Cynoglossus semilaevis (tongue sole): 103396226
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Entry
103396226 CDS
T04866
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain
KO
K06238
collagen type VI alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04510
Focal adhesion
csem04512
ECM-receptor interaction
csem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103396226 (col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103396226 (col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
103396226 (col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csem04147
]
103396226 (col6a2)
00536 Glycosaminoglycan binding proteins [BR:
csem00536
]
103396226 (col6a2)
Exosome [BR:
csem04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
103396226 (col6a2)
Glycosaminoglycan binding proteins [BR:
csem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103396226 (col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
103396226 (col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
103396226
NCBI-ProteinID:
XP_016897929
LinkDB
All DBs
Position
20:6007443..6026406
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AA seq
1011 aa
AA seq
DB search
MSVLQKIGLCLLLGALAHGQASECSKKNECPIDVYFTIDTSETIALQEPPPGSLVESIKK
FTEQFVQRLDDAEIRGSVNINWNIGGLHFSMRQQVFSAIGPKNDFITRLRGIRYLGKGTF
IDCALANMTQEMLRSPTSPKALRFAVVITDGHVTGNPCGGIKVAAERARDEGIKIFAVAA
SNNIEETGLREIANSPAMVFRRDFMAVDLSQGKAIIQTDTIDRIVNTMKHIAYVECYKVS
CLETPGPPGPKGHRGQKGAKGDNGEPGTKGERGRPGDPGIEGPIGQPGIKGEKGVLGDKG
EFGAQGKKGVGGIPGRDGTDGQKGKIGRIGAPGCKGDPGDKGPDGHPGDVGERGPAGTDG
EKGDFGRPGRPGPPGTEGEPGPKGERGSSGSPGDPGLKGNPGNPGRAGTKGELGRRGEYG
PKGSSGPPGAIGEKGEMGSEGLRGLSGESGNKGAKGDNGLPGPRGAPGGPGESGKVGSRG
DPGDAGPRGEPGQAGPKGDAGRPGFNYPGPRGLTVTPEKYCNQTRGSRGDCGHKGEPGGK
GTPGEPGEPGPHGEPGLRGTRGELGRDGDPGPEGDPGLTECDVMNYIRETCGCCDCEKRC
GALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSFSKDPESESGTRVGVVQYSHNGTF
QAIRLNDPKIDSLTAFKDAVKRLEWIAGGTWTPSALKYAYDHLIRDSRRAKANVTVVVIT
DGRFDPRDDDSLLTYLCSDPSVDVSAIGIGDMFDQIEENESLKSIACQRDGRVLGMRRFA
DLVAEEFIDKIETVLCPEPVIICPDLPCKSEPAVASCVQRPVDVVFMLDGSERMGLENHR
RAKEFIENVARRLTLANGPTDERNARLALVQYGSPTEQRVEFPLTHNLTVISDTLANVNY
MDSSSALGSAIIHAVNNVVILQRGERKARRNAEVAFVFITDGITSTEQLEEGVTAMRRAE
GVPTVIAMGTDTDEEVLRKVSLGDMSAIFRGDDYNILNKPSFFERFVRWIC
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgttacagaaaattgggctctgtcttctcctgggagccctggctcatggccaa
gcgtcagagtgcagtaagaaaaacgaatgtcccatcgacgtgtacttcaccattgacaca
tccgagaccatcgctcttcaggaaccccctcctggatccctcgtggagagcatcaagaaa
ttcacggaacagtttgtacagcgtttggacgacgctgaaatccgaggttccgtgaacatc
aactggaacattggtggacttcacttctctatgaggcagcaggtcttcagtgccatcgga
cccaaaaatgacttcattactcgtttaagaggaatcaggtacctgggtaagggcaccttc
attgactgtgccctggccaacatgacccaggaaatgttgcgttcccccacctcccccaag
