Cynoglossus semilaevis (tongue sole): 103396029
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Entry
103396029 CDS
T04866
Name
(RefSeq) collagen alpha-1(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04510
Focal adhesion
csem04512
ECM-receptor interaction
csem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103396029
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103396029
09142 Cell motility
04820 Cytoskeleton in muscle cells
103396029
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csem04147
]
103396029
00536 Glycosaminoglycan binding proteins [BR:
csem00536
]
103396029
Exosome [BR:
csem04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103396029
Glycosaminoglycan binding proteins [BR:
csem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103396029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103396029
NCBI-ProteinID:
XP_008332175
UniProt:
A0A3P8WHU6
LinkDB
All DBs
Position
20:3397394..3414115
Genome browser
AA seq
1652 aa
AA seq
DB search
MRRPVVPVPVVLCAVMLMSAGAKNCVCNGQLRCHCEGVKGNRGDKGFQGIQGLPGPEGRP
GSDGRVGPMGFLGNTGPDGPAGPKGDLGPEGKEGFAGAHGFPGLPGVQGPPGPPGFPGCN
GTKGDDGHPGVPGANGRNGNPGPPGLRGPKGDTLVSEPFVGPPGRKGDPGLQGEPGNPGE
PGDRGPRGSDGHSGRPGPPGSKGQEGTGGFPGPRGPKGRTGPSGSPGPPGRIREFSTETQ
DQIEGVKGDKGDAGEKGCKGERGAVDESSHIKGSKGEIGQQGPEGKPGKNGDPGPAGHQG
RPGPRGDPGYPGRQGGVGEKGAQGSTGQPGKVYGTVPVPLKGYRGDPGPPGHQGPPGHQG
VVGFPGPDGLPGRVSGIPGPGPQGPPGFIGPKGEPGEPAQYNNGPPGVDGDPGDPGPPGD
PGLPGPPGDRTNRVTKALPGPKGVKGVLGLPGYDGRFGIKGVKGEPCYECTGPGPAGLPG
PRGPPGSPGYNQTPGDKGDPGSPGHRGSLGRPGPVGVPGLPGLAGQKGESQVYNTPRIKG
ERGDPGQPGLPGTSGIPGFPGKPGHKGNRGPPGDAYPFPGFVGDRGFPGEPGPTGRLGPA
GLPGPVGYGPTGQPGYKGNIGVPGLPGEPGSPGQKGEPLIHTKGLPGPRGFPGQTGSPGN
PGHEGVPGTSGSPGPPGQKGERGHLSLPGNQGIQGQKGEKGQPGLPGPPGRGLSGRPGLQ
GPPGAPGLKGDGQWEKRGIPGLPGATGEPGAQGPSGDPGGSGRPGSPGPTGTPGFPGEKG
SKGIIGPPGLPGNKGLCNISGPAGFPGPDGYPGLPGQNGLPGEKGTQGLPGSGHPGRCGE
TGDPGPSVLGFQGPPGRKGFKGQNGVHGQPGPKGDRGPDGLPGYGPEGLPGPIGPPGQLG
SPGRDGAKGAQGPPGIPGEPGLRGPSGPLLGTQGDTGVSGYAGQSGCFGDPGNIGPKGRR
GLEGPRGSAGPRGPPGDPGTDGFKLSMGTPGPPGLPGDPGVLGLPGKKGLKGEPGIRGGP
GFPGSPGSTGHKGIKGEPCDCEHGPPGEVGQKGEPGLTNTTGMKGQKGQPGVSGRAGISG
SDGPKGNPGPDGENGPQGPKGAKGSTGPPGIKGHPGPHGPPGIQGLPGVQGYPGPKGNQG
RDGIPGPPGQKGDTITIATPGRRGDTGRPGPPGNPGPPGLSMTGSPGPTGDRGTPGQCGT
NGLRGTPGREGTCIPGSKGDQGLPGNPGLPGSPGIPGPSYPREPGLKGDRGNMGHSGNPG
HSGPPGDPGPLGPAGEKGRPGGPGPKGDFGPPGFQGPPGCIGDPGYIAGPQGPPGSKGFP
GPPGRKGEPNFPRFKPEPGPPGLPGLPGNRGPAGISGLLGPPGLQGKPGIKGAHGSSPIG
PPGFPGIKGDKGTAGLPGLEGRPGNPGHKGLPGLPGLPGRDLPCFVDSFMITRHSQSIHV
PDCPYGSTLIYSGYSLLFINGNERTHGQDLGTMGSCLPRFSTMPFLFCDTENNCRYASRN
DYSYWLSTDTPVPTDMVSVTEDRLASYISRCSVCEMTSNVLAVHSQTTLIPQCPQGWESL
