KEGG   Cynoglossus semilaevis (tongue sole): 103398523
Entry
103398523         CDS       T04866                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
csem  Cynoglossus semilaevis (tongue sole)
Pathway
csem03030  DNA replication
csem03410  Base excision repair
csem03420  Nucleotide excision repair
csem03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103398523 (rfc4)
   03410 Base excision repair
    103398523 (rfc4)
   03420 Nucleotide excision repair
    103398523 (rfc4)
   03430 Mismatch repair
    103398523 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csem03032]
    103398523 (rfc4)
   03036 Chromosome and associated proteins [BR:csem03036]
    103398523 (rfc4)
   03400 DNA repair and recombination proteins [BR:csem03400]
    103398523 (rfc4)
DNA replication proteins [BR:csem03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    103398523 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    103398523 (rfc4)
Chromosome and associated proteins [BR:csem03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    103398523 (rfc4)
DNA repair and recombination proteins [BR:csem03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     103398523 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    103398523 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA AAA_lid_RFC1 RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA_assoc_2 AAA_16 AAA_22 AAA_11 AAA_30 DUF815 Mg_chelatase Cdc6_lid AAA_14 AAA_19 Gp44_lid RuvB_N SLFN-g3_helicase AAA_24 Kinesin DNAX_ATPase_lid AAA_5 ResIII AAA_7 AAA_28
Other DBs
NCBI-GeneID: 103398523
NCBI-ProteinID: XP_008335395
UniProt: A0A3P8UE23
LinkDB
Position
2:10595443..10599251
AA seq 358 aa
MQAFLKGSAVQSVRAQKDKTSSSSSAGAERKTRAVPWVEKYRPKCVDEVAFQEEVVAVLK
KSLDGADLPNLLFYGPPGTGKTSTILAAARELYGPQLFRQRVLELNASDERGIQVVREKV
KNFAQLTVAGSRPDGKPCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYI
SRIIEPLTSRCSKFRFKPLANQIQEERLLSICEKEELKYSRESISALVQVSEGDLRKAIT
LLQSAARLSMDREITETSVIEIAGVVPPKTIDKLLQVCFRGTFEKLEVVIRELVDDGYAA
TQILTQLHDAIVEGHLSDKQKSAITEKMAVVGKCLLDGADEYLQLLSLCSLIMHQSNN
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgcaggcgtttttgaaaggatctgcggttcagtctgtcagagctcagaaagataaaacc
tcgtcgtcttcatcagcaggagctgagaggaaaaccagagctgtgccctgggtagagaag
tacagaccaaagtgtgtggatgaagtggcctttcaggaggaggtggtggcagttctgaag
aagtctctggatggagcagatctccctaacctcctgttctatggacctcctgggacagga
aagacctccaccattctggcagctgccagagaactttatggtcctcagctcttcagacag
agggtgctggaactcaacgcttcggatgaacgaggtatccaagtggtcagagagaaggtg
aagaactttgctcagctgacagtggcaggaagtcgaccagatgggaagccctgtcctccg
ttcaagatcatcatcctggatgaagcagactccatgacagctccagctcaggctgctctc
aggagaaccatggagaaggagtctcgcaccacacgcttctgcctcatctgtaactacatc
agcaggatcatcgaaccactgacatccagatgttctaaatttcgcttcaagcctttggcc
aatcagattcaagaggagaggctgctgtcaatctgtgagaaggaggagctaaagtacagc
agagagagtatctcagctttggtgcaggtgtcggagggcgacctgcggaaggccattacc
ctgctccagagtgccgcccgcctcagtatggacagagagatcacagagactagtgtcatt
gaaatcgctggggtggttcctccaaaaaccatcgacaagttgctgcaggtctgcttcaga
ggaacatttgagaaactggaggtggtgatcagagagctagtggatgacggctacgctgca
actcagatcctgactcagctccacgatgccattgttgaaggccatctgagtgacaagcag
aagtcggccatcactgagaagatggcggtggtggggaagtgtctgttggatggagcggac
gaatacctccagttgttaagtttgtgttcgctcatcatgcaccagtccaacaactga

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