Cynoglossus semilaevis (tongue sole): 103396029
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Entry
103396029 CDS
T04866
Name
(RefSeq) collagen alpha-1(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04382
Cornified envelope formation
csem04510
Focal adhesion
csem04512
ECM-receptor interaction
csem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103396029
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103396029
09142 Cell motility
04820 Cytoskeleton in muscle cells
103396029
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103396029
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csem04147
]
103396029
00536 Glycosaminoglycan binding proteins [BR:
csem00536
]
103396029
Exosome [BR:
csem04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103396029
Glycosaminoglycan binding proteins [BR:
csem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103396029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103396029
NCBI-ProteinID:
XP_008332175
UniProt:
A0A3P8WHU6
LinkDB
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Position
20:3397394..3414115
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AA seq
1652 aa
AA seq
DB search
MRRPVVPVPVVLCAVMLMSAGAKNCVCNGQLRCHCEGVKGNRGDKGFQGIQGLPGPEGRP
GSDGRVGPMGFLGNTGPDGPAGPKGDLGPEGKEGFAGAHGFPGLPGVQGPPGPPGFPGCN
GTKGDDGHPGVPGANGRNGNPGPPGLRGPKGDTLVSEPFVGPPGRKGDPGLQGEPGNPGE
PGDRGPRGSDGHSGRPGPPGSKGQEGTGGFPGPRGPKGRTGPSGSPGPPGRIREFSTETQ
DQIEGVKGDKGDAGEKGCKGERGAVDESSHIKGSKGEIGQQGPEGKPGKNGDPGPAGHQG
RPGPRGDPGYPGRQGGVGEKGAQGSTGQPGKVYGTVPVPLKGYRGDPGPPGHQGPPGHQG
VVGFPGPDGLPGRVSGIPGPGPQGPPGFIGPKGEPGEPAQYNNGPPGVDGDPGDPGPPGD
PGLPGPPGDRTNRVTKALPGPKGVKGVLGLPGYDGRFGIKGVKGEPCYECTGPGPAGLPG
PRGPPGSPGYNQTPGDKGDPGSPGHRGSLGRPGPVGVPGLPGLAGQKGESQVYNTPRIKG
ERGDPGQPGLPGTSGIPGFPGKPGHKGNRGPPGDAYPFPGFVGDRGFPGEPGPTGRLGPA
GLPGPVGYGPTGQPGYKGNIGVPGLPGEPGSPGQKGEPLIHTKGLPGPRGFPGQTGSPGN
PGHEGVPGTSGSPGPPGQKGERGHLSLPGNQGIQGQKGEKGQPGLPGPPGRGLSGRPGLQ
GPPGAPGLKGDGQWEKRGIPGLPGATGEPGAQGPSGDPGGSGRPGSPGPTGTPGFPGEKG
SKGIIGPPGLPGNKGLCNISGPAGFPGPDGYPGLPGQNGLPGEKGTQGLPGSGHPGRCGE
TGDPGPSVLGFQGPPGRKGFKGQNGVHGQPGPKGDRGPDGLPGYGPEGLPGPIGPPGQLG
SPGRDGAKGAQGPPGIPGEPGLRGPSGPLLGTQGDTGVSGYAGQSGCFGDPGNIGPKGRR
GLEGPRGSAGPRGPPGDPGTDGFKLSMGTPGPPGLPGDPGVLGLPGKKGLKGEPGIRGGP
GFPGSPGSTGHKGIKGEPCDCEHGPPGEVGQKGEPGLTNTTGMKGQKGQPGVSGRAGISG
SDGPKGNPGPDGENGPQGPKGAKGSTGPPGIKGHPGPHGPPGIQGLPGVQGYPGPKGNQG
RDGIPGPPGQKGDTITIATPGRRGDTGRPGPPGNPGPPGLSMTGSPGPTGDRGTPGQCGT
NGLRGTPGREGTCIPGSKGDQGLPGNPGLPGSPGIPGPSYPREPGLKGDRGNMGHSGNPG
HSGPPGDPGPLGPAGEKGRPGGPGPKGDFGPPGFQGPPGCIGDPGYIAGPQGPPGSKGFP
GPPGRKGEPNFPRFKPEPGPPGLPGLPGNRGPAGISGLLGPPGLQGKPGIKGAHGSSPIG
PPGFPGIKGDKGTAGLPGLEGRPGNPGHKGLPGLPGLPGRDLPCFVDSFMITRHSQSIHV
PDCPYGSTLIYSGYSLLFINGNERTHGQDLGTMGSCLPRFSTMPFLFCDTENNCRYASRN
