Cynoglossus semilaevis (tongue sole): 103396659
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Entry
103396659 CDS
T04866
Symbol
xrn1
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03008
Ribosome biogenesis in eukaryotes
csem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103396659 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
103396659 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csem03019
]
103396659 (xrn1)
03009 Ribosome biogenesis [BR:
csem03009
]
103396659 (xrn1)
03016 Transfer RNA biogenesis [BR:
csem03016
]
103396659 (xrn1)
03036 Chromosome and associated proteins [BR:
csem03036
]
103396659 (xrn1)
Messenger RNA biogenesis [BR:
csem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103396659 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
103396659 (xrn1)
Ribosome biogenesis [BR:
csem03009
]
Eukaryotic type
Pre-60S particles
RNases
103396659 (xrn1)
Transfer RNA biogenesis [BR:
csem03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
103396659 (xrn1)
Chromosome and associated proteins [BR:
csem03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103396659 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
SpoIIE_N
Motif
Other DBs
NCBI-GeneID:
103396659
NCBI-ProteinID:
XP_008333060
LinkDB
All DBs
Position
20:12685197..12700250
Genome browser
AA seq
1701 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALDKGE
VLPTEARFDSNCITPGTQFMVKLQEQLKYFVHNKLSTDKLWQNVRVYLSGHETPGEGEHK
IMEFIRSENRKPDHNPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSGIRNHIGSEYDLERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYKTYISIRPSMEGYLNENGHLNLRNFEKYMEKLSEFDREHFQEVFVDLK
WFESKVGNKYLNEAAGRAAEMEAETMNKAEDSSISLAALTAGVKMAEPEEEEDDIFETEF
RQYKRTYYMTKMGVDVVSDEFLAKQAKCYVEGIQWILHYYYHGVQSWSWYYPYHYAPFLS
DVRNISSLKLTFDLGKPFMPFEQLLAVLPAASSELLPEAYRHLMTSENSSIIEYYPLDFK
TDLNGKQQEWEAVVLIPFIDEKCLLAAMDPCNQRLTKEEKARNGHTECAVYTHDSEADFT
YPSSLPPTFPDIIHCHVRKAHIPMDAWHVTLDHVSRRLDRSALYFCGFPTLQHIKHKFYK
KKSGVVVFQQSSRGENMMLDILPREEEELTCEDAAAKVLGKSLFVNWPHLEEARIIAVSD
GDTKFRLDESAGDQRVYDRSSSPPPTKVCYLSDKEQKEWVKEVQGITEHFMKRKGIIVNE
TAVVLYGQLLTGRKYIPKANGAVELEKQWSKQVFPFAYQTVVKDIEAFYSSLTHFSSLDE
LFPPTTTVFMVGNPYYGAMGEVQDSSDVIKDGRVRVVFGVPPEPQLESLIQNQHKYCVKY
SPGYVLASHLGISSYLVSRFSGSIFIGRGSKRNPCGEQRANIGLNLKFNKKNEEVPGYTK
RTEREWLYSSAVEDLLAEYVERFAEVFNTVSRNSHDDVFYEDDIWPGEEQNGAEKVSEIT
SWLKSHPVSSISRSXQVLDAAIVEKIEEATDKTKVKKNIKKVRVTVKPHLLFRPLEQQQG
VVPDPDAEYRLFDRVINIRESFTVPLGLRGTIIGIKGADRDAEVLFEVLFDEEFAGGLII
RSTSHRGYRLPPCALINLSHGARMDHTSHKLTAIVKPQPVTGANFHSNRQLAGLNHSPQS
PFIPTQHQNKHNSTAKAASYSNRNAPFKGLPSKPQTKNKEECSNVWQSPQNVAPPNKPPA
HWHNHEGHSQPGRHQNPTPNKAAPTGGIRLLRKNENPDALFPAQNNSEKASAEFADLLAS
LKISKGNTQSPPPSAAAAEPTSHPEGPLSPQSFAMKGTMVLKEMLKIDSSSTETPPVQDD
TSTPTPGSRQQNRSRSSKKLAAKMNSPHGDMPLAPPPSANPNAMLGSKVSELTCVCVGLG
MAPPEFSFICNRQGLVVCQVKLSNGLMVHGPQSQSENESKEKAAFFALQRLNSMGSGFPL
