Cynoglossus semilaevis (tongue sole): 103395645
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Entry
103395645 CDS
T04866
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103395645 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csem03021
]
103395645 (pcf11)
03019 Messenger RNA biogenesis [BR:
csem03019
]
103395645 (pcf11)
Transcription machinery [BR:
csem03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103395645 (pcf11)
Messenger RNA biogenesis [BR:
csem03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103395645 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
Ribosomal_60s
SHOCT
Motif
Other DBs
NCBI-GeneID:
103395645
NCBI-ProteinID:
XP_016897267
LinkDB
All DBs
Position
19:complement(16713383..16727351)
Genome browser
AA seq
1562 aa
AA seq
DB search
MEESAARKEACREYQSSLEDLTFNSKPHINMLTILAEENLTFAKDIVAIIEAQISKAPPQ
EKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICVFEKVDENTRKSLFKLRSTWDEVFPL
KKLYALDVKVNSVDPAWPIKPLPPTVNASIHVNPKFLKQSEEAPSPQPAPSQPPAVVTPP
PVAQPVPAVSQSSLTQEQQIRQQLLAKQKQLLELQQKKIELELEQTKAQLAGGFVLPTVA
PTSGPVAPTTTIKPTVSQPAPVVRPWIPPQNQPDPKPLTRDPRLNRSAQPAAPQVKEQPT
LKKDTPAVTGSPALTPEKRPLEKSTRLDRSKTQKKESVEDKPKSKSLSPTAKLVQSKSKP
SETEKSSDDSKKDHRPKKRPQDKTAEAKEDEQKEKRRCSDKKDREEVSSAQDLQKSGKGK
MMNGLTAKRDLDDSADKSDFKSGGSARTHSRKRTRSRSRSRSPNSSPKRKERRSPKGRTR
SSSPSPHKSGKPRRPRADEHGKTGRDDRLLLRKTQSDNRKSKSRSETRDSHSPLSAKETK
DGTHRWRSGWEDNKHTSKSSEDTHLKPGPQRHKPYSAPSRPSTPRTPKHRLSVDANLQIP
DVLNSASKKDLLRKASKRLESGEISQEDFLSVVHRIKHFFQYQEEKQQRSESWDDSADDL
ASNNQSPQTDPPSSKSRPREAMDPAELSYYEHKSKLRKTQVAHRVAKQEWEGEDKPEDGE
REAPEEKTGSGRTPSHPPPHKYRPGEWSGTSLKVRVYTAQGWSLDNADLCFFLTPADERR
SKEREDPRPPTGPMIEEYNHGKEFPSLKSLQGLRFIRKVDPRESSEREWNSPLTERQRDE
QKSGYDAPRRYPVDARQSDPRRPEIALPHGTVVHRNCPSPGSVDQPVPRFERERLSPIHQ
KDSTEMSPIPRFESPNSEHSDDAPLSLDAPAPHPHLPPKSILKRGGPLSAVRQHSNSPGH
TPPHEPGPPLQRFDGPDPMVPPRPHPPGWYEDGPHLQGPGRFDGGRPPLHNVLERFDGPD
GPHMPHGLVRGGDGMGRFDGHPPPQGPGRFEGPMGQQPPVRFANQGPGPSHFDPQHCFEN
SLAPGPGPLGFQQQRPVRFDGPPNQLGPMRFEGPSRFDGPAPRFDSHFEGQQGPPRFPPQ
HNMQPPMRPMGQPVYDNQMVPQQNFNMGPQRFPEPMNPTFPTGPMTFPAQPSLQQGNFNM
QPAAAFNQSGPVPFYNTAAPSVGMQQPVNLMGNMNQPFLPQNTAPFRPQVPQVGVPPENH
FGQVDVNDLLSKLISNGIIKPSQPEAVVPVGIEPTAAAPAAAPAVEEEEEEDQEEEEEDV
PDLTNFTLDELKQRHESVVTKLYSGNQCCLCSMRFTAAQTDMYADHLDWHFRQNHAGKVA
SKKITHRRWYYTLTDWIEFEEIADLEERAKSHFFEKENEEEVQKNQAAAKEKEFQSVRAA
KDQVGELCEICQEPFETYWVEEEEDWFLKDAVRVDDKNFHPSCFEDYKNTSYVDVTPSPK
KLLTDHPLSAFVKMEEEESACTSCSAPDTDSVKQEVAAETAEVPFVKEEEEVLTEVQSEN
TA