WTGYSFVMQTGAGAGGSSQPLVSPGSCLEHFHQVPFIECHGKGTCNYYPDSYSYWLASVD
PNNMFRKPVPQTVKGDSLQSVISRCRVCRKPF
NT seq
4959 nt
NT seq
+upstream
nt +downstream
nt
atgagaagaccagtggttcctgttcctgtggtcctttgtgctgtgatgctgatgagcgct
ggggctaaaaactgtgtttgcaatggacaattgcgttgtcactgtgaaggagtgaagggc
aacaggggcgacaaaggttttcagggaattcaaggtcttccaggaccagagggccgtccg
ggatcagatggtcgtgttggaccaatgggatttctgggaaacactgggcctgatggacct
gcggggccaaaaggagatctgggacctgaaggtaaagaaggatttgctggggcccatggt
tttcctggtttaccaggtgtacaaggacctccaggccctccgggtttcccaggatgcaac
ggaaccaaaggagatgatggacaccctggtgttcctggagcaaatggccggaatggaaac
ccgggcccaccaggtttacgtggaccaaagggcgatactttggtgtctgagccttttgtg
gggccacctggtagaaaaggagacccgggtctgcaaggtgagcctggaaatccaggagaa
cctggagaccgtggaccaagaggatcagacggacattccggccgtccagggcctccagga
tccaagggtcaggaaggcactgggggttttccaggacctcgtggaccaaagggcagaaca
ggaccatctggatcaccagggccaccaggacggattagggagttttccactgagacacag
gaccaaattgagggagtgaagggggataaaggggacgcaggagaaaagggctgcaagggt
gaaagaggggccgtcgacgaaagctctcacatcaaagggtcaaaaggagagattggacag
caaggcccggaaggaaaacctggtaagaacggtgaccctggcccagctggacatcaggga
agacctggtcctagaggtgatccagggtatccagggagacaaggaggagtgggggaaaag
ggagcgcaaggttcaacaggtcaacctggaaaagtgtacggaactgttcctgtgccactt
aaaggatatcgtggagaccctggaccccctggtcatcaaggaccccctggacatcaaggt
gttgtgggttttcctggaccagatggacttccaggccgtgtatctgggattcctggacca
ggtccacaaggtcctcctggattcataggtccaaagggagaacctggagagcctgcacaa
tataataacggaccgccaggtgtagacggagatcccggtgatccaggacctcccggtgat
ccaggcctacctggacccccaggagacagaactaacagagtaaccaaagctctaccagga
ccaaagggagtgaagggtgtccttggacttccaggttatgatggaagatttggaatcaaa
ggagtgaagggggagccatgttatgaatgtacaggaccaggaccagcaggactaccaggt
cctcgtggtccacctggaagtccaggctacaatcagacaccaggggacaaaggtgatcca
ggatccccaggacacagaggttcacttggaagaccaggtccagttggtgtaccaggatta
cccggccttgcagggcaaaagggagaatcccaggtctataacacacctagaattaaggga
gagagaggcgacccaggacagcctggcctacctggtactagtggtataccagggttccct
gggaaacctggtcataaaggcaaccgaggccctccaggggacgcttatccatttccaggt
tttgttggagaccgtggtttcccaggtgaaccaggaccaaccggcagactaggaccagct
ggcctcccagggcctgtaggatatgggcctactggacaaccaggatataaggggaatatt
ggtgtacctggtttgccaggagagccaggaagtccaggccagaaaggagaaccactcatt
cacaccaaaggacttcctggaccacgtggatttccaggccaaactggttcacctggaaac
ccaggtcacgaaggagtgccaggaacctcaggatcaccaggtccacctggacagaagggg
gaacgaggtcatctgtcacttccaggaaatcagggaatccaaggacaaaaaggagaaaaa
gggcagccaggtcttcctggtcctcctggtaggggtctgtctggccgacctggtctacaa
ggccctcctggagctccaggattaaagggtgatggccagtgggaaaaacgtggtatccca
ggtctcccaggggccacaggtgaacctggagctcaggggccttcaggagatcctggaggt
tctggtcgacctgggagccctggtccaactggaaccccaggttttccaggagaaaaagga
agcaaaggtatcataggccccccaggactgcctgggaacaagggcttatgtaacatatct
ggaccagccggatttccaggaccagacggttatccaggattaccaggacagaatggctta