TYPGVGQIRPPPLGPMTRMLNQQVLPHPGYVPPPLWGMTAPPHHHNKPFYGAAGTFPHGV
RPPPATTLPIGSHNQFIPLQVTKKRVSVNKKNQESREFYSAAHTVARNQSQRAQNQPDVQ
SQSRSEPQSRQMGRPHADAANSNASLSSVNQADGVSTTAAAAQTPPRQNNPAAQGHTPGS
ASKRRYRKLAVNFEAAKVSEG
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atgggggttccgaaattctaccgctggatctcagagcgctatccgtgcctcagtgaagtt
gtcaaggaacatcagatcccagagtttgacaatctgtatctggacatgaatgggattatc
caccagtgttcccatcccaatgacgaggacgtccactttcgcatctctgaggaaaagatt
tttgcagacatcttccattacctggaggttctcttcaggatcatcaagcctcgcaaggtt
ttcttcatggctgtggatggtgtggcaccaagagcaaagatgaaccagcagagaggacgg
agattcagatctgccaaagaagcagaagacaagataaagaaagccctggacaaaggagaa
gtccttcctacggaagctcgctttgattccaactgtatcacaccaggcactcagttcatg
gtgaaactgcaggagcagctgaagtattttgtccacaacaaactctccactgacaagttg
tggcagaacgtcagagtgtacctgtcaggtcatgagacaccgggggagggagaacataag
atcatggagtttattcgctcagagaacagaaaaccggatcacaatcccaacactcgccac
tgtctttatggcctggatgccgatctgataatgttgggtttaaccagccacgagccaaac
ttctctctcctcagagaagaggttcgatttggaggaaagaaatctcagaaaaggataacg
gcaccggaggagacgacctttcacctacttcacttgtccctgatgagggaatacatcgac
tacgaattttctgggattaggaatcacattggttcagaatatgacttggagcgaataata
gatgactggatcctcatgggcttcctcgtgggaaacgacttcatccctcatcttcctcat
ctccacatcaaccatgatgctctgcctctcttgtataagacctacatcagtatacggccc
agtatggagggttatctgaatgaaaatggccatctaaacctacgaaactttgagaagtac
atggagaaactttctgagtttgaccgtgaacattttcaggaggtgttcgtagaccttaag
tggtttgagagtaaagttggtaacaagtatttgaatgaggcagctggacgagctgctgag
atggaagcagaaaccatgaacaaagctgaggactcctccatctccctggcagctctaact
gcaggtgtaaagatggctgaacctgaggaggaggaggacgacatatttgaaactgagttc
agacaatacaaacggacttactatatgactaagatgggcgtggatgtggtgtctgatgag
tttcttgccaagcaggccaaatgttatgtagaaggcatccagtggattctccattattat
taccatggagttcagtcctggagttggtactatccctaccactatgccccctttctgtca
gatgtgaggaatatctcaagcttaaaattgacctttgacctgggcaaacccttcatgcct
tttgagcagcttttggctgttctgcctgctgccagctctgagctgcttcctgaagcttac
aggcatctgatgaccagtgaaaactctagcattattgagtattacccactggacttcaaa
accgacctcaatggcaagcagcaggagtgggaggctgtggttctcatccccttcattgat
gagaaatgtttactggcagccatggacccctgcaaccaaaggctgacaaaagaggaaaaa
gccaggaatggccacacagagtgcgctgtctacacccatgacagtgaggccgacttcacg
tatccgtcgtctctgccgccgacgtttccagacatcatccactgtcacgtcaggaaagca
cacattcctatggatgcttggcacgtgactttggaccacgtcagcaggcggttggaccgc
tcagctctgtacttctgtggcttccccactctgcagcacattaaacataagttttacaaa
aagaagagtggagtggttgtcttccagcagagcagcagaggagagaacatgatgctggat
attctgccaagagaagaagaagagctgacatgtgaagatgctgctgcgaaagtgctggga
aaatccttgtttgtcaactggccccatcttgaggaagctcgcatcattgcagtgtcagac
ggagacaccaagtttcgcctggatgaatcagcaggtgatcagagagtctacgaccgatcc
tcatctcctcctccgaccaaagtctgttatctttctgacaaggagcagaaagaatgggtg
aaagaagtccaaggaatcactgagcatttcatgaaaagaaaaggcatcatcgtgaacgaa
acagcagtggttttgtacggccagctgttgacaggaaggaagtacatccctaaagctaat
ggagcggtggaacttgagaagcagtggtccaaacaagtttttcctttcgcctaccagact
