Cynoglossus semilaevis (tongue sole): 103398864
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Entry
103398864 CDS
T04866
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03013
Nucleocytoplasmic transport
csem03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103398864
03015 mRNA surveillance pathway
103398864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csem03019
]
103398864
Enzymes [BR:
csem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103398864
5.6.2.5 RNA 5'-3' helicase
103398864
Messenger RNA biogenesis [BR:
csem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103398864
mRNA cycle factors
Common to processing body (P body) and stress granule
103398864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
103398864
NCBI-ProteinID:
XP_008335834
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTHSQLDSQING
PVLQNGDDPVLKASQLLAELNFEEDEEDAYYTKDLPIHACSYCGIHDPACVVYCNTSKKW
FCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETLLECYNCGCRNVFLLGFIPAKADS
VVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQIN
KLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKES
QTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVIKV
PDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYH
KLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA
TIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHN
QTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAGDP
RLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQS
LFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRMKKGFDFQWPQPD
KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGVITPYEGQRSYL
VQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL
TRARYGVIIVGNPKALSKQPLWNYLLNYYKEQKVLVEGPLNNLRECLMQFSKPRKLVNTI
NPGGRFMSTTMYDAREALIPGSVYDRSSNGRISNIYFQTHDQIAMINSGPNSMNMNIPIP
FNLVMPPMPPSGYMSHMNGSSGGRGGGMKGKLGSTGGGGGGGIGGGGTRGNRQRNRGHLG
NHDGGNGGVDRRHGGHTTSSQASQDLGSQSFSQGPLTQGYINMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcacagactctgacgttcctggacacggaggaa
gcggagctgctgggagcggacacccagggttccgagtacgacttcaccgacttcaccctg
ccaagccagacacagacccaaggccagacccacagccaactcgacagccagattaatgga
ccggtgctgcagaatggagatgaccctgtgttaaaggccagtcagctgctggcggagctg
aactttgaggaggatgaggaggatgcctactacaccaaggaccttcctatacacgcctgc
agttactgtgggattcatgatccagcctgtgtggtctactgcaataccagcaagaagtgg
ttttgtaatggccgaggaaacacatccggcagccacattgtaaaccacctggtgagggca
aagtccaaggaggtaacccttcacaaagatggtcccttgggggaaacactgctggagtgc
tacaactgcggctgtcgcaatgtcttcctgctgggttttatccccgccaaggctgattct
gtggtggtgttactgtgcagacagccttgtgccagccagagcagcctgaaagacatcaac
tgggacagttcacagtggcagccgctcattcaagatcgctgcttcctgtcctggttggtt
aaaattccgtcagagcaggagcagctcagggcccgacagatcactgctcagcagatcaac
aagctggaggaactgtggaaggaaaaccccacagccaccttggaggacctagaaaaacct
ggtgtggatgaagaacctcagcacgtcctgctccgatatgaagatgcgtatcagtaccag
aacatctttggtcctctggtgaagctggaagcggactatgacaagaaactcaaagagtcc
cagactcaggacaacatcaccgtccgatgggatttgggactgaacaaaaagaggattgct
tatttcacccttcccaaaacagactcagatatgcgacttatgcagggagatgaaatttgc
ctgaggtacaaaggagacctggctccgccatggaaaggcatcggacacgtcatcaaagtt
ccagacaactatggtgatgagattgccatagagttgaggagcagtgccggtgcaccagtg
gagatccctcacaactttcaggtagactttgtctggaagtccacctcgtttgacaggatg
cagagtgccctgaagacctttgcagtggatgagacttcagtgtcaggttacatctaccac
aaactgttaggacacgaggtggaagacgtggtcatcaaatgtcagctgcccaaacgcttc
acagctcagggactgcctgatctgaaccactcacaggtgtatgctgtgaagacggtgctg
cagcgccccctgagtctgatccaaggaccacctggcacagggaagacggtaacatctgcc
accatcgtctaccacttggccagacagggtaatgggccagtgctggtttgtgctcccagt
aacatagctgtagaccagctgactgagaagatccatcagacaggactgaaggtggtgaga
ctttgtgctaaaagcagagaagccattgactcacctgtgtcttttctggccttgcacaac
cagacacgaaacatggacagtatgcctgagcttcagaagctccagcagctgaaggatgag
actggagagttatcttcatctgatgagaaaagatacagagctctaaggcgcaccgccgag
agggagcttcttatgaatgctgatgtgatctgttgcacctgtgtcggagctggtgatcca
cgtttggccaagatgcagttccgttcaattcttattgatgaaagcacacaggccacagaa
ccagagtgcatggttcctgtggttttgggggccaagcaattgattttggtgggtgatcac
tgccagttgggtcctgtggtgatgtgtaagaaagcagctaaagcaggtctgtcgcagtct
ctctttgagcggctggtggtcctcgggatacggcccattcgtctgcaggtgcagtaccgc
atgcatccagcgctcagcgcttttccctccaacatcttctatgaaggctcactgcagaat
ggtgtcactgctgctgaccgtatgaagaaaggctttgactttcagtggccgcagccggac
aaaccaatgttcttctatgttacacaaggccaagaggaaattgccagctctggaacatcg
tatctgaacaggacagaggcagcaaatgtggagaaaataaccacaaggctgttaaaggct
ggagctaaacctgatcagattggtgtcattaccccatatgagggtcagaggtcatacctg
gtccagtacatgcagtttagtggctctctccataccaagctctatcaggaggtggagata
gccagtgtggacgcctttcaaggcagagagaaagacttcatcatcctctcctgtgtaaga
gccaatgagcatcagggcatcggcttcttgaacgatccccgacgtctaaatgtggcactc
accagggccaggtatggtgtgattattgtggggaacccaaaggctctttctaaacaaccc
ttgtggaactacctcctcaactactacaaggagcagaaggtcctggtcgaaggccccctc
aacaacctgagggagtgcctaatgcagttcagcaaacctcgcaaattggtcaacaccatc
aatcctggaggccggttcatgagcaccaccatgtatgatgccagggaggcccttattcca
ggatctgtttatgatcgcagcagcaatgggcgaatctccaacatatattttcaaacccat
gaccagattgccatgattaattcaggccctaattccatgaacatgaacatacccattccc
ttcaaccttgtgatgcctcccatgccaccatctggttacatgagccatatgaacggttct
tcaggaggtcgtggtggaggtatgaagggcaagttgggtagcacaggaggaggaggaggt
ggaggtataggtggaggtggaactagaggtaaccgacaaaggaaccgcggccacctaggt
aaccatgatgggggaaatggaggtgtggaccgcaggcatggaggacatacgaccagcagc
caggccagccaagacctgggctcccagtccttctcccagggccctcttacacaaggctac
atcaacatgagccaaccatcacagatgagtcagcctggactctcccagcctgaactctcc
caggacagttacctgggagatgagttcaaatcccagattgatgtggctttgtcccaggac
tccacctaccagggggagcgggcgtaccagcacggtggtgtgactggactctcccagtac
taa
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