Cynoglossus semilaevis (tongue sole): 103398197
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Entry
103398197 CDS
T04866
Symbol
thoc5
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103398197 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csem03019
]
103398197 (thoc5)
03041 Spliceosome [BR:
csem03041
]
103398197 (thoc5)
Messenger RNA biogenesis [BR:
csem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
103398197 (thoc5)
Spliceosome [BR:
csem03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103398197 (thoc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
DUF2542
Motif
Other DBs
NCBI-GeneID:
103398197
NCBI-ProteinID:
XP_016898455
LinkDB
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Position
Z:complement(17720407..17728616)
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AA seq
704 aa
AA seq
DB search
MLKSIWLHFSYGIYKFGSSAMSSDALKKRKSKVLRSEGGTPEVKKGRTEGEQQEARVYNE
EVELDISDPQQDYIQYKESCESLATLMNEIQELKANGAKEGCAEVEEKRMQSCIHFMNLK
KLNRLAHMRLKKGRDQTHEAKQKVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIEL
VSEDEFYREAPEEISRPHITESDPHQLTMARLDWELEQRKRLAVEYKESLARKEKTQKSI
EEKKAHLMSLQPGLNAIMQASLPVQRCLSMPFEQTQKQNEIARHLPPPLYVLFVQANAYG
QACDKNLTVSISGDVDEAKALSKPPEDSQDDESDSDAEEEQEKTKRRRPTAGGQLDDKRR
EMLKRHPLSLCLELKCKDCSILHLVFYHLMNLNIMTVKTKVSAFAELNTILSAEELLKSD
TLLNCLYTGDHGKETPNPANRYQFDKVGILSFGDYXXXXXXXYTWVQYLGGLNFRIDASE
TVPVGNSLSASHMESTIKLLRKRVHSRMDLHKQFVFLEHSIIPITSECQHLFPAKIISRL
ACWTTITHQDYMVLPYTGHVTEAGLAKETDMYFMAVVERGTARLQAAVVLSPCYPKVSPL
FSLSLSWKGERSGRTDDNLRAMESEVNVFKSELQGPHPGHQLLTNQMARLCVCLDVYLET
EEHDDGVEGPREFPREKMCLRTVRGPNRLKPFKYNHPQGFFSHR
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaaagcatttggttacattttagttacggcatctacaaatttggttcttcggca
atgtcatcggacgccctaaagaagcgaaaatcgaaggttcttcgcagtgaaggaggaacc
ccggaggtgaaaaaaggtcgcactgaaggagaacagcaggaagcccgtgtgtataatgag
gaggtggagctggacatcagtgacccacagcaggactacatacaatataaggagtcatgt
gagagtttggccactctcatgaatgagatccaggagctcaaggctaatggggccaaggaa
gggtgtgctgaggttgaggaaaaacgtatgcaaagctgcattcatttcatgaatctgaaa
aagctcaatcgtctggctcatatgcgtctgaagaaaggaagagaccaaacacacgaggca
aaacagaaggtggatgtgttacacctccagctgcagaacttgctttatgaagttatgcat
cttcagaaggagattagcaagtgtctcgagtttaagtctaaacatgaggagattgagttg
gtttctgaggatgagttttaccgggaggctcctgaggaaatttccagacctcacattaca
gaaagtgatccccaccagctcacaatggctcgactggactgggagcttgaacaaagaaaa
aggttggcagtggaatataaagagtctctggccagaaaggaaaagacccagaaaagcatc
gaggaaaagaaagcgcatcttatgagtttgcagccaggattaaatgccattatgcaggcc
tctctcccagtgcagcggtgcttgtccatgccttttgaacagacacagaaacagaatgag
attgctcgccatctacctccacctctctatgttctgtttgttcaagccaatgcctatgga
caggcctgtgataaaaatctcactgtgtcaatcagtggtgatgtggatgaagccaaggcc
ttgtccaaacctccagaagattcccaagatgatgagagtgattcagatgcagaggaagaa
caagagaaaacgaagaggaggagaccgacggcaggaggccagttggatgacaaaagacga
gagatgctgaaaaggcatccactgtcactgtgcttagaacttaagtgcaaagattgcagt
attctccaccttgttttctaccatctgatgaatctgaatatcatgactgtgaagaccaag
gtctctgccttcgctgaactgaacactatcctcagtgcagaggaactgctgaaatcagac
actctactcaattgtctctacaccggcgaccatggaaaggaaacaccaaatccagctaat
cgctaccagtttgacaaagttgggattctttcctttggggattatngnnnnnnnnnnnnn
nnnncctacacgtgggttcagtatctcggggggcttaatttccgtatcgatgcttcagag
accgttcccgttggcaattccttgagtgccagccacatggagagcaccataaagcttctg
cgaaaacgagtccactcccgtatggatttgcacaaacaatttgtctttttagagcacagc
atcatccccatcaccagtgagtgccagcatctctttcctgccaagataatttcacgttta
gcttgctggaccaccattacacaccaggactacatggttctaccatatacaggtcatgtg
actgaggctggcctggcaaaggagactgatatgtacttcatggcagtggttgaaagaggc
acagctcgtctccaggcagcagtggtgctgagtccttgttacccaaaggtctctcctctg
ttctccctttctctgagctggaagggcgaacgcagtggacgtaccgatgacaacctcaga
gccatggagagtgaggtgaacgtgtttaaaagtgagcttcaaggccctcatcctggacac
cagctcctcaccaatcagatggcacgtctgtgtgtctgcctggatgtttatttagagacc
gaagaacacgatgatggagtggaaggtccacgggagtttcccagagaaaaaatgtgtcta
cgaactgtcagaggtccaaatcgtctgaagccattcaagtacaaccatccccagggattc
ttcagtcatcgctaa
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