Cynoglossus semilaevis (tongue sole): 103396081
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Entry
103396081 CDS
T04866
Symbol
rc3h1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
csem
Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csem03000
]
103396081 (rc3h1)
04121 Ubiquitin system [BR:
csem04121
]
103396081 (rc3h1)
Transcription factors [BR:
csem03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
103396081 (rc3h1)
Ubiquitin system [BR:
csem04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103396081 (rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
103396081
NCBI-ProteinID:
XP_008332260
LinkDB
All DBs
Position
20:complement(3471531..3481390)
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AA seq
1122 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNTALLQLVGGQVPKAQPVALISSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSILSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGPGGLLSDEGLPLDVAVTRKPS
PLSNGSVVPPLPQLIPRGTDAVPYELLRKPVKLDAGSPSAPGSPPDGLDPVPKSGMSLPP
HAMTHPRMSADHLSGVRHMPVVPRGSPVYPHQQLPELRYDTRPPSVTQCENPQYPAGYPY
EQPPQYVPRDYIRNPPPQNESGPAYQDGYGYGHPERPYQAPHAGSSFSYPHMPHAYDRNR
HVTYTGPPPPPQPYPSQRDNLVRMSPAPLDVPPPSVGQANSLYHQEPSSRDRYPPDGYYP
SSVQAPPMRGYVSRGPSYSGPPLSLDYLHRRRQELLSQLEERKVISPPPFAASPTLSHSF
PSDYPPEYGEENSKTIVKCREPDYAGQYSPWSCETIGSYIGTKDAKPKDVMVSGTMEMMN
VEAKSLREPSLEAPRRGAEAKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTCPVQAMAT
APQNPNSKHMAMPAAEYTYGSHGGWGGAAYSSHQPATSSQGHFSERLPLAAQDREQLKIE
LQQVNQQITQQTQMHSMEAASNSLLLQREASALAGQSVQSCQGQAAVAAQQQQTKWPTGG
AAASTVSSEQLSLELHQVEREIGKRTREMAMENQGLHDVQQYKLKPTENGQPEHKAQLEE
ISMALGEVSNGSSSLQESAVGGSMLSLTNKTSAMSLCSEPGA
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaagcaccacaatggacagagttcctgctgtgcccaatctgcacacagaca
tttgaggagactgttcgacgacccattagtttgggctgtggacatactgtctgcaagatg
tgcctgaacaagttgcaccgaaaggcctgtccctttgaccagacagccatcaacacagac
attgagcagttacctgtaaacacggctctgctgcagctggtgggaggccaggttcctaaa
gctcagcctgttgccttgatttccagtcctgaggactcgcagcattatgaggaggccagg
cagtgtgtggaggaactggctctctacctcaaaccactcagtaacaccagaggtgtgggt
ctgagcagcacagcccagagcatactgagtcgacccatgcaaaggaaactggtaaccctt
gtccactgccagctagtggaggaggagggccgtgtcagagccatgagagctgcccgctct
cttggtgagcgcaccgtcaccgagctcatcttacagcatcagaatccacaacagctctct
tccaatttgtgggctgccgttcgtgcacggggatgtcagtttcttggcccagcaatgcaa
gaggaggctttgaagttggttcttctagctctagaagatggttctgctctgtcaaggaag
gtgttggttctctttgttgtccagaggcttgaaccacgctttcctcaggcctctaaaacc
agtataggtcatgtggtgcagctcctctacagagcctcctgcttcaaggtgactaaacgt
gatgaagattcatccctgatgcagctaaaagaagagtttcgtacttacgaagctctgagg
cgtgagcacgattctcagattgttcagatcgccatggaaggagggctccgaatcgcacca