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atggaggagagcgcagcgaggaaggaggcctgccgggagtatcagtcctccttggaagac
ctgacgttcaacagcaaaccgcacatcaacatgctcaccatcctggccgaggagaacctg
accttcgccaaggatatcgtggcaattattgaagcacaaataagcaaggccccacctcaa
gagaagcttccagttttgtacttagtggattccatagtgaagaatgttggaggagagtac
cttgctgtgtttgctaaaaacctaatcacttcatttatttgtgtctttgaaaaggtggat
gaaaacaccagaaagagtttgttcaagttacgctccacgtgggatgaagttttcccactg
aagaagttgtacgcgctggacgtcaaggtcaactctgtggacccggcctggccaatcaag
ccgctgccgccgaccgtcaacgccagcatccacgtcaacccaaagtttttaaagcagtct
gaggaagctccgtctccccagccagctccctcccagcctcctgccgtggtaacaccccca
cccgttgcccagccggtccctgctgtgagtcagtccagcctgacccaggagcagcagatc
cgacagcagcttctggccaaacagaaacagctcctggagctccaacagaagaagattgaa
ctggagctggagcagaccaaagcacagctggccggtgggtttgttttaccaacggtcgct
ccaacctctggtccagttgcaccgaccaccaccataaagcccaccgtcagtcagcctgcc
cctgtggtccggccctggatccctccgcagaatcaacctgacccaaaacctctgaccagg
gaccctcgtctaaaccgctctgcccagcctgctgccccccaggtcaaagagcagcctact
ctgaaaaaagacacacctgcggtgacaggaagtcccgccctgacaccagagaaacgcccg
ctggagaagtccactcgtctggacagatccaaaacccagaagaaagagtcagtggaggac
aagcccaaatccaagtctctttctccaactgccaaactggtccaaagcaaaagtaaaccg
tcggagacggagaagtcttctgatgactccaagaaagatcacaggcccaagaaacggccg
caggacaagaccgcagaggccaaggaggacgagcagaaggagaagaggaggtgcagtgac
aagaaggacagggaggaggtgtcgtcagcacaggatcttcagaagtctggtaaaggcaaa
atgatgaacggtttgaccgcaaagcgtgacctcgacgattctgccgacaagtcggacttc
aagagtggaggcagtgcacgaacacattccagaaaacgcacgcgctcacggtcccgctca
cgctcgcccaactcttcaccgaagcggaaggaaagacgctcacccaagggtagaacccga
agcagctcgccatcgcctcacaagagcgggaaaccaaggaggccgcgggcagacgaacat
ggtaagacgggccgagatgaccgtctcctactcagaaagacccagtcggacaacaggaag
tccaagagtcgctcagagaccagggactctcactcaccactcagtgccaaggagaccaag
gacggcacacatcgatggaggagcggctgggaggacaacaaacacacctccaagtcgtca
gaggacacgcacctgaaacctggccctcagagacacaaaccgtacagcgccccaagccga
ccatccaccccccgtactccaaaacatcggctcagcgttgacgccaacctgcagatccca
gacgtcctcaactctgcctccaagaaggatctgctcagaaaagccagcaagcgtctggag
agcggtgagatctcccaggaggacttcctcagcgtggtgcaccggatcaaacacttcttt
cagtatcaggaggagaagcagcagcgctccgagagctgggatgactctgccgatgacttg
gcctccaacaatcagtctcctcagacggatccaccctcctccaagtcccgcccccgcgag
gccatggacccagcagagctttcttactatgaacacaagtctaagctgaggaaaacgcag
gtggcccaccgagtggccaagcaggagtgggagggtgaggacaagccggaggacggcgag
agagaagcgccggaggagaagacgggcagcggccgcaccccgagccaccccccacctcac
aaatacagaccaggtgagtggagcgggaccagtctgaaggtccgggtctacacagcacag
gggtggtccctggacaacgctgacctttgtttcttcctgacacctgcagatgagcgacgc
agtaaagagcgggaggatccgcgacctccaactggtccaatgattgaggagtacaaccac