gtggtcaaggacatcgaggccttttactcctctctaacccatttcagcagcttagatgag
cttttccctccaacaaccactgtattcatggtgggaaacccttactacggtgccatgggt
gaggtgcaggattccagtgatgtcatcaaagatggccgagtgcgtgtagtcttcggtgtg
cctcctgagccacagcttgagtctttaatccagaatcagcacaaatactgtgtcaaatac
agtccagggtatgtgctggcgtctcatcttggcatcagtagctacctggtgtctcgcttc
tctgggagcatcttcattggcagaggctctaagaggaatccgtgtggggagcaaagggcc
aacattggcctgaacctgaagttcaacaagaaaaatgaggaggttcctggatacaccaag
agaactgagagggagtggctctactcctctgctgtggaggatctgctggctgaatacgtg
gaaaggtttgctgaggttttcaacacagtatccaggaacagtcacgatgatgttttctat
gaagatgacatctggcctggagaagaacagaatggggcagaaaaagtttctgaaatcacc
tcgtggctgaaaagtcaccccgtcagctccatcagcagatcanntcaggttcttgacgct
gccattgtggaaaagattgaagaggcgacggacaaaaccaaggtgaagaagaacatcaag
aaggtccgtgtgactgttaagcctcatctgctcttcaggccgctggagcagcaacagggc
gtggttccagacccggacgcagaataccggctctttgaccgagtcatcaacatcagagag
agtttcaccgtcccacttggactcagagggacgatcattggcatcaaaggagctgaccgt
gatgctgaggtactgtttgaagtgttgtttgatgaagaatttgccggtggtctgataatc
agatctacgtcacaccgtggttaccgcctgcctccctgtgctcttatcaatctctcccat
ggagccagaatggaccacacctcccacaaactcactgctatcgtcaaaccacagcctgtc
actggagctaactttcactcaaaccgccagctggccggactcaaccattctccacagtca
cctttcatacccacacagcaccaaaacaaacataacagcacggcgaaagcagcatcgtac
agcaacaggaacgctccatttaagggtctaccttccaaacctcaaaccaagaataaagaa
gaatgcagtaatgtgtggcagtcaccacagaacgtggctcctcccaacaaacctccagct
cactggcacaaccatgaaggtcactcacagccaggaaggcaccaaaacccaacccctaac
aaagctgcaccgactggtggcatcaggctgttgaggaaaaatgaaaaccctgacgctctg
tttcctgcacagaacaacagtgagaaggcgtcagctgagtttgcagacctccttgctagt
ctcaagatctctaagggaaacacgcagagtccgcctccatcagctgctgcagcagaaccc
accagccatcctgaaggaccactgtccccacagtccttcgccatgaagggaactatggtg
ctaaaagaaatgctaaagatcgacagctccagcacagagactcctccagtgcaggacgac
accagcacgcccacgcccgggagtcggcagcagaacaggagccgctcgtccaagaaactg
gccgcaaagatgaactccccacatggtgacatgccgttagctccccctccctcagccaac
cccaacgccatgctgggcagtaaggtgtcagagctgacatgtgtctgcgtgggtttaggg
atggccccgcctgagttcagctttatatgcaacagacagggtttagtcgtgtgtcaggtg
aaactgtccaacggtttgatggttcacggtccgcagtcgcagtctgaaaatgagtccaag
gaaaaagctgccttctttgccctgcagagactgaactccatgggatcagggttcccactc
acctacccaggtgtgggtcagatacgacctccacctttgggccccatgactcgtatgctc
aaccaacaagtgttgcctcacccaggttatgttcctccccctctgtggggaatgaccgct
cccccacaccaccacaacaaacccttctacggcgcagcagggaccttccctcatggtgtc
cgcccaccacctgcaacaacgttgcccattggttcccataaccagttcatacctctacag
gtaaccaagaagcgtgtttcagtaaacaaaaagaaccaggaaagcagagagttttacagt
gctgcccacaccgtggccaggaaccaatcacagagagcccagaaccagcccgacgtccag
tcacagagtcggagtgagcctcagagcagacagatgggccggccacacgcagatgctgcg
aacagcaacgcctcgttatcctcagtgaatcaagccgacggtgtttccacgacagcagca
gccgcacagacaccaccacgacagaacaacccagcagcacaaggtcacacaccggggtcc
gcctccaaaaggaggtataggaagctggccgtcaactttgaagctgccaaagtctcagag
ggttga
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