KEGG   Comamonas sediminis: ACQYWY_01235
Entry
ACQYWY_01235      CDS       T11250                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
csen  Comamonas sediminis
Pathway
csen03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:csen00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ACQYWY_01235 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csen03400]
    ACQYWY_01235 (ligD)
Enzymes [BR:csen01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ACQYWY_01235 (ligD)
DNA repair and recombination proteins [BR:csen03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ACQYWY_01235 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: XTV01119
LinkDB
Position
272240..274777
AA seq 845 aa
MPSSLSKYQSKRNFAVTPEPAEGGEPVAGQLQFVIQKHWASHLHYDLRLELDGVMKSWAV
PKGPSLDPSHKRMAVQVEDHPISYNRFEGQIPAGNYGAGKVIVWDKGLWTPLADPLEGYR
KGKLHFELHGHKLQGRWTLVRMKGKESDRQPPWLLIKEADDFARSAEEFEVVESQPDSVA
GLAPPLPSAQAPARAAPAAPAKPRAKVKAKASTRTKTSPLPKTLEPQLAVLVDAPPIDAE
DWAWELKFDGYRMVARKKGAQVQLWTRNGKDWTAKMPGLAQALDRLPLADAWLDGEVVAL
NAQGLPDFQLLQNAFDGSAQTPLVYYLFDLAFADGQDLRGQPWQARRETLQAALQSSEGL
GDAIRLSEAFAGDAAQLLASSCALGMEGIIGKRKDAAYHAGRTADWIKLKCQKRQEFVIG
GYTSPKGSRTGLGSLLLGVHDGQGRLVYAGNVGTGFNEASLRELTRQLERIQVRVCPFAD
PERIDYQAQWVKPMLVAEVAFAGWTAQGRVRQAVFHGLRQDKPARQITREESATMPPTQK
AKPAPAAAIEVSHPERVMDASTGVTKLDLVRYYERVGPLMMPHLKARPTSLMRTPDGVAG
EHFFQKHLQTREMAGIVQLPQSLDPEHPPLLSIASIQGLLQAAQFNVVEFHTWNAQRDKI
LRPDRMTFDLDPGEGVPWSAVQEGAELVRVLLQELGLPAFLKTSGGKGLHVVVPIQRRHD
WDTVKGFSKAIVQHLAETIAQRFVAKSGPSNRKGKIFVDYLRNGWGATTVSAWSARARPG
MGVSVPIEWAELDRVSSGAHWSITSVEERFRKGNAPWDGYSAAAVSITAAMKQLGYSAEQ
SAAQR
NT seq 2538 nt   +upstreamnt  +downstreamnt
atgcccagttccttgtccaaataccagagcaagcgcaatttcgcggtcacgcccgagccg
gccgagggcggtgaaccggtcgccggccagctgcagttcgtcatccagaaacactgggcc
agccatttgcactatgacctacggctggagctcgacggcgtgatgaaaagctgggcggtg
cccaaggggccaagcctcgaccccagccacaaacgcatggctgtacaggtggaagaccac
ccaatctcctacaaccgttttgaaggccagattcccgcaggcaactatggcgcaggcaag
gtcatcgtctgggacaagggcctgtggacgccgctggccgacccgctggagggctaccgc
aaaggcaagctgcactttgagttgcacggccacaagctgcaaggccgctggaccctcgtg
cgcatgaagggcaaggagagcgaccggcagccgccctggctgttgatcaaggaggcggac
gactttgcccgcagtgccgaggagttcgaggtggtcgagtcccagcccgacagcgtggca
ggcctggcgccgccgctgccgtctgcccaggccccagcgcgtgcagcgcccgccgctccg
gcaaagcccagggccaaggtgaaggcgaaggcgagtaccaggaccaagacatcgccgctg
cccaagaccttggaaccccaactggccgtgctggttgatgccccgcctatcgacgccgaa
gattgggcctgggagctcaagtttgacggctaccgcatggtggcgcggaaaaagggtgcg
caggttcagctgtggacccgcaatggcaaggactggacggcgaagatgcccggcctggcg
caagcgctggaccggctgccgctcgccgatgcctggctggatggggaagtggtggcactc
aatgcccagggactgcccgattttcagctgctgcaaaatgcgttcgatggcagcgcccag
accccgctggtctactacctgtttgacctggcctttgccgatggccaggatctgcgcggc
cagccctggcaggcgcggcgcgagaccttgcaggcggcgctgcagtccagcgaggggctg
ggcgacgcgattcgcctcagtgaggctttcgcaggggatgcggcgcagctgctggcctcg
tcctgcgcgttgggcatggagggcatcatcggcaaacgcaaggatgccgcctaccacgcg
ggacgcacggccgactggatcaagctcaaatgccagaagcggcaggagttcgtcattggc
ggctacaccagtcccaagggatcgcgcaccgggctgggctcgctgttgctgggtgtgcat
gatggccaagggcggctggtctatgcgggcaacgtcggcaccggcttcaatgaggccagc
ctgcgcgagctgacccggcagctcgagcgcatccaggtgcgcgtctgcccctttgcagat
cctgagcgcattgactaccaggcgcagtgggtcaagcctatgctggtcgccgaagtcgcg
tttgccgggtggacggcacaaggccgggtgcgccaggcagttttccatggcttgcggcag
gacaagcctgcgcgccagatcaccagggaggagagtgcgacgatgcccccaacgcaaaaa
gcaaagcctgcgcccgctgcagcgatcgaggtcagccacccggagcgcgtgatggacgcc
tccaccggcgtgaccaagctggacctggtgcgctattacgagcgggtcggcccgctgatg
atgccgcacctcaaagcccggcccacgtcgctgatgcgcacgcccgacggcgtggcgggc
gagcatttcttccaaaagcatctgcagacgcgcgagatggcgggaatcgttcagctgccc
cagtcgctggatccggagcatccgccgctgctgagcattgccagcatccagggcctgctg
caggcggcacagttcaatgtggtcgagtttcacacctggaatgcccagcgcgacaaaatc
ttgcggccagaccgcatgacctttgatctggaccccggcgagggcgtgccctggtctgcg
gtgcaggagggcgccgaactggtgcgggtgctgctgcaggagctggggctgcctgctttc
ttgaagaccagcggcggcaagggcctgcatgtggtggttccgatccagcggcgccatgac
tgggacaccgtcaagggtttctccaaggcgatcgtgcagcatctggccgagaccatcgcg
cagcgctttgtcgcgaaaagcgggcccagcaaccgcaaaggcaagatctttgttgactac
ctgcgcaatggctggggcgcgaccacggtcagtgcctggtcggcacgggcccggccaggg
atgggggtgtcggtacctatcgaatgggccgagctggatcgggtctcgagcggtgcgcac
tggtccatcacctcggtggaagagcgttttcgcaagggcaacgcgccctgggatggctac
agcgccgcagccgtgtcgatcaccgcagcgatgaagcagctcggctattcggccgagcag
tccgcagcccagcgctaa

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