DYSYWLSTDTPVPTDMVSVTEDRLASYISRCSVCEMTSNVLAVHSQTTLIPQCPQGWESL
WTGYSFVMQTGAGAGGSSQPLVSPGSCLEHFHQVPFIECHGKGTCNYYPDSYSYWLASVD
PNNMFRKPVPQTVKGDSLQSVISRCRVCRKPF
NT seq
4959 nt
NT seq
+upstream
nt +downstream
nt
atgagaagaccagtggttcctgttcctgtggtcctttgtgctgtgatgctgatgagcgct
ggggctaaaaactgtgtttgcaatggacaattgcgttgtcactgtgaaggagtgaagggc
aacaggggcgacaaaggttttcagggaattcaaggtcttccaggaccagagggccgtccg
ggatcagatggtcgtgttggaccaatgggatttctgggaaacactgggcctgatggacct
gcggggccaaaaggagatctgggacctgaaggtaaagaaggatttgctggggcccatggt
tttcctggtttaccaggtgtacaaggacctccaggccctccgggtttcccaggatgcaac
ggaaccaaaggagatgatggacaccctggtgttcctggagcaaatggccggaatggaaac
ccgggcccaccaggtttacgtggaccaaagggcgatactttggtgtctgagccttttgtg
gggccacctggtagaaaaggagacccgggtctgcaaggtgagcctggaaatccaggagaa
cctggagaccgtggaccaagaggatcagacggacattccggccgtccagggcctccagga
tccaagggtcaggaaggcactgggggttttccaggacctcgtggaccaaagggcagaaca
ggaccatctggatcaccagggccaccaggacggattagggagttttccactgagacacag
gaccaaattgagggagtgaagggggataaaggggacgcaggagaaaagggctgcaagggt
gaaagaggggccgtcgacgaaagctctcacatcaaagggtcaaaaggagagattggacag
caaggcccggaaggaaaacctggtaagaacggtgaccctggcccagctggacatcaggga
agacctggtcctagaggtgatccagggtatccagggagacaaggaggagtgggggaaaag
ggagcgcaaggttcaacaggtcaacctggaaaagtgtacggaactgttcctgtgccactt
aaaggatatcgtggagaccctggaccccctggtcatcaaggaccccctggacatcaaggt
gttgtgggttttcctggaccagatggacttccaggccgtgtatctgggattcctggacca
ggtccacaaggtcctcctggattcataggtccaaagggagaacctggagagcctgcacaa
tataataacggaccgccaggtgtagacggagatcccggtgatccaggacctcccggtgat
ccaggcctacctggacccccaggagacagaactaacagagtaaccaaagctctaccagga
ccaaagggagtgaagggtgtccttggacttccaggttatgatggaagatttggaatcaaa
ggagtgaagggggagccatgttatgaatgtacaggaccaggaccagcaggactaccaggt
cctcgtggtccacctggaagtccaggctacaatcagacaccaggggacaaaggtgatcca
ggatccccaggacacagaggttcacttggaagaccaggtccagttggtgtaccaggatta
cccggccttgcagggcaaaagggagaatcccaggtctataacacacctagaattaaggga
gagagaggcgacccaggacagcctggcctacctggtactagtggtataccagggttccct
gggaaacctggtcataaaggcaaccgaggccctccaggggacgcttatccatttccaggt
tttgttggagaccgtggtttcccaggtgaaccaggaccaaccggcagactaggaccagct
ggcctcccagggcctgtaggatatgggcctactggacaaccaggatataaggggaatatt
ggtgtacctggtttgccaggagagccaggaagtccaggccagaaaggagaaccactcatt
cacaccaaaggacttcctggaccacgtggatttccaggccaaactggttcacctggaaac
ccaggtcacgaaggagtgccaggaacctcaggatcaccaggtccacctggacagaagggg
gaacgaggtcatctgtcacttccaggaaatcagggaatccaaggacaaaaaggagaaaaa
gggcagccaggtcttcctggtcctcctggtaggggtctgtctggccgacctggtctacaa
ggccctcctggagctccaggattaaagggtgatggccagtgggaaaaacgtggtatccca
ggtctcccaggggccacaggtgaacctggagctcaggggccttcaggagatcctggaggt
tctggtcgacctgggagccctggtccaactggaaccccaggttttccaggagaaaaagga
agcaaaggtatcataggccccccaggactgcctgggaacaagggcttatgtaacatatct