gccctgcgattcgcagtggtcatcactgacggtcacgtgactggaaacccgtgtggtggc
atcaaggtggcagcagagagagctcgagatgagggaatcaagatatttgctgtggctgca
tctaataatatagaagagaccggtctgagggagattgctaattctcctgccatggtcttc
aggagggacttcatggctgtagatcttagccagggcaaagccatcatacagacggacacc
atcgaccgcatcgttaacacgatgaaacatatagcgtatgtggagtgctataaggtttcc
tgtcttgaaacacccgggcctcctggtccaaaaggccacagaggacaaaagggtgctaaa
ggagacaatggtgaaccaggaacaaaaggagaaagaggtcgtccaggggatccaggtatt
gagggtcccatcggtcagcccggtatcaaaggagaaaaaggtgtattaggtgataaggga
gaatttggagctcaagggaaaaagggagttggtggaattccaggacgcgacggaacagat
ggacaaaagggtaaaattgggcgaattggtgctcccggctgtaaaggagaccctggagac
aagggtcccgatggtcaccccggagatgttggtgaacgtggccctgccggaactgatggc
gagaagggagactttggacgtccggggcgacctggtccccctggaaccgaaggagagcct
ggaccaaagggggagaggggaagttctggatcacctggtgaccctggactaaaaggaaac
ccaggaaatcctggacgtgcaggaaccaaaggagagctgggaagaagaggggagtatgga
ccaaagggctcttctggaccacctggtgcaattggagagaagggtgagatggggtcagag
ggcctgagaggactttcaggtgaatcaggaaacaaaggagctaagggcgacaatggtctt
ccaggccccagaggagcaccaggaggacccggagaatctggaaaagttggttccagaggt
gaccctggtgatgctggaccaagaggtgaacctggacaagctggaccaaagggagatgca
ggaagaccgggctttaactatcctggaccaagaggattaacagtaactccggaaaaatac
tgtaatcaaacgcgtggcagtagaggagactgtggtcacaaaggagagcctggaggtaaa
ggaaccccaggagaacctggagagccaggacctcatggggaacctggcctcagaggtaca
agaggagagttgggccgtgacggagatcctggacctgagggagatcctggcctgactgaa
tgtgatgtcatgaactacatcagggagacttgcggttgctgcgactgcgagaaacgctgc
ggagccttggacattgtgttcgtgattgacagttccgagtccgtgggattgaccaatttc
accctggagaagaactttgtcattaataccatcaacagactgggctccttctccaaagat
ccggagtcagagtcaggtaccagagtaggggttgtccagtacagtcacaacggaaccttc
caggccatcagactcaatgatcctaagattgactcattgaccgctttcaaggatgcggtg
aagcgtttggagtggatcgccggaggaacgtggactccctcagccctgaaatatgcctac
gatcacctgatcagggacagccgcagagcaaaggccaatgtcaccgttgtcgtcatcacc
gacggacgctttgaccccagagacgatgactcgcttctcacctacctctgcagtgatccg
agtgtcgacgtgagtgccatcggtatcggagacatgttcgaccagatcgaggagaacgag
agtctgaagagcatcgcctgtcaaagggacggcagggtcctgggaatgaggcgctttgcc
gacctagtggctgaggaatttatcgacaagatcgagactgtgctctgccctgagcctgtc
attatttgccccgatctgccttgtaaatcagagccggccgtggccagctgtgtgcagagg
ccggtggacgtggtgttcatgttggatggttccgaaaggatgggactggagaaccaccgg
cgggccaaggaattcattgagaacgtggcccgtcgccttacgctggccaacggcccgacg
gatgagaggaacgcccgcctggctttggtgcagtacggcagtcccacggagcagagagtg
gagttcccgctcacgcacaatctcacggtgatctctgatacgctggcaaacgttaactac
atggactcttcgtccgccctgggcagcgccatcatccatgctgtcaacaatgtggtgatt
ttacagcggggagaacgcaaggcgcgccgcaacgcggaggtcgcctttgtgttcatcacc
gatggcatcacctcaactgagcagctggaggagggcgtgaccgccatgaggcgagcagaa
ggcgttccgacagtgattgccatgggaacagacacagacgaggaggtgctgcgaaaggtg
tcactaggagacatgtcagccatcttcagaggggacgactacaacatcctgaacaaaccc
tctttctttgagcgcttcgtccgctggatatgctag
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