ggaaaagagttcccctcactgaagtccctgcagggtctgcgcttcatccgaaaagtcgac
cccagagagtccagtgagagagagtggaactccccactgactgaacgtcagcgcgacgag
cagaaaagcggttatgatgctccgcgccggtaccccgtcgacgccagacaatcagatcct
cggagacctgaaattgccctcccccatgggaccgtggtccacaggaactgtccaagtcca
ggcagcgtggatcaacctgtgccgcggttcgagcgtgaacgtctctcgcccatccaccag
aaggattcgacagagatgagccccatccctcggtttgagagtcccaacagtgaacactct
gacgacgcccccctcagtctggacgccccagctccacacccccaccttccacccaagtcc
atcctgaagaggggaggtcctctgtccgccgtacgacagcacagtaactccccgggacac
acgccgcctcatgaacctggaccccccctacagcgctttgatggacctgatcccatggtc
ccacctagaccccaccctcctggctggtatgaagacgggcctcacctccaggggcctggc
aggtttgatggaggcagaccgcctctccacaacgtcctggagcggtttgacggaccggac
ggcccacacatgcctcacggcctggtgaggggcggggatggtatgggcaggtttgacgga
caccctccccctcagggccccgggaggtttgagggtcctatgggccaacagcccccggta
cggttcgccaaccaggggccgggacccagccattttgatccacaacactgttttgaaaac
agcctggcccccggtcctggacctctgggcttccaacagcagcggcctgtgcgctttgat
ggcccccccaaccagttgggcccgatgaggttcgaaggccccagtcgatttgacggtcca
gcccccaggttcgactctcactttgaggggcagcagggcccccccaggttccctccccaa
cacaacatgcagccccccatgaggccgatgggccagcccgtttatgataaccagatggtg
ccgcagcagaacttcaacatgggcccacagcgtttcccagaacccatgaaccccaccttc
cccacgggaccaatgacgttcccagcacagcccagtctgcagcaggggaacttcaacatg
cagccggcagccgccttcaaccagtcgggccccgtccctttctacaacaccgctgccccc
agtgttggcatgcagcagccggtgaacctgatggggaacatgaaccaacccttcctgcct
cagaacactgcccctttcagaccccaggtaccacaggtgggggtgcctccagaaaaccac
tttggtcaggtggacgtcaacgatcttctctccaaactcatctccaacggcatcatcaaa
ccctcgcagcctgaagccgtcgtgcccgtgggcatcgaacccacggctgcagctcctgct
gctgcaccagcggtcgaggaggaggaagaggaggaccaggaggaggaggaggaagatgtg
cctgacctcaccaacttcactctggacgagctcaaacagcgccatgagagcgtggtgacc
aaactgtactcaggaaatcagtgctgtctgtgcagcatgaggttcactgcagcgcagact
gacatgtacgccgaccacctggactggcacttcagacagaaccacgctgggaaggtggcc
agcaagaaaatcacacaccgccgctggtactacaccctgacggactggattgagtttgag
gagatcgctgacctggaggagcgagcaaagagtcacttctttgagaaggagaacgaggag
gaggtgcagaaaaaccaggcggcagcgaaggagaaagagttccagagcgtcagagccgcc
aaggaccaagtaggagagttgtgtgaaatctgtcaggagccgtttgagacgtactgggtg
gaggaggaggaggactggttcctgaaggacgccgtcagagtggacgacaagaacttccat
ccttcctgttttgaggattataaaaacacgtcgtacgtcgacgtgacgccttcacccaaa
aagcttctgactgaccacccactcagcgcctttgtaaagatggaggaggaggagagcgcg
tgcacttcctgctccgcccctgacactgactcggtcaaacaggaagtggctgcggaaact
gctgaggttccttttgtcaaggaagaggaggaggttttaacagaagtgcaatctgagaac
acagcgtaa
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integrated database retrieval system