cctggagagaagggaactcaaggtcttccagggtcaggtcatccaggtcggtgtggtgag
actggtgaccccggtccatcagtgctaggttttcagggacctcctggacgaaaaggattt
aagggacaaaacggtgtacatggacaaccaggtccaaaaggagaccgtggaccagatggt
ttaccaggatatggaccagaagggctgcctggacctataggaccaccaggacagttaggt
tcccctggtcgtgatggagctaagggtgcccaaggtcctccaggcatccctggggagcca
ggactgaggggtccttctggccctctattagggacacaaggagacactggtgtttcagga
tacgctggtcaatctggttgctttggagatcctggaaatattgggccaaaaggacgcaga
ggcttagaaggaccgagaggaagtgctggaccaagagggcctccaggggatccaggcact
gatggattcaagttgtcaatgggtactccaggacctcctggacttccaggagatccagga
gtcttaggactacctggtaaaaaaggacttaagggagaaccaggaatcagaggagggccg
ggcttccctggttcaccaggttctactggccacaaaggaattaaaggagaaccatgtgac
tgtgaacatggaccgcctggagaagtaggacaaaagggtgaaccaggactaacaaatact
actgggatgaagggtcaaaaaggtcaacctggtgtcagtggaagagcaggcatatcagga
agtgatggaccaaaggggaatccaggacctgatggagaaaatggtccccaaggtcctaaa
ggagctaaaggctcaactggacctcctggaataaaaggacatccaggacctcatggtcca
ccagggatccaaggactaccaggtgtccagggttatccgggcccaaaaggcaaccaaggc
cgggatgggatccctggtccacctggacagaaaggcgacaccattactatagcgacacca
ggaagacgtggtgacacaggtcgaccaggccccccggggaaccctggtccacctggcctg
tccatgacaggaagtccaggacctacaggagacagaggaactccaggtcaatgtgggacc
aatggcttaaggggaacacctggaagagaagggacatgtattcctggatcaaaaggagat
caaggcttacctggaaatcctggtctgccaggcagtcctggcattccaggaccttcatat
cccagagaacctggattaaaaggagacagagggaacatgggtcattcaggaaacccaggt
cacagtggaccaccaggagatccaggtcccctaggaccggctggtgaaaaaggcagacca
ggaggcccggggcctaaaggtgattttggtcctccaggattccaagggcctccaggttgt
attggagaccctggatacatcgcaggcccacagggtcctcctggatcaaaaggtttcccc
ggacctcctgggcgaaaaggtgaaccaaactttcccagattcaaacctgagccaggacct
cctggattacctggtctccctgggaaccgaggacctgcagggatcagtggactgttagga
ccgcctggacttcaaggaaagccaggcattaaaggagcacatggttcaagtccaattgga
cctccaggttttcccggcatcaaaggagataaaggaacagcaggacttccaggtttagaa
ggaagacctggaaacccaggccacaaaggacttccaggacttccaggacttccaggaaga
gatttgccatgttttgttgacagctttatgataaccagacacagtcagagcattcacgta
ccagactgtccttatggctccaccctcatctactctggttactcccttctcttcatcaat
ggaaatgagcgaactcacggtcaggaccttggcacaatgggaagctgcctccctcgtttc
tccaccatgcccttcctgttctgtgacacagaaaataactgtcgctatgcctctcgtaat
gactactcatactggctgtctactgacactcctgtgccaaccgacatggtctctgtcaca
gaagataggctggcatcctacatcagcaggtgctcagtgtgtgaaatgacttccaatgtc
ctggcggtccacagccagaccactctgatacctcagtgtccccaaggatgggaatctctg
tggactggctactcatttgtcatgcaaacaggcgctggtgccggtggctcctcacagcct
ctggtttctcctggctcctgcctagaacatttccaccaagtgcccttcattgaatgtcat
ggcaaaggaacatgtaactactatcccgactcctatagctactggctggcctctgtggat
cccaacaatatgtttaggaaaccagttccacagaccgtgaagggagactctttacaaagt
gtcatcagccgatgccgggtctgtagaaaaccattttag
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