ggaccagccggatttccaggaccagacggttatccaggattaccaggacagaatggctta
cctggagagaagggaactcaaggtcttccagggtcaggtcatccaggtcggtgtggtgag
actggtgaccccggtccatcagtgctaggttttcagggacctcctggacgaaaaggattt
aagggacaaaacggtgtacatggacaaccaggtccaaaaggagaccgtggaccagatggt
ttaccaggatatggaccagaagggctgcctggacctataggaccaccaggacagttaggt
tcccctggtcgtgatggagctaagggtgcccaaggtcctccaggcatccctggggagcca
ggactgaggggtccttctggccctctattagggacacaaggagacactggtgtttcagga
tacgctggtcaatctggttgctttggagatcctggaaatattgggccaaaaggacgcaga
ggcttagaaggaccgagaggaagtgctggaccaagagggcctccaggggatccaggcact
gatggattcaagttgtcaatgggtactccaggacctcctggacttccaggagatccagga
gtcttaggactacctggtaaaaaaggacttaagggagaaccaggaatcagaggagggccg
ggcttccctggttcaccaggttctactggccacaaaggaattaaaggagaaccatgtgac
tgtgaacatggaccgcctggagaagtaggacaaaagggtgaaccaggactaacaaatact
actgggatgaagggtcaaaaaggtcaacctggtgtcagtggaagagcaggcatatcagga
agtgatggaccaaaggggaatccaggacctgatggagaaaatggtccccaaggtcctaaa
ggagctaaaggctcaactggacctcctggaataaaaggacatccaggacctcatggtcca
ccagggatccaaggactaccaggtgtccagggttatccgggcccaaaaggcaaccaaggc
cgggatgggatccctggtccacctggacagaaaggcgacaccattactatagcgacacca
ggaagacgtggtgacacaggtcgaccaggccccccggggaaccctggtccacctggcctg
tccatgacaggaagtccaggacctacaggagacagaggaactccaggtcaatgtgggacc
aatggcttaaggggaacacctggaagagaagggacatgtattcctggatcaaaaggagat
caaggcttacctggaaatcctggtctgccaggcagtcctggcattccaggaccttcatat
cccagagaacctggattaaaaggagacagagggaacatgggtcattcaggaaacccaggt
cacagtggaccaccaggagatccaggtcccctaggaccggctggtgaaaaaggcagacca
ggaggcccggggcctaaaggtgattttggtcctccaggattccaagggcctccaggttgt
attggagaccctggatacatcgcaggcccacagggtcctcctggatcaaaaggtttcccc
ggacctcctgggcgaaaaggtgaaccaaactttcccagattcaaacctgagccaggacct
cctggattacctggtctccctgggaaccgaggacctgcagggatcagtggactgttagga
ccgcctggacttcaaggaaagccaggcattaaaggagcacatggttcaagtccaattgga
cctccaggttttcccggcatcaaaggagataaaggaacagcaggacttccaggtttagaa
ggaagacctggaaacccaggccacaaaggacttccaggacttccaggacttccaggaaga
gatttgccatgttttgttgacagctttatgataaccagacacagtcagagcattcacgta
ccagactgtccttatggctccaccctcatctactctggttactcccttctcttcatcaat
ggaaatgagcgaactcacggtcaggaccttggcacaatgggaagctgcctccctcgtttc
tccaccatgcccttcctgttctgtgacacagaaaataactgtcgctatgcctctcgtaat
gactactcatactggctgtctactgacactcctgtgccaaccgacatggtctctgtcaca
gaagataggctggcatcctacatcagcaggtgctcagtgtgtgaaatgacttccaatgtc
ctggcggtccacagccagaccactctgatacctcagtgtccccaaggatgggaatctctg
tggactggctactcatttgtcatgcaaacaggcgctggtgccggtggctcctcacagcct
ctggtttctcctggctcctgcctagaacatttccaccaagtgcccttcattgaatgtcat
ggcaaaggaacatgtaactactatcccgactcctatagctactggctggcctctgtggat
cccaacaatatgtttaggaaaccagttccacagaccgtgaagggagactctttacaaagt
gtcatcagccgatgccgggtctgtagaaaaccattttag
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integrated database retrieval system
