Comamonas sediminis: ACQYWY_00945
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Entry
ACQYWY_00945 CDS
T11250
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
csen Comamonas sediminis
Brite
KEGG Orthology (KO) [BR:
csen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csen03032
]
ACQYWY_00945
03400 DNA repair and recombination proteins [BR:
csen03400
]
ACQYWY_00945
Enzymes [BR:
csen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ACQYWY_00945
DNA replication proteins [BR:
csen03032
]
Prokaryotic type
DNA Topoisomerases
ACQYWY_00945
DNA repair and recombination proteins [BR:
csen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ACQYWY_00945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
XTV01063
LinkDB
All DBs
Position
complement(209109..210146)
Genome browser
AA seq
345 aa
AA seq
DB search
MVKLPRPLAYVTDATPGWQRIPHGDGFVYKNQRGQVIRNAGHLDRIRKLVIPPAYTDVWI
CPDPQGHLQATGRDARGRKQYRYHPLWQEQRKQTKFDRMAAFAAKLGLIRRRIQRDLKAG
DTTQTSVSAAVVRLLDTTALRIGNDSYARENGSFGLTTLRNRHVKMRSSRIQLAFKGKSG
VEQRVELEDPRVARIVRRCQDLPGQRLFQYLDDDGQRKQLRSEHVNAYLHEIAGEDFSAK
DFRTWHASVLALSLALQSRSSDTPLTAPDIVKQVAQHLGNTVSVCRKFYIHPLVMEVCEG
PEAGARCDAYASKLRGSSGLHAAERALMAFLAGSKGSKRGAKQRQ
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaactccccaggccgctggcctatgtgacggacgcaactccggggtggcagcgc
atcccgcatggggatggctttgtctacaagaaccagcgtggtcaggtgattcgcaacgcc
ggtcacctcgatcgcatccgcaagctggtgataccgcccgcctacaccgatgtctggatc
tgtccggatccgcaaggccatctgcaggccaccggccgcgatgcacgggggcgcaagcag
taccgctaccacccgctgtggcaagagcagcgcaagcagaccaagttcgaccgcatggcg
gcctttgcggccaagctggggctgatccgccggcgcattcagcgcgacctgaaagccgga
gataccacgcagacctcggtgtcggccgccgtggtccggctgctggacaccaccgcactg
cgtattggcaacgacagctatgcgcgcgagaacggatcgtttgggctgacgaccctgcgc
aaccgccatgtgaagatgcggtcatcgcgcatacagctggccttcaaaggcaagagcggc
gtggagcagcgcgtggagctcgaagacccccgcgtggcccgcatcgtgcggcgctgccag
gacttgccgggccagcgcctgttccagtacctcgatgacgacgggcagcgcaagcagctg
cgctccgagcatgtcaacgcctacctgcacgagattgcaggggaagatttcagcgccaag
gactttcgcacctggcatgccagcgtgctggcactgtcgctggccttgcagtcgcgcagc
agcgatacgccgctgaccgcgcccgacatcgtcaagcaggtggcccagcacctgggcaac
acggtttccgtctgccgcaagttctacatccacccgctggtgatggaggtgtgcgaaggc
cccgaagcgggggcccgttgcgacgcgtacgccagcaagctgcggggcagctcgggattg
catgcggccgaacgtgcgctgatggcttttttggccggtagtaagggtagtaaaagaggc
gccaagcaacgccagtga
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