gatcagtggtcttctctcttgtatggagatcagtctcacaagtcacacatgcagtctatt
atcgataagctgcagaccccagcatcctttgcgcagagtgtccaggaattgacaattgca
ctgcaaagaactggtgacccagccaacctcaacagactgcggccacatttggagctcttg
gccaacattgatcccagtcctgatgcccctcctccaacttgggagcagcttgaaaaaggt
ttggtggcagtgaagacagtggtgcacggcctggtggacttcatccagaaccacagcaag
aagggtgctgacccacaacagcctcctcagcacagcaaatacaagacatacatgtgtcga
gacatgaagcaaaaaggaggttgtcctcgtggagccagctgtacctttgcacactctcag
gaagaactggagaagtatcgtaaaatgaataaacgtctggcagctcgcctccctggccca
ggaggactcctgtcagatgaaggccttcctcttgatgtagcagtaactcgaaaaccgtca
cccctttccaatggcagtgttgttccacctttgccccagcttattcctcgtggtactgat
gcggttccttacgagctcttgcgcaaaccagtcaaattggatgcaggaagtcccagtgcc
cctggatcgccaccagatggtcttgaccctgtacccaaatctgggatgtcgcttccacca
catgccatgacccatcccaggatgtcggccgaccacctgtctggtgtaaggcatatgcca
gttgtacccagaggttctccagtgtacccacatcaacagcttcctgagctgcgctatgac
acccgtccaccctctgttactcagtgtgaaaacccacaataccctgcaggatacccatat
gagcagccaccgcagtacgttcctcgggattacatacgtaatcctcccccccaaaatgag
tcaggacctgcttaccaggatggttatggttatggtcaccccgagcgcccctaccaggcc
cctcacgcagggtcatccttctcttatccccatatgcctcatgcctatgaccgaaatcgc
catgtaacctacactggtccaccacctcctccacagccttatccatctcagcgggataac
ctggtcagaatgagtcctgcacctttagatgtccccccaccatcggttggtcaggctaac
tcactctatcaccaggaaccaagtagcagggacagatacccaccagatggctactatcct
tcaagtgtccaggctccacctatgaggggttacgtcagcaggggtccgtcatatagtggt
ccaccactcagtctggactatctgcatcgacgacgccaggagctgctgtctcagcttgag
gaaagaaaggtcatctctccaccaccattcgctgcctcacccactctttctcattccttc
cctagtgactacccccctgagtatggcgaggagaactccaaaaccattgtgaaatgccga
gaacctgattatgcaggacagtactctccctggtcctgtgaaactattggctcctatatt
ggcacaaaggatgccaaacccaaagatgttatggtttctggcaccatggagatgatgaat
gtggaggccaagagtcttcgagaaccttctttagaggctccacgcaggggtgcagaagca
aaggacgatgaccccataattccatttggcccccagcccacggtatcacgttttggggcc
atctcacgcacctcaaagacaggctaccagaccacctgcccagtgcaggcaatggcaacc
gctcctcagaatcctaattcaaaacatatggctatgccagctgcagaatatacatatgga
agccatggaggttggggtggagcagcatactcctcccaccagcctgccacctcctctcag
ggacacttcagtgagcgccttcccttagcagcccaagacagagaacagttaaaaattgag
ctacagcaggttaaccagcagatcacccagcagacccagatgcacagtatggaggctgcc
agtaattctttactgctgcagagagaggccagtgcattggcaggtcagtctgtgcagtcc
tgccaaggccaggctgcagtagcagctcagcaacaacagactaagtggccaacaggggga
gcagctgcctccactgtctccagtgaacagttaagcctggagctccaccaggtggagaga
gagattgggaaaaggacccgtgagatggctatggaaaaccaaggactacatgacgttcag
cagtacaagctgaaacctacagagaatggacaaccagagcacaaggctcagctggaggaa
atctccatggctcttggtgaggtgtcaaatggctccagcagtctgcaagaaagtgctgta
ggcgggtccatgctgtcactgaccaataagacgtctgcaatgagcttgtgttccgaacca
ggtgcc
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integrated database retrieval system
