcggtcccagtcttactaa
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